BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484305
Length=2664
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04030.1 | Symbols: CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90... 4296 0.0
> AT2G04030.1 | Symbols: CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5
| Chaperone protein htpG family protein | chr2:1281841-1286104
FORWARD LENGTH=2680
Length=2680
Score = 4296 bits (2326), Expect = 0.0
Identities = 2567/2679 (96%), Gaps = 34/2679 (1%)
Strand=Plus/Plus
Query 1 TCACTCTCCTTAAACCTTTTATAGGGTTTTTAGGTTACTCTTTGTTCAACTACTACTACT 60
||||||||||||||||||| |||||||||||||||||||||||||| | | ||||||
Sbjct 13 TCACTCTCCTTAAACCTTTAATAGGGTTTTTAGGTTACTCTTTGTT---C-A--ACTACT 66
Query 61 ACAAACTCTTCTCTCTTTAGAGATTGAGAGATT-T-GACAAATCTCAAATC-TTTCCTTC 117
|||||||||| |||||||||||||||||||||| | | |||||||||||| ||||||||
Sbjct 67 ACAAACTCTTTTCTCTTTAGAGATTGAGAGATTGTAAAAAAATCTCAAATCTTTTCCTTC 126
Query 118 ACAACTTTC-AATCTAATGGCTCCTGCTTTGAGTAGAAGTCTCTACACAACTCCTTTGAC 176
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 127 ACAACTTTCAAATCTAATGGCTCCTGCTTTGAGTAGAAGTCTCTACACATCTCCTTTGAC 186
Query 177 TTCAGTTCCAATCActcctctctcttctcgtctctctcATCTGCGAAGCTCGTTTCTGCC 236
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||
Sbjct 187 TTCAGTTCCAATCACTCCTGTCTCTTCTCGTCTCTCTCATCTGAGAAGCTCGTTTCTCCC 246
Query 237 TCGCGGCGGCGCTCTAAGAACCGACCTTTCGTGTAGTTGGAATCTCGAGAAA-AGATGTA 295
| |||||||||| ||||||||| | |||||||||| ||||||||||| ||| |||||||
Sbjct 247 ACACGGCGGCGCTTTAAGAACCGGCGTTTCGTGTAGCTGGAATCTCGA-AAAGAGATGTA 305
Query 296 ATCGATTCGCCGTGAAGTGTGACGCCGCCGTGGCGGAGAAAGAAACGACTGAAGAAGGGT 355
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 306 ACCGATTCGCCGTGAAGTGTGACGCCGCCGTGGCGGAGAAAGAGACCACTGAAGAAGGGT 365
Query 356 CTGGTGAGAAGTTTGAGTACCAAGCTGAGGTTAGTAGATTGTTGGATTTGATTGTTCATA 415
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CAGGTGAGAAGTTTGAGTACCAAGCTGAGGTTAGTAGATTGTTGGATTTGATTGTTCATA 425
Query 416 GCTTATACAGTCACAAGGAGGTATTTCTCAGAGAGCTTGTGAGTAATGCAAGTGATGCTT 475
|||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 426 GCTTATACAGTCACAAGGAGGTGTTTCTCAGGGAGCTTGTAAGTAATGCAAGTGATGCTT 485
Query 476 TGGATAAGCTGAGGTTCTTGAGTGTAACAGAGCCTTCTTTGCTTGGAGATGGTGGAGATC 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TGGATAAGCTGAGGTTCTTGAGTGTAACAGAGCCTTCTTTGCTTGGAGATGGTGGAGATC 545
Query 536 TTGAGATTAGGATTAAGCCTGATCCTGATAACGGCACTATTACCATTACCGATACTGGTA 595
||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||
Sbjct 546 TTGAGATTAGGATTAAGCCTGATCCTGATAACGGCACCATCACCATAACTGATACTGGTA 605
Query 596 TTGGAATGACAAAGGAAGAACTTATAGACTGTCTTGGAACTATTGCTCAAAGTGGTACTT 655
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 606 TTGGAATGACAAAGGAAGAACTTATTGATTGCCTTGGAACTATTGCTCAAAGTGGTACTT 665
Query 656 CGAAATTCTTGAAGGCTCTTAAGGAAAACAAAGACCTTGGTGCTGACAACGGTTTGATCG 715
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 666 CGAAATTCTTGAAGGCTCTAAAGGAAAACAAGGACCTTGGTGCTGACAACGGTTTGATCG 725
Query 716 GACAGTTTGGTGTTGGGTTTTACTCTGCTTTCTTAGTTGCTGAAAAGGTTGTTGTGTCTA 775
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 726 GACAGTTTGGTGTTGGGTTTTACTCTGCTTTCTTAGTTGCTGAGAAGGTTGTTGTGTCCA 785
Query 776 CCAAAAGCCCCAAGTCTGACAAGCAATATGTTTGGGAATCGGTTGCCGATAGTAGCTCGT 835
