BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484284
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03750.1 | Symbols: | P-loop containing nucleoside triphosp... 1498 0.0
> AT2G03750.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:1147807-1149061
REVERSE LENGTH=1255
Length=1255
Score = 1498 bits (811), Expect = 0.0
Identities = 959/1027 (93%), Gaps = 24/1027 (2%)
Strand=Plus/Plus
Query 61 AAATTATTACAATGGAGGCTTCTGAAGAA--TC-TCACCTTCCAAACTACATGAAAGACG 117
||||||| ||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 88 AAATTATCACAATGGAGGCTTCTAAAGAAGCTCATCACCTTCCAAACTACATGAAAGACG 147
Query 118 ACAACGTTAGTCAAGAAACCAAGAACTTGATCGCTTCTCTACCTTCAGACAAAGATTTCA 177
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 148 ACAACGTTAGTCAAGAAACCAAGAACTTGATCACTTCTCTACCTTCAGACAAAGATTTCA 207
Query 178 TGGGTTATGGTCTCTACAACTACAAAGGTTGTTGGTACTATCCAAACACACTCCAAGCCG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 TGGGTTATGGTCTCTACAACTACAAAGGTTGTTGGTACTATCCAAACACACTCCAAGCCG 267
Query 238 TTCTTGACTTCCAAAAACACTTCAAGCCACGAGGTACCGATATAATCCTCGCTTCTTTGC 297
|||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 268 TTCTTGACGTCCAAAAACACTTCAAGCCACGAGATACTGATATAATCCTCGCTTCTTTGC 327
Query 298 CCAAAGGTGGAACCACTTGGCTCAAATCCCTTGTTTTCGCCGTTGTACATAGAGATAAA- 356
||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||
Sbjct 328 CCAAAGGTGGAACCACTTGGCTCAAATCCCTAATTTTCGCTGTTGTACATAGAGA-AAAG 386
Query 357 TACCGCGAAAACCCC-CAAACCCATCCTCTGCT-TTCACAAAACCCTCATGACCTTGTCC 414
||||||| |||||| ||||| |||||| |||| || |||||||||||||||||||||||
Sbjct 387 TACCGCG-GAACCCCTCAAACACATCCTTTGCTCTT-ACAAAACCCTCATGACCTTGTCC 444
Query 415 CATTTCTTGAGCTTGAGTTATACGCTAATAGCCAAATTCCAGATCTCACAAAGT-TTCCT 473
||||||||||| |||||||||||||||||||||||||||| |||||| |||||| || ||
Sbjct 445 CATTTCTTGAGGTTGAGTTATACGCTAATAGCCAAATTCCGGATCTCGCAAAGTATT-CT 503
Query 474 TCTCCTATGATCTTTTCTACACACACGCACTTACAAGCATTGCGTGAAGCCACTACAAAA 533
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 504 TCTCCTATGATCTTTTCTACACACATGCACTTACAAGCATTGCGTGAAGCCACCACAAAA 563
Query 534 GCTTCTTCACCTTGCAAAATTGTGTATGTGTGTAGAGGTATCAAAGATACGTTTGTCTCC 593
| ||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 564 G---------CTTGCAAAACCGTATATGTGTGTAGAGGTATCAAAGATACGTTTGTCTCC 614
Query 594 GGCTGGCATTATAGAAACATGTTGCATCGCACCAAGATGGATCAAGCCACTTTTGAGCTC 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GGCTGGCATTATAGAAACATGTTGCATCGCACCAAGATGGATCAAGCCACTTTTGAGCTC 674
Query 654 ATGTTTGATGCTTATTGTAGAGGAGTTCTCTTATATGGACCCTATTGGGAACATGTGTTG 713
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 675 ATGTTTGATGCTTATTGTAGAGGAGTTCTCTTATATGGACCTTATTGGGAACATGTATTG 734
Query 714 AGCTATTGGAAAGGGAGCTTGGAAG-ATAAGGAGAATGTTCTTTTCATGAAGTATGAGGA 772
||||||||||||||||||||||||| | |||||||||||||||||||||||||| || ||
Sbjct 735 AGCTATTGGAAAGGGAGCTTGGAAGCA-AAGGAGAATGTTCTTTTCATGAAGTACGAAGA 793
Query 773 GATAATCGAGGACCCTCGTATTCAAGTCAAGAGACTCGCCGAGTTCTTGAAATGTCCATT 832
|||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 794 GATAATTGAGGAGCCTCGTGTTCAAGTCAAGAGACTCGCCGAGTTCTTGGAATGTCCATT 853
Query 833 CACCGCGGAAGAAGAAGAATGTGGATCGGTGGAGGAGATCTTGAAGTTGTGTAGTTTACG 892
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 854 CACCAAGGAAGAAGAAGAAAGTGGATCGGTGGAGGAGATCTTGAAGTTGTGTAGTTTACG 913
Query 893 AAATTTAAGCAATTTGGAGGTTAATAAGAAGGGGACAACGAGAATTGGTCTAGATTCTCA 952
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 914 AAATTTAAGCAATTTGGAGGTTAATAAGAATGGGACAACGAGAATTGGTGTAGATTCTCA 973
Query 953 GATATTTTTTAGGAAAGGTGAAGTCGGTGATTGGAAGAATCATCTTACGCCTCAAATGGC 1012
| | || ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 974 GGTGTTCTTTAGGAAAGGTGAAGTTGGTGATTGGAAGAATCATCTTACGCCACAAATGGC 1033
Query 1013 CAAAACCGTTGATGAGATTATTGAATGTAGACT-GCGAGGTTCCGGTTTGATATTTCAAT 1071
|||||| |||||||||||||||| | |||||| | ||| |||||||||||||||||||
Sbjct 1034 GAAAACCTTTGATGAGATTATTGACTATAGACTAG-GAGACTCCGGTTTGATATTTCAAT 1092
Query 1072 AAGGTTG 1078
|||||||
Sbjct 1093 AAGGTTG 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52810973340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5