BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484289
Length=1842
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03810.1 | Symbols: | 18S pre-ribosomal assembly protein ga... 2290 0.0
> AT2G03810.1 | Symbols: | 18S pre-ribosomal assembly protein
gar2-related | chr2:1162523-1164573 FORWARD LENGTH=1787
Length=1787
Score = 2290 bits (1240), Expect = 0.0
Identities = 1427/1517 (94%), Gaps = 14/1517 (1%)
Strand=Plus/Plus
Query 197 GATTGTT--TCTCGAGCCGGTTGCTTGAAGATATAGCTCTGGTTCTTTATGCAAGATTTA 254
||||||| || ||| | || ||||||||||||||||| |||||||||||||||| ||||
Sbjct 110 GATTGTTGGTCGCGA-CTGG-TGCTTGAAGATATAGCTTTGGTTCTTTATGCAAGGTTTA 167
Query 255 CTCTCTTAGAAGAATGAGAGCAGATAATGATCACGCGCTTGGTAACTCGGTAGAGATTTG 314
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 168 CTCTCTTAGAAGAATGAGAGCAGATAATGATCACGCGCTTGGTAACTCGATAGAGATTTG 227
Query 315 CAAAGATGAATCTAAGCCTCATCAATGCCTTGAAGAGAACTGGGAAGATGCAGAGCTAAA 374
||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 228 TAAAGATGAATCTAAGCCGCATCAATGTCTTGATGAGAATTGGGAAGATGCAGAGCTAAA 287
Query 375 GGTCCCGGAAAATGGGAAGAACAACAACAATGTGTGTGAGTTGTTCTATGATACAAGAAG 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 GGTCCCGGAAAATGGGAAGAACAACAACAATGTGTGTGAGTTGTTCTATGATACAAGAAG 347
Query 435 CGGCGACGAATGGGATAATGAGGCCGGAAAGAAAGTCCGAGATATTAGTCATGATTGTGA 494
|| || |||||||| |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 348 TGGTGAAGAATGGGAGAATGAGGCCGGAAAGAAAGTTCGAGATACTAGTCATGATTGTGA 407
Query 495 TGCTAATGTGGATTCTCCTGATAAAAAGGATCCGGTTTTCTATATGGACAAGAATGTTAC 554
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 408 TGCTAATGTGGATTCTCCTGAGAAAAAGGATCCGGTTTTCTATATGGACAAGAATGTTAC 467
Query 555 GGCCTGTGATTTACCTGAGATTGTTGTTTGTTACAAGGAGGATACTTACCACGTCGTCAA 614
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 468 GGCCTGTGATTTACCTGAGATTGTTGTTTGTTACAAGGAGAATACTTACCATATCGTCAA 527
Query 615 AGATATATGTGTCGATGAAGGTGTGCCTGTTCAGGAGAAGTTCTTATTCGGCGAGAAGGA 674
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 528 AGATATATGTGTCGATGAAGGTGTGCCTGTTCAGGAGAAGTTCTTATTTGGTGAGAAGGA 587
Query 675 TTCTGTAAAGTCTAGCTCAACAGAGGATTTGACGAAAGCAGACAAAACAAATGTGAATCC 734
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 588 TTCTGTCAAGTCTAGCTCAACAGAGGATTTGATGAAAGCAGACAAAACAAATGTGAATCC 647
Query 735 TTCAGAAACTAAGTCTGCGGAAGACAGCAACAGTAAGGTTGATGATTCTGAATTCTGTAA 794
|||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||
Sbjct 648 ATCAGAAACTAAGTCTGCGGAAGACAGCATCAGTAAGGTTGATGATTCTGAGTTTTGTAA 707
Query 795 CAATTGTAAGACAGACAGAGATGTTGAAGAATCTTCAAGAGAAGATTTTGCTGATGATGA 854
| || ||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 708 CGATCATAAGACAGACAGAGATGTTGAAGAATCTTCAGGAGAAGATTTTGCTGATGCTGA 767
Query 855 AGG---TTCTAGCGCTTACAATCAAGAGCATTTGATTGTGACAGAGGAAGCCAAGGCTTC 911
||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 768 AGGTACTTCTAGCAATTACAATCAAGAGCATTTGATTGTGACAGAGGAAGTCAAGGCTTC 827
Query 912 ACCCTCGCATGGGCTAAATCCATCTGAAATTGAACCTGATGAGAATTCAAAGGACGAAGT 971
||| | |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 828 ACCAACACATGGGCTAAGTCCCTCTGAAATTGAACCTGATGAGAATTCAAAGGACGAAGT 887
Query 972 GGCTATATCATC-GGAGACTGACTCAAAGGAATCTTTAACCTTGGGAGATATTCTATCAA 1030
|||||||||| | ||| | |||||||||||||| |||||| |||||||||||||||||||
