BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484287
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03780.1 | Symbols: | Translin family protein | chr2:115246... 1738 0.0
> AT2G03780.1 | Symbols: | Translin family protein | chr2:1152467-1154291
REVERSE LENGTH=1119
Length=1119
Score = 1738 bits (941), Expect = 0.0
Identities = 1064/1123 (95%), Gaps = 9/1123 (1%)
Strand=Plus/Plus
Query 1 AGACAGATGTTGAGTTGTTCTTCATCGGCGTTCCAAAGAGTAGCCTTTATGCTAATGGCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 AGACAGATGTTGAGTTGTTCTTCATCGGCGTTCCAAAGAGTAGCCTTTATGCTTATGGCT 60
Query 61 CCCAAATTAAAACCTCAGAGACTCCATCAAATTGCAGAGACTGGTGTAGAACAATTGGTT 120
|||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 61 CCCAAATTAAAACCTCAGAGACTCCATCAAATTGCAGAGAGTGGTGTTGAACATTTGGTT 120
Query 121 AAGAAAGCTAGGACGATGAGTACTGAATCCTCCATGAAAGATGCTTTCTCTACTTACGCT 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 AAGAAAGCTAGGACGATGAGTACTGAATCCTCAATGAAAGATGCTTTCTCTACTTACGCT 180
Query 181 GATTATCTCAATAACTTCAATGAGAAGAGGGAAAGAGTTGTGAAGGCAAGTCGTGATATC 240
||||||||||||||||||||||||||| | |||||||| ||||||| |||||||||||||
Sbjct 181 GATTATCTCAATAACTTCAATGAGAAGCGAGAAAGAGTGGTGAAGGTAAGTCGTGATATC 240
Query 241 ACAATGAACAGTAAAAAAGTTATCTTTCAGGTTCACAGGCTTAGTAAAGACAACAAAGAG 300
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 ACAATGAACAGCAAAAAAGTTATCTTTCAGGTTCACAGGCTCAGTAAAGACAACAAAGAG 300
Query 301 GAGGTTTTGGAGAAAGCAGGGAAGGATTTAGAAGCAGTGAGGGATCAACATTTTGCCCGG 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGGTATTGGAGAAAGCAGGGAAGGATTTAGAAGCAGTGAGGGATCAACATTTTGCCCGG 360
Query 361 CTAATGAGAGAACTTCAAGGGACTGATTTTTGGAAGCTGAGACGAGCTTATTCCCCAGGG 420
||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 CTAATGAAAGAGCTTCAAGGGACTGATTTTTGGAAGCTGAGACGTGCTTATTCCCCAGGG 420
Query 421 GTGCAGGAATATGTTGAGGCTGCAACGTTTTATAAGTTCTGTTTGTCTGGGACTCTATGT 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GTGCAGGAATATGTTGAAGCTGCAACGTTTTATAAGTTCTGTTTGTCTGGGACGCTATGT 480
Query 481 ACTCTCGATGAGATTAACACAACGCTTGTACCACTTAGTGACCCTTCATTAGAGCCGTTG 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 ACTCTCGATGAGATTAACACAACGCTTGTACCACTTAGTGACCCTTCTTTAGAGCCGTTG 540
Query 541 CAGATCAATATCCTTGACTATATTCTTGGGCTTGCGGATCTGACTGGAGAGCTAATGCGA 600
|||||||||||||| |||||||||||||||||||| ||| |||| ||||||||||||||
Sbjct 541 CAGATCAATATCCTCGACTATATTCTTGGGCTTGCAGATTTGACGGGAGAGCTAATGCGG 600
Query 601 ATGGCAATTGGTCGCATATCAGATGGTGAAATCGAATTCGCGCAGAGGATTTGCCAGTTT 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 601 ATGGCAATTGGTCGCATATCAGACGGTGAAATCGAATTCGCGCAGAGGATTTGTCAGTTT 660
Query 661 GTTCGACAGATTCATAGGGAACTTATGCTAGTTGTGCCAAAGATGGATGACAGTTACGAC 720
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 661 GTTCGACAGATTCATAGGGAACTAATGCTAGTTGTGCCAAAGATGGATGACAGTTATGAC 720
Query 721 ATGAAATCCAAGATGGAAGTGATGCTTCAAAGTGTGATCAAAATAGAGAACGCTTGCTTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGAAATCCAAGATGGAAGTGATGCTTCAAAGTGTGATCAAAATAGAGAACGCTTGCTTT 780
Query 781 AGCGTCCACGTGAGAGGATCAGAGTATATTCCGCTGCTTGGAGATGATGCGCCAACATCG 840
||||| ||||||||||||| |||||||||||| |||||||||||| |||| ||||||||
Sbjct 781 AGCGTTCACGTGAGAGGATTAGAGTATATTCCACTGCTTGGAGATAATGCACCAACATCA 840
Query 841 TACCTATTGGGAGCTGCTGATGTCGAGTGATTAAAAGTGAGTGGTCTTTTCCGTCTCTCA 900
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 TACCTATTGGGAGCTGCTGATGTCGAATGATTAAAAGTGAGTGGTCTTTTCCGTCTCTCG 900
Query 901 GACACATTTCTAG-GTTCTTGTTAAGGTTGTTGTGTTTGCGACAAGTAGTATCGTTTTAA 959
||||||||| || |||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 901 GACACATTT-TAAAGTTCTTGTTAAGGTTGGTGTGTTTGCGACAAGTAGGATCGTTTTAG 959
Query 960 TATGCACTTATCTTCAGAGAATTTTAGCCACTTCTTGCTTCTGAGGAACTTTAAATCTCT 1019
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 960 TATGGACTTATCTTCAGAGAATTTTAGCCACTTCTTACTTCTGAGGAACTTTAAATCTGT 1019
Query 1020 ATGCTGCAAGACTTTTTAA-AAACGAATGGTTAGAACAAGTTGTAGAACTTATCTGTTT- 1077
|||||||||||||||| || |||| |||||||||||| || |||| ||||| ||| |||
Sbjct 1020 ATGCTGCAAGACTTTT-AAGAAACAAATGGTTAGAACTAGATGTAAAACTTTTCT-TTTG 1077
Query 1078 TTGAATGCAAGCT--TTTATTGATAGAATCTAGCAGTTACTTT 1118
||||||| ||||| ||||| ||||||||||||| |||||||
Sbjct 1078 TTGAATGGAAGCTAATTTATA-ATAGAATCTAGCAATTACTTT 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54818995140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5