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 CCAAAAGCCCCAAATCTGACAAGCAATATGTTTGGGAATCGGTTGCCGATAGTAGCTCGT 845
Query 836 ACCTGATCAGAGAAGAAACAGACCCTGAAAACATTCTACGCCGTGGAACACAAATCACCT 895
| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 846 ATCTGATCAGAGAAGAAACAGACCCTGATAACATTCTACGTCGTGGAACACAAATCACCT 905
Query 896 TGTATCTGAGGGAGGATGATAAATATGAATTTGCGGAGTCTACGAGGATCAAGAACCTTG 955
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 906 TGTATCTGAGGGAGGATGATAAATACGAATTTGCGGAGTCTACAAGGATCAAGAACCTCG 965
Query 956 TGAAGAATTACTCTCAGTTCGTTGGGTTTCCTATCTATACATGGCAGGAGAAATCAAGGA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TGAAGAATTACTCTCAGTTCGTTGGGTTTCCTATCTATACATGGCAGGAGAAATCAAGGA 1025
Query 1016 CTATAGAGGTTGAAGAGGAAGAACCAGCTAAGGAAGGAGAAGAGGGTGAGCCAAAGAAAA 1075
|||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1026 CTATAGAGGTCGAAGAGGACGAACCAGTTAAGGAAGGAGAAGAGGGTGAGCCAAAGAAAA 1085
Query 1076 AGAAGACCACTAAAACTGAGAAGTATTGGGATTGGGAACTAGCCAATGAGACAAAACCGC 1135
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1086 AGAAGACCACTAAAACTGAGAAGTATTGGGATTGGGAACTAGCCAACGAGACCAAACCGC 1145
Query 1136 TATGGATGCGCAATTCGAAGGAAGTGGAAAAAGGAGAGTACAATGAGTTCTACAAAAAGG 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TATGGATGCGCAATTCGAAGGAAGTGGAAAAAGGAGAGTACAATGAGTTCTACAAAAAGG 1205
Query 1196 CTTTCAATGAGTTCTTGGATCCACTTGCTCACACACACTTCACAACTGAGGGTGAGGTTG 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 CTTTCAATGAGTTCTTGGATCCACTTGCTCACACACACTTCACAACTGAGGGTGAGGTTG 1265
Query 1256 AGTTCAGGAGTATTTTGTACATCCCTGGGATGGGTCCTCTTAACAATGAGGATGTTACAA 1315
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1266 AGTTCAGGAGCATTTTGTACATCCCTGGGATGGGTCCTCTTAACAATGAAGATGTTACAA 1325
Query 1316 ACCCGAAAACAAAGAACATTCGTCTCTACGTGAAGCGTGTGTTTATCTCTGACGATTTTG 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 ACCCGAAAACAAAGAACATTCGTCTCTACGTGAAGCGTGTGTTTATCTCTGACGATTTTG 1385
Query 1376 ATGGAGAGCTTTTCCCGAGATATTTGAGCTTTGTGAAGGGAGTAGTGGACTCTGATGATC 1435
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1386 ATGGAGAGCTTTTCCCGAGATATCTGAGCTTTGTGAAGGGAGTTGTGGACTCTGATGATC 1445
Query 1436 TTCCTCTTAATGTTTCCCGTGAAATTCTCCAAGAAAGCAGAATTGTAAGAATCATGAGAA 1495
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 TTCCTCTTAATGTTTCTCGTGAAATTCTCCAAGAAAGCAGAATTGTAAGAATCATGAGAA 1505
Query 1496 AGAGGCTCATAAGGAAAACCTTTGACATGATACAAGAAATCTCTGAAAGTGAAAACAAAG 1555
|||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1506 AGAGGCTCATTAGAAAAACCTTTGACATGATACAAGAAATCTCTGAGAGTGAAAACAAAG 1565
Query 1556 AGGATTACAAGAAATTCTGGGAGAACTTTGGTAGGTTCCTTAAATTGGGTTGTATTGAAG 1615
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1566 AGGATTACAAGAAATTCTGGGAGAACTTTGGTAGATTCCTTAAATTGGGTTGTATTGAAG 1625
Query 1616 ACACCGGTAACCACAAGCGTATTACACCGCTACTCAGATTCTACAGTTCCAAGAATGAAG 1675
|||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||
Sbjct 1626 ACACCGGTAACCACAAGCGTATCACACCGCTACTTAGATTCTTCAGTTCCAAGAATGAAG 1685
Query 1676 AAGAATTGACAAGCTTGGATGATTATATCGAGAACATGGGAGAGAACCAAAAGGCGATCT 1735
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1686 AGGAATTGACAAGCTTGGATGATTATATCGAGAACATGGGAGAGAACCAAAAGGCGATCT 1745
Query 1736 ACTACCTTGCCACTGATAGTCTTAAAAGTGCCAAGTCTGCCCCTTTCTTGGAGAAATTAA 1795
