BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484296
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02430.1 | Symbols: | Protein of unknown function (DUF679) ... 575 2e-163
> AT3G02430.1 | Symbols: | Protein of unknown function (DUF679)
| chr3:499345-500174 FORWARD LENGTH=830
Length=830
Score = 575 bits (311), Expect = 2e-163
Identities = 364/389 (94%), Gaps = 6/389 (2%)
Strand=Plus/Plus
Query 378 ACCCGATTTAGCCAAATATCGGATGTGGGTCGTTGATTGGATCCACGCTACGTTGTCGGT 437
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 417 ACCCGATTTAGCCAAATATCGGATGCGGTTCGTTGATTGGATCCACGCTACGTTGTCGGT 476
Query 438 TTTAGTGTTTGGAGCGGTTGCGTTGAGAGATAAATATATAACTGATTGCTTTTGTCCGTC 497
|||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct 477 TTTAGTGTTTGGAGCGGTTGCGTTGAGAGACAAGTATATAACTGATTGCTTTTATCCGTC 536
Query 498 GCCGGAGGCAGAGACGAAACATGTCTTGGATATTGTTCCGGTGGGTGTTGGGGTTATGTG 557
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 537 GCCGGAGGCAGAGACGAAACATGTCTTGGACATTGTTCCGGTGGGTGTTGGGGTTATGTG 596
Query 558 TAGCCTTTTGTTTATGGTTTTTCCGGCGAGGCGTCACGGGATTGGATATCTTGTTACCGG 617
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 597 TAGCCTTTTGTTTATGGTTTTTCCGGCGAGACGCCACGGAATTGGATATCTTGTTACCGG 656
Query 618 TAGCGTTGATCGCCGGTGATTTACATTTAAA-CCAATT-AGAAACGGTAGCGTTTTCATG 675
|||||| |||||||| ||||||| | ||||| |||||| |||||||||||||||| ||||
Sbjct 657 TAGCGTAGATCGCCGATGATTTATAATTAAAACCAATTTAGAAACGGTAGCGTTTGCATG 716
Query 676 GTGGGTTGACTATTTACGTTTGTTTCCTTGTTTGTAAAGTTGTATAATTTGTAT-TCATA 734
||||||||||||||| ||||||||| |||||||||||||||||||||||||||| | |||
Sbjct 717 GTGGGTTGACTATTTTCGTTTGTTTTCTTGTTTGTAAAGTTGTATAATTTGTATAT-ATA 775
Query 735 CGCTATGAACTATTATTCTTTTAAT-AAA 762
|| ||||| | ||||||||||| || |||
Sbjct 776 CGTTATGACC-ATTATTCTTTTTATTAAA 803
Score = 215 bits (116), Expect = 6e-55
Identities = 124/128 (97%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 84 GCGAGCCATGTCAAACACCCTGACGTCAGCAGCCAATCTCTCAAACCTCCTCCCGACGGG 143
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 129 GCGAGCCATGTCAAACACCCTGACGTCAGCAGCCAATCTCTCAAACCTACTCCCAACGGG 188
Query 144 AACACTCCTCGCGTTTCAACTCCTAACGCTGGTTTTCACTTCAAACGGCGTTTGCGACCT 203
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 189 AACACTCCTCGCGTTTCAACTCCTAACGCCGGTTTTCACTTCAAACGGCGTTTGCGACCA 248
Query 204 CGCAACGC 211
||||||||
Sbjct 249 CGCAACGC 256
Score = 174 bits (94), Expect = 1e-42
Identities = 108/115 (94%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 213 CTCCTTCACCGATAGCGTTAAAGCCGAGGATGTAACTATCTACTTCGATTTCGTCACGTT 272
|||||| |||||||||||||||||||| |||| |||||||||||||| |||||| |||||
Sbjct 309 CTCCTTTACCGATAGCGTTAAAGCCGACGATGGAACTATCTACTTCGGTTTCGTAACGTT 368
Query 273 CAAAGGCATGTGGGTCGTTGACTATCCTGACCTGTCCGGGTTGGGTTTACCCGAT 327
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 369 CAAAGGCATGTGGGTCGTTGACTATCCTGACCCGTCCGGGTTAGGTTTACCCGAT 423
Score = 126 bits (68), Expect = 3e-28
Identities = 78/83 (94%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 2 TGTCTGCCCTTCGGCTAAGAAACGCAAACACTCCAGCTCCGGAGCTTGACGAGTTTTCCG 61
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 17 TGTCTGCCCTTCGGCTAAGAAACGCAAACACTCCGGCTCCGGAGCTCGACGAGTTATCCG 76
Query 62 ATCAGATACCGTCAGAATCACGG 84
|||||| |||||||||||| |||
Sbjct 77 ATCAGACACCGTCAGAATCCCGG 99
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5