BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484275
Length=2051
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03667.1 | Symbols: | Asparagine synthase family protein | ... 3127 0.0
> AT2G03667.1 | Symbols: | Asparagine synthase family protein
| chr2:1114127-1117439 FORWARD LENGTH=2043
Length=2043
Score = 3127 bits (1693), Expect = 0.0
Identities = 1939/2056 (94%), Gaps = 24/2056 (1%)
Strand=Plus/Plus
Query 1 ACAACTTTGACGGAACCGGAGACCAGAAGCAGACGCCGGCAGAGGGAGATATGTGTGGAA 60
||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 7 ACAACTTTGACGGAAACGGAGACCAGAAACAGACGCCGGC----GGAGATATGTGCGGAA 62
Query 61 TTGCGGTTGTTGTGTGCGGCGTTCGTATCGAACTCTCGACGCTTTCTTCGTTTCTCTCTG 120
|||| |||| ||||||||||||||||||||||||||||| ||||| |||| ||||||||
Sbjct 63 TTGCAATTGTAGTGTGCGGCGTTCGTATCGAACTCTCGACACTTTCGTCGTCTCTCTCTG 122
Query 121 AAACTGTGACTCCTTTCGAACGATTACAAGTCTCTGTTGAAGATGTTAAATCTGTCTTAG 180
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 123 AAACTGAGACTCCTTTCGAACGATTACAAGTCTCTGTTGAAGATGTTAAAGCTGTCTTAA 182
Query 181 GCCAAAGAGGTCCTGATAGTGTAGGAGAAAAGACTATTCATCTTCAACAAAATGTATCAA 240
|||||||||||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 183 GCCAAAGAGGTCCTGATAGTGTAGGAGAAAAGACTATTCATCTT---C-----G-ACCAA 233
Query 241 CTTGTGGTCAAGATTCTG-TGACTCTCTCTGTT-TCTGAGGCTAGTGAAGGAACTTATGA 298
|||||||||||| |||| | |||||||||||| | |||| ||||||||||||||||| |
Sbjct 234 ATTGTGGTCAAGAATCTGCT-ACTCTCTCTGTTGT-TGAGACTAGTGAAGGAACTTATAA 291
Query 299 GCTTGAGGAGACTACTTCTTTGGGTGAATTGCAtttttttGGTTCTACATTACAGCTTAG 358
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 292 GCTTGAGGAGACTACTTCTTTGGGTGAATTGCATTTTATTGGTTCTACATTACAGCTTAG 351
Query 359 AGGAACTAGTCCTATAAGGCAGCCATTGGTGGATTCTTCTGGGAACATTCTAGCTTACAA 418
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 352 AGGAACTAGTCCTATAAGGCAACCATTGGTGGATTCTTCTGGGAACATTCTAGCTTACAA 411
Query 419 TGGCGAAGTATTTGGTGGAATTGAACTCAACTGCTATGATAATGATACTGAAGTGCTTTT 478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 412 TGGCGAAGTATTTGGTGGAATTGAACTCAACAGCTATGATAATGATACTGAAGTGCTTTT 471
Query 479 GAAGTCTTTAGAGAAAGCAAAAGCTTTAGTTCCAGATGTTCTTTCGATGATTAAAGGCCC 538
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 472 GAAGTCTTTAGAGAAAGCAAAATCTTTAGTTCCAGATGTTCTTTCGATGATTAAAGGTCC 531
Query 539 CTGGGCCATTATATATTGGCAGGAAACCTCAAGAACGCTATGGTTTGGTAAAGATGCTTT 598
|||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| | ||
Sbjct 532 CTGGGCCATTATATATTGGCAGGAAAGCTCGAGAACGTTATGGTTTGGTAAAGATCCGTT 591
Query 599 TGGTCGGAGGAGCCTCCTTGTTCACTGGCCAACTGTGGAAGACCCTCGTTTTCTTCTATC 658
