BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484285
Length=1214
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03760.1 | Symbols: ST, ATST1, RAR047, ST1, AtSOT1, AtSOT12,... 1655 0.0
> AT2G03760.1 | Symbols: ST, ATST1, RAR047, ST1, AtSOT1, AtSOT12,
SOT12 | sulphotransferase 12 | chr2:1149337-1150663 REVERSE
LENGTH=1327
Length=1327
Score = 1655 bits (896), Expect = 0.0
Identities = 1141/1251 (91%), Gaps = 49/1251 (4%)
Strand=Plus/Plus
Query 1 ATTCTACGTGCTCTTCAAGTAAAGGATGTGTTGACCA---CTCCACCCAAAATAATATCT 57
||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 1 ATTCTACGTGCTCTTCAAGTAAAGGATGTGTTGACCATTTCACCACCCAAACTAATATCT 60
Query 58 TAGAAGCAAAAGAGATTGTGCTATTTACTTGTAGAACAAAC-T-TC--TCATACAT-ATA 112
|||||||||||| |||||| ||||||||||||||||| | | || ||||| || | |
Sbjct 61 TAGAAGCAAAAG-CATTGTGAAATTTACTTGTAGAACAACCTTCTCATTCATATATAAAA 119
Query 113 -TA-A-AAGC---A-CA-CA-AG---CAT-TAGAGCTTAAGCAAAAGATCTC--A----C 153
| | |||| | || || || ||| ||||||||||||||||||||| | |
Sbjct 120 GCAGACAAGCATTAGCATCATAGATACATAGAGAGCTTAAGCAAAAGATCTCATACTTTC 179
Query 154 -------A-C--T-T-TCAA-----AACAATG---TCATCATCATCAGTTCCTGATTACT 193
| | | | |||| ||||||| ||||||||||||||||||| |||||
Sbjct 180 AAGATTGATCGATCTCTCAAGTCTCAACAATGTCATCATCATCATCAGTTCCTGCTTACT 239
Query 194 TGAGAGATGATGATGTGACACAAGAAGCAAGAGATCTGATCTCTTCTCTTCCAAAAGAGA 253
|| ||||||| ||| ||||||||||| |||||| |||||||||||||||||| |||||||
Sbjct 240 TGGGAGATGAAGATCTGACACAAGAAACAAGAGCTCTGATCTCTTCTCTTCCTAAAGAGA 299
Query 254 AAGGTTGGTTAGTGAGTGAAATGTATCAATACCAAGGACGTTGGCACACACAAGCTCTGT 313
|||||||||||||||||||||| ||| ||| |||||||| |||||||||||||||| | |
Sbjct 300 AAGGTTGGTTAGTGAGTGAAATATATGAATTCCAAGGACTTTGGCACACACAAGCTATTT 359
Query 314 TACAAGGAATCTTGATCTGCCAAAAACGCTTTGAAGCTAAAGATTCCGACATTATCCTCG 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TACAAGGAATCTTGATCTGCCAAAAACGCTTTGAAGCTAAAGATTCCGACATTATCCTCG 419
Query 374 TGACTAATCCTAAATCAGGTACCACTTGGTTAAAAGCTCTTGTCTTTGCTCTCCTTAACC 433
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCACTAATCCTAAATCAGGTACCACTTGGTTAAAAGCTCTTGTCTTTGCTCTCCTTAACC 479
Query 434 GACACAAGTTTCCAGTTTCTTCTTCTGGTAATCATCCTCTTCTGGTTACCAATCCGCATC 493
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |
Sbjct 480 GACACAAGTTTCCAGTTTCTTCTTCTGGTAACCATCCTCTTCTGGTCACCAATCCACACC 539
Query 494 TTCTTGTGCCCTTCTTGGAAGGAGTTTACTACGAGTCCCCAGATTTCGATTTCTCCGGGT 553
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 540 TTCTTGTGCCCTTCTTGGAAGGAGTTTACTACGAGTCCCCAGATTTCGATTTCTCCAGTT 599
Query 554 TGCCTTCTCCAAGACTGATGAACACGCACATATCACATCTTTCGCTGCCCGAGTCTGTTA 613
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 600 TGCCTTCTCCAAGACTGATGAACACGCACATATCGCATCTTTCGCTCCCCGAGTCTGTTA 659
Query 614 AGAGCTCCTCTTGTAAGATTGTGTATTGTTGTAGGAACCCTAAGGACATGTTTGTCTCCT 673
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 660 AGAGCTCGTCTTGTAAGATTGTGTATTGTTGTAGGAACCCTAAGGACATGTTTGTGTCCT 719
Query 674 TGTGGCATTTTGGGAAGAAGCTAGCTCCTGAGGAAACCGCGGATTATCCTATCGAAAAAG 733
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TATGGCATTTTGGGAAAAAGCTAGCTCCTGAGGAAACCGCGGATTATCCTATCGAAAAAG 779
Query 734 CGGTTGAAGCGTTTTGTGAAGGGAAGTTAATAGGTGGACCTTTTTGGGATCATATATTGG 793
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 780 CGGTTGAAGCGTTTTGTGAAGGGAAGTTTATAGGTGGACCCTTTTGGGATCATATATTGG 839
Query 794 AGTATTGGTATGCAAGCCGCGAGAATCCGAACAAGGTCTTGTTTGTTACTTACGAGGAGC 853
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGTACTGGTATGCAAGCCGCGAGAATCCGAACAAGGTCTTGTTTGTTACTTACGAGGAGC 899
Query 854 TTAAGAAGCAAACCGGAGCTGAGATGAAGCGGATCGCTGAGTTCTTGGGATGTGGTTTTA 913
| |||||||| |||| || |||||||||||||||||| |||||||||| |||||| ||||
Sbjct 900 TAAAGAAGCAGACCGAAGTTGAGATGAAGCGGATCGCGGAGTTCTTGGAATGTGGCTTTA 959
Query 914 TTGAAGAAGAAGAAGTGAAAGAGATCGTGACGTTGTGTAGCTTTGAGAGTTTAAGTAAAT 973
|||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |
Sbjct 960 TTGAAGAAGAAGAAGTGAGAGAGATTGTGAAGTTGTGTAGCTTTGAGAGTTTAAGTAATT 1019
Query 974 TGGAAGTTAATAAGGAAGGGAAATTGCCAAATGGAATGGAGACTAAAACTTTCTTTAGAA 1033
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1020 TGGAAGTTAACAAAGAAGGGAAATTGCCAAATGGAATAGAGACTAAAACTTTCTTTAGAA 1079
Query 1034 AAGGAGAAATTGGAGGATGGAGAGATACTTTGAGTGAGTCCTTGGCAGAGGAAATTGATA 1093
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1080 AAGGAGAGATTGGAGGATGGAGAGATACTTTGAGTGAGTCATTGGCAGAGGAAATTGATA 1139
Query 1094 GAACCATTGAAGAGAAGTTTCAAGGTTCTGGTCTAAAATTCTCTTCTTGAATCAATCTTT 1153
|||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||
Sbjct 1140 GAACCATTGAAGAGAAGTTTAAAGGTTCTGGTCTTAAATTTTCTTCTTGAATCAATCTTT 1199
Query 1154 GAAACTTGTTCTCATGTTTTTGTTTTGCTTCAATTATGTTAAT-CATGTTT 1203
|||||||||||||||||| |||||||||||||||||||||| | | |||||
Sbjct 1200 GAAACTTGTTCTCATGTTCTTGTTTTGCTTCAATTATGTTATTTCTTGTTT 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59638247460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5