||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1746 ACTACCTCGCAACTGATAGTCTTAAAAGTGCCAAGTCTGCCCCTTTCTTGGAGAAACTAA 1805
Query 1796 TCCAAAAAGATATCGAGGTTCTATACTTGGTTGAACCAATCGATGAAGTTGCGATTCAGA 1855
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1806 TCCAAAAAGATATCGAGGTTCTATATTTGGTTGAACCAATCGATGAAGTTGCTATTCAGA 1865
Query 1856 ATTTGCAAACCTACAAAGAAAAGAAATTCGTTGATATCAGCAAAGAAGATTTGGAACTCG 1915
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1866 ATTTGCAAACCTACAAAGAAAAGAAATTCGTTGATATCAGTAAAGAAGATTTGGAACTCG 1925
Query 1916 GAGATGAAGATGAAGTAAAGGACAGGGAAGCTAAACAAGAGTTTAACCTTCTCTGTGACT 1975
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1926 GAGATGAAGATGAAGTAAAGGACAGGGAAGCGAAACAAGAGTTTAACCTTCTCTGTGACT 1985
Query 1976 GGATAAAACAGCAGCTCGGTGACAAAGTTGCAAAAGTCCAAGTCTCAAATCGTTTGAGCT 2035
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1986 GGATAAAACAGCAGCTCGGTGACAAAGTTGCAAAAGTCCAAGTCTCAAACCGTTTGAGCT 2045
Query 2036 CTTCTCCTTGTGTGCTTGTTTCAGGCAAATTCGGGTGGTCAGCTAATATGGAAAGGCTAA 2095
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2046 CTTCTCCTTGTGTGCTTGTCTCTGGCAAATTCGGGTGGTCAGCTAATATGGAAAGGCTAA 2105
Query 2096 TGAAGGCACAGGCTCTTGGAGACACTTCAAGCCTGGAGTTCATGAGAGGTAGGAGAATAC 2155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2106 TGAAGGCACAGGCTCTTGGAGACACTTCAAGCCTGGAGTTCATGAGAGGTAGGAGAATAC 2165
Query 2156 TAGAGATCAATCCAGATCATCCCATCATCAAAGACTTGAACGCTGCTTGCAAGAATGCAC 2215
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2166 TAGAGATCAATCCAGATCATCCCATCATCAAAGACTTGAACGCTGCTTGTAAGAATGCAC 2225
Query 2216 CAGAGAGCACTGAAGCAACAAGAGTGGTCGATCTCTTGTATGACACTGCTATAATCTCAA 2275
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2226 CAGAGAGCACTGAAGCAACAAGAGTGGTCGATCTCTTGTATGACACTGCTATAATATCAA 2285
Query 2276 GTGGATTCACTCCTGATAGCCCGGCCGAGCTCGGGAACAAGATTTATGAGATGATGGCAA 2335
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2286 GTGGATTCACTCCTGATAGCCCGGCCGAGCTCGGGAACAAGATATATGAGATGATGGCAA 2345
Query 2336 TGGCGGTTGGAGGAAGATGGGGCAGAGTTGAAGAAGAAGAAGAAAGCTCGACTGTGAATG 2395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2346 TGGCGGTTGGAGGAAGATGGGGCAGAGTTGAAGAAGAAGAAGAAAGCTCGACTGTGAATG 2405
Query 2396 AAGGAGATGACAAAAGTGGAGAAACAGAGGTAGTTGAACCATCTGAAGTTAGGGCAGAGA 2455
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2406 AAGGAGATGACAAAAGCGGAGAAACAGAGGTAGTTGAACCATCTGAAGTGAGGGCAGAGA 2465
Query 2456 GTGATCCTTGGCAAGATTGATCCTTTTTTACCTTCTTTTGTTTCCAGTGAAttttttt-G 2514
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 2466 GTGATCCTTGGCAAGATTGATCCTTTTTTACCTTCTTTTGTTTGCAGTGATTTTTTTTTG 2525
Query 2515 ACACAAAACGCTTTATCTTCTTCATTAGCAGTATCATGGGCCTAACCGCCTAAGGAAAGC 2574
||| || ||||||||||| | ||||||||||||||||||||||| | | |||||
Sbjct 2526 ACAGAA--CGCTTTATCTT-TCCATTAGCAGTATCATGGGCCTAA-----T--G-AAAGC 2574
Query 2575 CCATAATTAAATCA----TGAACGAGATTTATCCAATA---T-TT-GTAGTTTGTTTTTG 2625
|||||||||||||| |||||||||||||||||||| | || ||||||| ||||||
Sbjct 2575 CCATAATTAAATCACGCGTGAACGAGATTTATCCAATACAGTATTTGTAGTTTTTTTTTG 2634
Query 2626 GATAATTAAAATAATTTTAGAGAAATTACACaaaaaaaG 2664
||||||||||||||||||||||| ||||||||||||||
Sbjct 2635 -ATAATTAAAATAATTTTAGAGAATTTACACAAAAAAAG 2672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132290228691
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5