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 592 TGGTCGGAGGAGCCTTCTTGTTCACTCGCCAACTGTGGAAGACCCTCGTTTTCTTCTATC 651
Query 659 GTCTGTTTCACCAGCTTCTTCAGTTGCTCAAGGATTGGATGCTGAAAATGGTAATAGCAT 718
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 652 GTCTGTTTCACCAGCTTCTTCAGTTTCTCAAGGATTGGATACTGAAAATGGTAATAGCCT 711
Query 719 TCATAGATTTTGGGAAGAGCTTCCATGTGGCGTGTACAGCATTTCTTTTGGGGTTTCTGA 778
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 712 TCATAGATATTGGGAAGAGCTTCCATGTGGCGTGTACAGTATTTCTTTTGGGGTTTCAGA 771
Query 779 ATTATGTATTCGTGGTGAAGTCACAAAACACGAGTGGAGAAATACCATCTGGAAAGAATT 838
||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 772 ATTATGTATTCATGGTGAAGTTACAAAACACGAATGGAGAAATACCATCTGGAAAGAATT 831
Query 839 GATTGAATGGAAAAGGGAATTAGTTGTACCTAGACCTGAAGATCTATCAACGTCATCGCA 898
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GATTGAATGGGAAAGGAAATTAGTTGTACCTAGACCTGAAGATCTATCAACGTCATCGCT 891
Query 899 TAGTGGATTTCAGGAAGACAAATCTGTTTCGACTTCTTTAGGATTAGCGCAGACAGTTTT 958
||||||| ||||||||||||||||||| || |||||| ||||||| ||||||||||||||
Sbjct 892 TAGTGGAGTTCAGGAAGACAAATCTGTGTCAACTTCTCTAGGATTTGCGCAGACAGTTTT 951
Query 959 GGTCGTGTTAAAGGAATCAGTGAGGCGACGAACTTCACTTCATAGCATTTATCAGGGAGA 1018
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 952 GGTCGTGTTAAAGGAATCAGTGAGGCGGCGAACTTCACTTCATAGCATTTATCAGGGAGA 1011
Query 1019 AAAAGAAGCTGTCCCAGTAGCTGTTCTTTTCTCTGGTGGATTGGATTCGATGATTCTTGC 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TAAAGAAGCTGTCCCAGTAGCTGTTCTTTTCTCTGGTGGATTGGATTCGATGATTCTTGC 1071
Query 1079 TGCGCTGTTGGATCAGTGCCTGGATCCAAAATATGAGGTGGATCTCCTTAATGTCAGTTT 1138
|||||||||| |||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 1072 TGCGCTGTTGCATCAGTGCCTTGATCCAAAATATGAAGTTGATCTCCTTAATGTCAGTTT 1131
Query 1139 TGACGGTCCTAATGCTCCTGATAGGATCTCCGCCAAGGCTGGAATAAAGGAACTCAAAAA 1198
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TGATGGTCCTAATGCTCCTGATAGGATCTCCGCCAAGGCTGGAATAAAGGAACTCAAAAA 1191
Query 1199 GATTGCGCCTTTGAGAAGGTGGAAACTTGTTGAGATTGATGCTGATCTGTCAAAACTAAC 1258
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GATTGCACCTTTTAGAAGGTGGAAACTTGTTGAGATTGATGCTGATCTGTCAAAACTAGG 1251
Query 1259 CTTTGAGACAAAACGTGTTATGTCACTCATAAATCCTGCAGACACTTACATGGACCTAAA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1252 CTTTGAGACAAAACGTGTTATGTCACTCATAAATCCTGCAGACACTTACATGGACCTTAA 1311
Query 1319 CATAGGAACAGCACTATGGTTAGCTGCTCGCGGTGATGGTTGGATTCACGAAGATAATGA 1378
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1312 CATAGGAACAGCATTATGGTTAGCTGCTCGTGGTGATGGTTGGATTCACGAAGATAATGG 1371
