BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484297
Length=701
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03850.1 | Symbols: | Late embryogenesis abundant protein (... 922 0.0
> AT2G03850.1 | Symbols: | Late embryogenesis abundant protein
(LEA) family protein | chr2:1175581-1176702 FORWARD LENGTH=753
Length=753
Score = 922 bits (499), Expect = 0.0
Identities = 632/694 (91%), Gaps = 18/694 (3%)
Strand=Plus/Plus
Query 19 AATCTCATGGCGATGTCGATCTCCGGTAG-TGTGCTTAATGGTTTGGGTTCTTCGTTCTT 77
|||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct 67 AATCTCATGGCGATGTCGATCTCCGG-AGCTGTGTTTAATGGTTTGGGTTCTTCGTTCTT 125
Query 78 GATCAGCCGAGGCAAGAGAAGC-G-G-T-G--TTGGCCTAGTAGCTACGAGGGTTGGGCG 131
|||||| ||||||||||||||| | | | | ||||| ||||||||| ||||||||| ||
Sbjct 126 GATCAGTCGAGGCAAGAGAAGCGGCGTTGGACTTGGCGTAGTAGCTATGAGGGTTGGCCG 185
Query 132 GAAGAATGTGATCATTTCACCTAAGTTCAAGAAGTCGTGGGTTCCGACAGCCGTCAAAGG 191
||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 186 GAAAAATGTGATCACTTCACCTAAGTGCAAGAAGTCGTGGGTTCCGACAGCCGTCAAAGG 245
Query 192 TGATGGAAACTCAAAACTCGACCCCAAATGGCTCGACGATGCCTCACAGAAAGCATCCGA 251
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 246 TGATGGTAACTCAAAACTCGACCCCAAATGGCTCGATGATGCCTCACAGAAAGCTTCCGA 305
Query 252 GTGCGTGAAGGATAAGGGAAGCGAAGTAGGACATGTGTCTGCTCAAAAAGGACAAGAGGT 311
| ||||||||| |||||||||||||| ||||||| ||||||||| ||||| ||||| ||
Sbjct 306 CTACGTGAAGGAGAAGGGAAGCGAAGTGGGACATGCGTCTGCTCAGAAAGGGCAAGATGT 365
Query 312 TAATGATCATATAGAGAGAGCGAAGTACTATATGTTTGAGAAAGCTAGTGAAGCAATCGA 371
|||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 366 TAATGATCATGTAGATAGAGCAAAGTACTATATGTTTGAGAAAGCTAGTGAAGCAATCGA 425
Query 372 CAATGTGGCTGAAATTGCTCAGTTTGCTTCGGAGTTTGTGACGGAGAAAGGCAAAGAGAC 431
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 426 CAATGTGGCTGAAATTGCTCAGTTTGCTTCGGAGTTTGTGACGGAGAAAGGCAAGGAGAC 485
Query 432 GAAGAAAGAAACTGCTTCGATGTCCGAGAAAGCCAAAGACTTCATCGTTGAAAAAGCCGG 491
|||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct 486 GAAGAAAGAAACTGCTTCAATATCGGAGAAAGCCAAAGACTTCATTGTTGAAAAAGCCGG 545
Query 492 AGAAGTTATAGATATAGCCACGGATGTTAGCAAGAAAACGGCTAAGTACGTCGGAGAAAA 551
||| ||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||
Sbjct 546 TGAAATTATAGATATAGCGACGGATGTGAGCAAGAAAACGGCCAAGTACGTCGGAGATAA 605
Query 552 AGC-AGCGGAGGTTAAAGAAGCTATAATGCCTCCAAAACCTTAA-GTATATATATATTTG 609
||| | ||||||||||||||||||||||||||||||| ||||| ||| | | || || |
Sbjct 606 AGCCAA-GGAGGTTAAAGAAGCTATAATGCCTCCAAAAACTTAAAGTA-A-AGAT-TT-G 660
Query 610 ATGCAGCCCTAAACAAATAA-AGATTATTGAGGCAATGTAGCAAAAGG-ATGTATTATTA 667
||||||||||||||| ||| || | ||||||||||||||||||| |||||||||||
Sbjct 661 ATGCAGCCCTAAACATATACGAGGTC-TTGAGGCAATGTAGCAAAAAATATGTATTATTA 719
Query 668 TGCGAGATAATGAAACTTTTATAGTCAGAACTCT 701
||||||||||||||||| ||||| ||||||||||
Sbjct 720 TGCGAGATAATGAAACTGTTATAATCAGAACTCT 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33958283372
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5