BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484298
Length=593
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03870.2 | Symbols: | Small nuclear ribonucleoprotein famil... 715 0.0
> AT2G03870.2 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr2:1179984-1181437 FORWARD LENGTH=669
Length=669
Score = 715 bits (387), Expect = 0.0
Identities = 553/624 (89%), Gaps = 48/624 (8%)
Strand=Plus/Plus
Query 1 TTTGACTGACTCTGATTTTTCGCGGCGACTTCTTGTGAGGTTCTCCGATTGCTTCGCCTG 60
||||||||||||||| |||| | |||||| |||||||| ||||||||||||||||||||
Sbjct 36 TTTGACTGACTCTGA--TTTCAC-GCGACTCCTTGTGAGATTCTCCGATTGCTTCGCCTG 92
Query 61 AG---C-----T---TCT------CGTCACTTAGATCTTTGCTTTTCCGATTTTTAGGGT 103
|| | | ||| |||||||| |||||||||||||||||| |||||||
Sbjct 93 AGTTTCTGGGTTAACTCTCCACGCCGTCACTTTGATCTTTGCTTTTCCGATCTTTAGGG- 151
Query 104 TTTTTCTTT--GG----G--G-A-A-T-T--TCT--GATGTCTGGAAGAAAAGAAACGGT 147
||||| ||| || | | | | | | ||| |||||||||||||||||||||||
Sbjct 152 TTTTTGTTTAGGGAATTGTCGAAGACTCTGCTCTAACATGTCTGGAAGAAAAGAAACGGT 211
Query 148 TTTAGATTTGGCCAAGTTTGTGGATAAGGGTGTGCAAGTTAAGCTCACTGGTGGTAGACA 207
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 212 TTTAGATTTGGCCAAGTTTGTAGATAAGGGTGTGCAAGTTAAGCTCACTGGTGGTAGACA 271
Query 208 AGTGACTGGAACTCTAAAAGGCTATGACCAATTGCTTAATCTTGTTCTTGATGAAGCATT 267
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 272 AGTGACTGGAACTCTTAAAGGCTATGACCAATTGCTTAATCTTGTTCTTGATGAAGCAGT 331
Query 268 CGAGTTCGTTCGAGATCACGATGATCCTTTGAAGACTACGGATCAGACAAGACGCCTTGG 327
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 332 CGAGTTCGTTCGAGATCATGATGATCCTTTGAAGACTACGGATCAGACAAGACGCCTTGG 391
Query 328 TTTGATTGTTTGCCGTGGAACAGCGGTAATGCTTGTCTCACCAACCGATGGCACTGAAGA 387
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 392 TTTGATTGTTTGCCGTGGAACAGCGGTGATGCTTGTCTCACCAACCGATGGCACCGAAGA 451
Query 388 AATCGCTAACCCGTTCGTT-CAAGCAGAAGCTGTCTAAAGACTTTCTTCCCAAACAATAT 446
||||||||||||||||||| | ||||| |||||||||||||||||||| |||| |||||
Sbjct 452 AATCGCTAACCCGTTCGTTACT-GCAGAGGCTGTCTAAAGACTTTCTTCTCAAAGAATAT 510
Query 447 GTCTCTCTATTAGTTTAACTTGGCCATTTAGAGAGTATTTTATCTGACTCTCTCGTGTGA 506
|||||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||
Sbjct 511 GTCTCTCTATTAGTTTAACTTGGCGATTTAGAGAGTATTTCATCTAACTCTCTGGTGTGA 570
Query 507 TGTTGGAAACATATATGTTCAATTTAAACTATTTGGAACATCATTGGCACTTCTTCTTGT 566
||||||||||||||||||||||||||||| |||||||||||||| || || |||
Sbjct 571 TGTTGGAAACATATATGTTCAATTTAAACAATTTGGAACATCAT-GG-ACA-CTT----- 622
Query 567 TACCTAACTTCGTTCTCAAATCTC 590
|||||||||||||||||||||||
Sbjct 623 -ACCTAACTTCGTTCTCAAATCTC 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28532995496
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5