Sbjct 888 GGCTATATCA-CAGGATAATGACTCAAAGGAATGTTTAACATTGGGAGATATTCTATCAA 946
Query 1031 GGGAAGATGAACAAAAATCTCTCAACCACGGTAACATTAGCAGCGATAGTCATGAAGAAC 1090
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 947 GGGAAGATGAACAAAAATCTCTCAACCAAGACAACATTAGCAGCGATAGTCATGAAGAAC 1006
Query 1091 AATCTCCTTCTCAGCTTCAGGATAAAGAAAAAAGAAGCTTAGAAACCACAGCTCTCGAAA 1150
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1007 AATCTCCTTCTCAGCTTCAGGATAAGGAAAAAAGAAGCTTAGAAACCACAGCTATCGAAA 1066
Query 1151 CAGAGCTTGAGAAAACAGAGGAGCCAAAACCAGCAGAGGAGAAGATTTCCTCTGCTTCTA 1210
|||||||||||||||||||||||||||||| || |||||||||| ||||||||| |||||
Sbjct 1067 CAGAGCTTGAGAAAACAGAGGAGCCAAAACAAGGAGAGGAGAAGCTTTCCTCTGTTTCTA 1126
Query 1211 CAACGACCCT-TCAAGAACCAAATAAAACTTGCAACGACCCTGAAAAGCCTGAAACTGAG 1269
|||||| ||| |||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1127 CAACGA-CCTCTCAAGAACCAAACAAAACTTGCAACGAACCTGAAAAGCCTGAAACTGAG 1185
Query 1270 AATCATCATCAGCAAAATTCCTTAGTGGAAAACTCTTACGAAGATGATAAACTTTCCTCA 1329
||||||||||||||||| | ||||||||||||||||||||||| |||||| |||| |||
Sbjct 1186 AATCATCATCAGCAAAACTGTTTAGTGGAAAACTCTTACGAAGACGATAAATTTTCTTCA 1245
Query 1330 AGCAGATTTGGAGAGACGAGTTTCTCTGCAGCAGAGTCAGTTTCAATCTCAGGTCATATA 1389
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1246 AGCAGATTTGGAGAGACGAGTTTCTCTGCAGCAGATTCAGTTTCAATATCAGGTCATATA 1305
Query 1390 ACATACTCAGGACCAATTGCATACTCTGGAAGCCTTTCTGTTCGATCCGATGCAAGCACA 1449
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1306 ACATACTCAGGACCAATTGCATACTCTGGAAGCCTCTCTGTTCGATCAGATGCAAGCACA 1365
Query 1450 ACGAGTGGAAGATCCTTTGCTTTCCCCATATTGCAATCAGAATGGAACAGCAGTCCTGTA 1509
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1366 ACGAGTGGAAGATCCTTTGCTTTCCCAATATTGCAATCAGAATGGAACAGTAGTCCTGTA 1425
Query 1510 AGAATGGCGAAAGCTGACAAGAGAAGACAAAAAGGAGGATGGAGACACACTCTTCTCTGC 1569
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1426 AGAATGGCGAAAGCTGATAAAAGAAGACAAAAAGGAGGATGGAGACACACTCTTCTCTGC 1485
Query 1570 TGTAGATTCTCTTGATGTCTCTCCTCCACAATTTAGTCCTAAAGCTTTTCACTTTGAAGC 1629
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1486 TGTAGATTCTCTTGATGTCTCTCCTCCACAATTTAGTCCTAAAGCTATTCACTTTGAAGC 1545
Query 1630 ACAGAGgaagaagaagaagaaga--aa-gaTTTATGAAATTTTACAGTATTTTCTTACAA 1686
||||| ||||||||||||||||| || |||||||||||||||| | |||||||||| ||
Sbjct 1546 ACAGAAGAAGAAGAAGAAGAAGAGGAAAGATTTATGAAATTTTATAATATTTTCTTAAAA 1605
Query 1687 TGGGAGTGCtttttttt 1703
|| ||||||||||||||
Sbjct 1606 TGAGAGTGCTTTTTTTT 1622
Score = 178 bits (96), Expect = 2e-43
Identities = 129/143 (90%), Gaps = 9/143 (6%)
Strand=Plus/Plus
Query 1703 TCTCTTTTGGGTGAGTGGTTTA-TAGTTTATTA-TTATGCCTTGGTGTGTAATTGGCATT 1760
|||||||||||||| | | | | ||||| || ||||||||||||||||||| ||||||
Sbjct 1651 TCTCTTTTGGGTGA-T-G---AGTGGTTTA-TAGTTATGCCTTGGTGTGTAATAGGCATT 1704
Query 1761 TTGGTAGTTTAACAGTTTAGGGCTTTTGAGTTTGGAACCAATGAGTT-TATTATAAATTT 1819
|||||||||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||
Sbjct 1705 TTGGTAGTTTTACAGTTTAGGTCTTTTGAGTTTGGAACCGATGAGTTATATTATAAATTT 1764
Query 1820 TTTAATGAAGGGCTCTTTGGATT 1842
|||||||||||||||||||||||
Sbjct 1765 TTTAATGAAGGGCTCTTTGGATT 1787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91164189720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5