BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484283
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03740.1 | Symbols: | late embryogenesis abundant domain-co... 1026 0.0
> AT2G03740.1 | Symbols: | late embryogenesis abundant domain-containing
protein / LEA domain-containing protein | chr2:1142725-1143988
REVERSE LENGTH=857
Length=857
Score = 1026 bits (555), Expect = 0.0
Identities = 615/644 (95%), Gaps = 3/644 (0%)
Strand=Plus/Plus
Query 1 TCTAACAAACTAAACTCTTTCC-TTTGATTCTGTTTGCTCCCAAAAACACACATTTACAC 59
|||||||||||||||||||||| |||||||||| || |||||||||||||||||||| ||
Sbjct 1 TCTAACAAACTAAACTCTTTCCTTTTGATTCTGCTTACTCCCAAAAACACACATTTAAAC 60
Query 60 ATCTTAGAGATATGTCGATCTCCGGAGCTGTGCTTAGTGGGTTAGGTCCTTCGTTCTTGA 119
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 ATCTTAGAGAGATGTCGATCTCCGGAGCTGTGCTTAGTGGGTTGGGTCCTTCGTTCTTGA 120
Query 120 TCAGTGGAGGCAAGAGAAGCGGAGTTGGCGGTGGAGCTATGAGAGTTAGCCGGAAGAATG 179
|||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||
Sbjct 121 TCAGTGGAGGCAAGAGAAGCGGCGTTGGCGGTGGAGCTATGAAAGTTGGCCGGAAGAATG 180
Query 180 TGATCATTTCTCCTCAGCGCAAGAAGTCATGGGTCTCGGCGGCCGTGAAAGGTGCTGGCA 239
|||||||| | |||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 181 TGATCATTGCACCTCAGCGCAAGAAGTCATGGGTCTCAGCCGCCGTGAAAGGTGCTGGTA 240
Query 240 ACTCAACGAACGACCCCAAATGGCTTGATGATGCCTCAGAGAAAGCTTCGGAGTACGTGA 299
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 ACTCACCGAACGACCCCAAATGGCTTGATGATGCCTCAGAGAAAGCTTCGGGGTACGTGA 300
Query 300 AGGAGAAGGGAAGT-AATGTGGGAAACGTGTCTGCTCAAAAGGGACAAGAGCTTCAAACT 358
| |||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 AAGAGAAGGGAAGTGAA-GTGGGAAACGTGTCTGCTCAAAAGGGACAAGAGCTTCAAAAT 359
Query 359 CAGATGGAGAGAGCAAAAGACTACATTTTTGGGAAAGCTGGTGAAGCGATGGACTCGGTG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAGATGGAGAGAGCAAAAGACTACATTTTTGGGAAAGCTGGTGAAGCGATGGACTCGGTG 419
Query 419 GCTGAAAATGCAAAGAGAGCTTCGGAGTATGTGACCGAGAAAGGCAAAGAGGCGAAGGAA 478
|||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||
Sbjct 420 GCTGAAAATGCAAAGAGAGCTTCGGATTTTGTGACCGAGAAAGGCAAAGAGGTGAAGGAA 479
Query 479 GAAACTGCTTCAAGGACCGACAAAGCCAAAGATTTTATCGTTGAAAAAGCCGGTGACATC 538
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 GAAACTACTTCAAGGACGGACAAAGCCAAAGATTTTATCGTTGAAAAAGCCGGTGACGTA 539
Query 539 AAAGATACGGCAACGGATATGAGAAACAAAACGTCTAAGTACGTCGGAGATAAAGCAACG 598
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAAGATACGGCTATGGATATGAGAAACAAAACGTCTAAGTACGTCGGAGATAAAGCAACG 599
Query 599 GAGGCTAAAGAAGCAATATTGCCTCCAAAAACTGATGCATAGAT 642
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAGGCTAAAGAAGCAATATTGCCTCCAAAAACTGATGCATAGAT 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30994468699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5