BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484294
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03830.1 | Symbols: RGF8 | Encodes a root meristem growth fa... 933 0.0
> AT2G03830.1 | Symbols: RGF8 | Encodes a root meristem growth
factor (RGF). Belongs to a family of functionally redundant
homologous peptides that are secreted, tyrosine-sulfated, and
expressed mainly in the stem cell area and the innermost
layer of central columella cells. RGFs are required for maintenance
of the root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4),
At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830
(RGF8) and At5g64770 (RGF9). | chr2:1171136-1172363
FORWARD LENGTH=678
Length=678
Score = 933 bits (505), Expect = 0.0
Identities = 632/688 (92%), Gaps = 29/688 (4%)
Strand=Plus/Plus
Query 1 CTTTTGGTTGATATaaaagaagagaagaagaagaaaaagaaagatagcac-----a---- 51
||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 CTTTTAGTTGATATAAAAGAAGAGAAGAAGAAGAAAAAGAAAGATAGCACAAAAAAGCTT 60
Query 52 ---a-a-a---aaaaaTCACTTTGAAGAATATGAAGCTAGTTAGAGTCATCTTCTTTCTA 103
| | | |||||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 61 CTCATATAGCTAAAAATCACTTTGAAGAATATGAAGCTAATTAGAGTCACCCTCTTTCTT 120
Query 104 TGTGCATTAGCCATTGTATTGCTTCTGACTCCAACTTCTTCTCTACAACTTAAACCTCCC 163
|||||| |||||||| |||||||| | |||||||| ||||||||||||||||||| ||||
Sbjct 121 TGTGCACTAGCCATTTTATTGCTTGTAACTCCAACATCTTCTCTACAACTTAAACATCCC 180
Query 164 TACTCATCTCCTAGCCAAGGTTTGAGCAAAAAGATTGTTACGAAAATGGTGACGCGAAAG 223
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 181 TACTCATCTCCTAGCCAAGGTTTAAGCAAAAAGATTGTTACGAAAATGGCGACGCGAAAG 240
Query 224 CTCATGATCATCTCTAGTGAACATGTGATGACGTCAACAGT-TCATGAAGGTTCGAGCGA 282
||||||||||||||||||||| |||||||||| |||||| | |||||||||||| |||||
Sbjct 241 CTCATGATCATCTCTAGTGAATATGTGATGACATCAACA-TCTCATGAAGGTTCAAGCGA 299
Query 283 ACAACTTCAAGTCACTTCTTCAGgaagatctaaagg-tgaagagaagaaactaagtgaag 341
|||||||| ||||||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct 300 ACAACTTCGAGTCACTTCTTCAGGAAAATCT-AAGGATGAAGAGAAGAAACTAAGTGAAG 358
Query 342 aagaagaagagaagaaagCTTTATCGAAATATCTATCGATGGATTATCGTACGTTTAGAA 401
||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 359 AAGAAGAAGAGAAAAAAGCTCTAGCGAAATATCTATCGATGGATTATCGTACGTTTAGAA 418
Query 402 GAAGACGGCCAGTTCACAACAAGGCTTTACCTCTTGATCCATGAAAACATTATATTATTT 461
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAAGAAGACCAGTTCACAACAAGGCTTTACCTCTTGATCCATGAAAACATTATATTATTT 478
Query 462 CAGAATAACTAATAAAAGTTTTAGCTAGATTAATATTTGTTATTAGGATGGTTATTGGTT 521
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 479 CAAAATAACTAATAAAAGTTCTAGCTAGATTAATATTTGTTATTAGGATGGTTATTGGTT 538
Query 522 AATTGGTTGTAGTAACGTAGTTTAGTTTCTTTGGGACCATTGAGGAACAAGTTTTGGCGA 581
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 AATTGGTTGTAGTAACGTAGTTTAGTTTCTTTGG-ACCATTGAGGAACAAGTTTTGGCGA 597
Query 582 TATTATTGTAATTAACGGAACATGTTCGTGTTATTTTTTATGTAGTTTTAATTAATGATA 641
||||||||||||||| |||||||||||||||||||||| | || | | |||||||||
Sbjct 598 TATTATTGTAATTAAAGGAACATGTTCGTGTTATTTTTC-T-TA-T---A-TTAATGATA 650
Query 642 ATGGCCGACAAAACACTAAAACTCTGGT 669
||||||||||||||||||||||||||||
Sbjct 651 ATGGCCGACAAAACACTAAAACTCTGGT 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32350790668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5