Query 1379 AAATCCATGTGTAGAAGAAGATAAACAACGGGTCAAATATAAGTCTGATGCTAGAATCCT 1438
||||||| ||||||| ||| |||| || |||||||| |||||||| ||||||||||||||
Sbjct 1372 AAATCCAAGTGTAGAGGAAAATAACCAGCGGGTCAAGTATAAGTCCGATGCTAGAATCCT 1431
Query 1439 GCTTGTTGGCGCTGGTGCTGATGAGCAATGTGCTGGTTATGGTAGGCACAGAACAAAATA 1498
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1432 GCTTGTTGGCGCTGGTGCTGATGAGCAATGTGCCGGTTACGGTAGGCACAGAACTAAATA 1491
Query 1499 TCGAAACGGAAGTTGGGTTGCGTTAGATCAAGAAATGAAATTAGATATGCAGAGAATTTG 1558
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1492 TCGAAATGGAAGTTGGGTTGCGTTGGATCAAGAAATGAAATTAGATATGCAGAGAATTTG 1551
Query 1559 GAAAAGAAATTTGGGTCGAGATGATCGATGCATTGCAGATAACGGTAAAGAGGGGCGATT 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 GAAAAGAAATTTGGGTCGAGATGATCGATGCATTGCAGATAACGGTAAAGAGGGGCGATT 1611
Query 1619 CCCGTTCTTAGATGAAGATGTGATAAAGACTCTCCTTGACATTCCCTTGTGGGAAATTGC 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1612 CCCGTTCTTAGATGAAGATGTGATAAAGACTCTCCTTGACATTCCCTTGTGGGAAATCGC 1671
Query 1679 GGATCTTAAGCAACCAAGTGGAAAGGGAGACAAGAAGATTCTTAGACAGGTTGCAAAGT- 1737
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1672 TGATCTTGAGCAACCAAGTGGAACGGGAGACAAGAAGATTCTTAGACAGGTTGCAA-GCC 1730
Query 1738 TGCTTGGTTTACATGAAGTTGCAAAGATGCCTAAGAGAGCAATTCAGTTTGGATCGAGAA 1797
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1731 TGCTTGGTGTACATGAAGTTGCAAAGATGCCTAAGAGAGCAATTCAGTTTGGATCAAGAA 1790
Query 1798 TCGCTCGTGAATCGAACCGGAAGAATTTTGGAAGTAACCGTGCCGCAAACCAGGCTTCTG 1857
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 TCGCTCGTGAATCAAACCGGAAGAATTTTGGAAGTAACCGTGCCGCAAACCAGGCTTCTG 1850
Query 1858 CCGGGAGCGTGAGATTCCAAGCACCGTCACACTAATTCCCTCCT-ATTCATGTTAGATCA 1916
|||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 1851 CCGGGAGCGTGAGATTCCTAGCACCGTCACACTAATTCCCTC-TGATTCATGTTAGATCA 1909
Query 1917 AATT-TTGTTATCCATTGTATCCTATACAAAGAAACATTCTTTCAATGTTCTCAAAACTG 1975
| | ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1910 A-TCATTGTTATACATTGTATCCTATACAAAGAGACATTCTTTCAATGATCTCAAAACTG 1968
Query 1976 GTTTGAACATTGAACAAAAAAGGGACTAATAAGAGGAAATGTTAAGACTTGAACCACTTG 2035
||||||||| |||||| ||| || ||||||||||||| |||||||||||| |||||||||
Sbjct 1969 GTTTGAACACTGAACACAAATGG-ACTAATAAGAGGACATGTTAAGACTTAAACCACTTG 2027
Query 2036 ATTCTGTATTTTGCTC 2051
||| |||||||||||
Sbjct 2028 GTTCGGTATTTTGCTC 2043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101656103625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5