BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484274
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03640.3 | Symbols: | Nuclear transport factor 2 (NTF2) fam... 1583 0.0
> AT2G03640.3 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr2:1104314-1106867 REVERSE LENGTH=1727
Length=1727
Score = 1583 bits (857), Expect = 0.0
Identities = 1044/1136 (92%), Gaps = 6/1136 (1%)
Strand=Plus/Plus
Query 1 TCTCTTCTTCACTCTAATTGCGATTGATTCTCTTGTCTTGTCCAATTTATCAGAGAAATT 60
||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 86 TCTCTCCTTCACTCTAATTGCGATTGATTCTCCTGTCTTCTCCAATTTATCAGAGAAATT 145
Query 61 GCAGAGATGACACCTGAATCAAATGCTCCATCAGTGGATCCACAATTTGTAGGCAATGGG 120
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 146 GCAGAGATGACACCTGAATCAAACGCTCCCTCAGTAGATCCACAATTTGTAGGCAATGGG 205
Query 121 TTTGTCCAGGAATACTATAACCACCTTTATGAATCATCCTCTGAAGTACACAAATTCTAT 180
||||| || ||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct 206 TTTGTTCAAGAATACTATAACCACCTTTATGATTCAACCTCGGAAGTACACAAATTCTAT 265
Query 181 CTCGAGGACAGTTTGATTTCACGGCCGGGTCTCGATGGTGAGATGGTTACTATCAAATCC 240
|||||||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 266 CTCGAGGATAGTATGATTTCACGGCCTGGTCTCGATGGTGAGATAGTTACTATCAAATCC 325
Query 241 TTGAAAGCGATTAATGATCAGATAATGTCCGTTGACTACAAAAGCTCGAA-GATAC-AGA 298
||||||| |||||||||||||||||||||| |||||||||||||||| || ||| | |||
Sbjct 326 TTGAAAGGGATTAATGATCAGATAATGTCCATTGACTACAAAAGCTC-AAGGAT-CGAGA 383
Query 299 TTTTGACTGCTGATTCTCAACCAACTTTAAAGAATGGTGTTGTAACTCTAGTCACGGGTT 358
|| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 384 TTCTAACTGCTGATTCTCAATCAACTTTAAAGAATGGTGTTGTAACTCTAGTCACGGGTT 443
Query 359 TAGTGATCGGGAAAGATGGAGGAAGAAGGAAATTTTCTCAAAGTTTCTTCCTTGTGCCGC 418
||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||| |||
Sbjct 444 TAGTGATCGGGAACGATGGAGGAAGGAGGAAATTTTCTCAGAGTTTCTTTCTTGTGTCGC 503
Query 419 GGAATGGAAGCTACTTTGTACTGAACGATACCTTTAGGTACGTGTCTGATGAGTTTTTTG 478
||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |||
Sbjct 504 GGAATGGAAGCTACTTTGTGCTGAATGATACCTTTAGGTATGTGTCTGATGAGTTTGTTG 563
Query 479 AACCAGAAGCTACCAAGGAGGTCGAGGAGAGTCAGTCAACAAAAGCTATCACCGTAGAGC 538
|||||||||||||||||||||| |||||||||||||||||||| |||||||| | |||||
Sbjct 564 AACCAGAAGCTACCAAGGAGGTTGAGGAGAGTCAGTCAACAAATGCTATCACTGCAGAGC 623
Query 539 CTGCAAATGAAATTGTAGAGGCAGTTATTGTCCCTACTCAAGCTAAAACTACAGTGACAA 598
|||||||||||| ||||||||| ||||||||||||||| ||||||||||||| ||||| |
Sbjct 624 CTGCAAATGAAAGTGTAGAGGCGGTTATTGTCCCTACTGAAGCTAAAACTACGGTGACGA 683
Query 599 AGCCCGCAAGTGTCATAGCAAACGGACATGCGAAAGTCCCTGAGGAGAAAGTTGTGAATG 658
|||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 AGCCAGCAAGTGCCATACCAAACGGACATGCGAAAGTCCCTGAGGAGAAAGTTGTGAATG 743
Query 659 GAAACAGCAACATGCCTAAAGCTGCTGAAGCAAAACTTCAAGAGGAGGCTCCCAAGAAAT 718
|||||| | | | |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 744 AAAACAGTAGCTTACCTAAAGCTGCTGAAGCAAAACTTCAAGAGGAGGTTCCCAAGAAAT 803
Query 719 CCTTTGCATTAATTGTCCAATCTCTGGCTGAAAACGCTGGTACTTTCCAGGATAAAGCTT 778
| |||||||||||||| |||||||||||| ||| |||||||||||| |||| |||||| |
Sbjct 804 CGTTTGCATTAATTGTTCAATCTCTGGCTCAAAGCGCTGGTACTTTACAGGTTAAAGCCT 863
Query 779 CACCAGCCAAGCCTAAACGTGTAGAAAGATCGATTGTTGCTCCTAAGCCCAAAGCTCCTG 838
| || | ||||| ||||| ||| |||| | || ||| |||||| ||| ||||||||||
Sbjct 864 CGCCGGTCAAGCGTAAACCTGTCGAAAAACCGGTTGCTGCTCCGGAGCGCAAAGCTCCTT 923
Query 839 CTTCAATTCCTAAACAAGCTTCTGGTGAAACCGTTAAACAACAAGCTCAAGGTAGTTCCA 898
| |||||| |||||| ||||||| ||||| | |||||| ||||||||| ||||||||||
Sbjct 924 CCCCAATTCGTAAACAGGCTTCTGCTGAAAGCATTAAACCACAAGCTCAGGGTAGTTCCA 983
Query 899 TATTTGTTGCAAACTTGCCTATGGATGCGACTATTGAACAACTCTATGAAACATTCAAAG 958
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 984 TATTTGTTGCAAACTTGCCTATGGATGCGACTATTGAGCAACTTTATGAAACATTTAAAA 1043
Query 959 GTTTTGGATCTATTAGGAAA-GATGGTATCCAAGTCAGAAGTTACCCGGaaaaaaaGAAC 1017
|||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1044 GTTTTGGAGCTATTA-GAAAGGATGGTATCCAAGTCAGAAGTTACCCGGAAAAAAAGAAC 1102
Query 1018 TGTATTGGGTTTGTGGCATTCGAAAATGGTGAATCAATAAAAAATGTCTTTCAGGCTCAC 1077
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1103 TGTATTGGGTTTGTGGCATTCGAAAATGGTGAAGCAGTAAAAAATGTCTTTCAGGCTCAC 1162
Query 1078 AAGGAAACACCAATCAGAATCGGAAACCGAAGAGCATCTATAGAAGAAAAGCGAGG 1133
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 AGGGAATCACCAATCAGAATCGGAAACCGAAGAGCATCTATAGAAGAAAAGCGAGG 1218
Score = 442 bits (239), Expect = 5e-123
Identities = 310/344 (90%), Gaps = 6/344 (2%)
Strand=Plus/Plus
Query 1192 GATGGATACAAACCTCGGGGAAGTGGTGTCAATGGAGGACGAGGCTATGGGAGACGGAAC 1251
||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1388 GATGGATACAAACCTAGGGGCAGTGGCGTCAATGGAGGACGAGGCTATGGGAGACGGAAC 1447
Query 1252 AATGAGTCTGATGGGGATGGTAAAGTATACCAGAACAATGGTCATGGCAATACTGAGGCC 1311
| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1448 AGTGAGTCTAATGGGGATGGTAAAGCATACCAGAACAATGGCCATGGCAATACTGAGGCC 1507
Query 1312 AAAAACTAGATTAGTTTTTGCTTCTTCCAAACTTTGTTTATTGGTTGAGAATCTGAGGTT 1371
||||||||||||||||||| ||||||| || ||||| | || ||||||||||||||||||
Sbjct 1508 AAAAACTAGATTAGTTTTTTCTTCTTCTAAGCTTTGCTCAT-GGTTGAGAATCTGAGGTT 1566
Query 1372 TTAGGCGATGTTAAAACAgattttagtttgcgaggatattttaggcgttgatctttttga 1431
||||||||||||||||| ||||| |||| || |||||| ||||| ||||||||||| ||
Sbjct 1567 GTAGGCGATGTTAAAACAAATTTTTGTTTCCGTGGATATCTTAGGTGTTGATCTTTTCGA 1626
Query 1432 tttttgatattgttttgGGATAAATCTAGAACATTTTTCTTCCCTCTTTGAT-T-TGTAT 1489
||| ||||||||||| |||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 1627 TTTGTGATATTGTTTGGGGATAAATCTAGAACATTTTTCTTCACTCTTTGATCTCTGTAT 1686
Query 1490 CTTCTCATGAGCAAAGGAGAAGAGAACAAAATTGAGTTGAATTA 1533
|||||||||| ||||| ||| || | |||||| || |||| |||
Sbjct 1687 CTTCTCATGAACAAAGCAGA-GA-A-CAAAATCGAATTGATTTA 1727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76003625130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5