BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484307
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04032.1 | Symbols: ZIP7 | zinc transporter 7 precursor | ch... 1827 0.0
AT2G03900.1 | Symbols: | pseudogene, similar to iron-regulated... 523 1e-147
> AT2G04032.1 | Symbols: ZIP7 | zinc transporter 7 precursor |
chr2:1289832-1291383 FORWARD LENGTH=1342
Length=1342
Score = 1827 bits (989), Expect = 0.0
Identities = 1230/1342 (92%), Gaps = 33/1342 (2%)
Strand=Plus/Plus
Query 1 AAGTTTTC-TTTTTTGTGTTACAATCTTTATAAATTTGAGACGAAATTATTTTCTCCTAT 59
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAG-TTTCATTTTTTGTGTTACAATCTTTATAAATTTGAGACGAAATTATTTTCTCCTAT 59
Query 60 AGTCTTCATTGC------AAA-A-TT-------CTTTC----CACTTTCTGCAATGGCTT 100
||||||||| || ||| | || ||||| |||||||| |||||||||
Sbjct 60 AGTCTTCATCGCAAAAATAAACAGTTAAGAAAGCTTTCTTTTCACTTTCTCCAATGGCTT 119
Query 101 CTTCTAAAGCTTGTTATAAACTCATAACCATTACAGTTCTCCTTCTATCCTTCACATTTA 160
||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||| |||
Sbjct 120 ATTCTAAAGCATGTTATAAACTCACCACCATTACAATTCTTCTTCTATCCTTCACA-TTA 178
Query 161 -CCTCTCTTGCCGGTAACGCTGAAAACGCAGATGTTAGTGAATGCAAAGCTGAATCTGGA 219
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 CCCTCTCTTGCCGGTAACGCTGAAAACGCAGATGTAAGTGAATGCAAAGCTGAATCTGGA 238
Query 220 GATCCATTATGTCACAACAACAAAGAAGCGCAAAAGCTTAAAATCATAGCAATCCCATCG 279
|||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 239 GATCTATCATGTCACAACAACAAAGAAGCACAAAAGCTTAAAATCATTGCAATCCCATCT 298
Query 280 ATCTTAGTGGCGAGCATGATCGGTGTTTCTTTACCGTTGTTAACTCGTTCCATTCCTGCT 339
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 299 ATCTTAGTGGCGAGCATGATCGGTGTTTCTTTACCGTTGTTTTCTCGTTCCATTCCTGCT 358
Query 340 TTAGGACCCGACCGAGATATGTTTGTGCTCGTTAAGTGTTTAGCTTCGGGTGTAATTTTG 399
||||||||||| ||||| |||| |||| |||||||| ||||||||||||||||||| ||
Sbjct 359 TTAGGACCCGATCGAGAAATGTCTGTGATCGTTAAGACTTTAGCTTCGGGTGTAATTCTG 418
Query 400 GCAACCGGTTTTATGCATGTATTACCGGACTCTGTGGATGATCTCACATCCAAATGTTTG 459
|||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct 419 GCAACCGGTTTTATGCATGTGTTACCGGACTCTTTCGATGATCTCACATCCAAATGTTTG 478
Query 460 CCTGAAGATCCGTGG-AGGAAGTTTCCTTTCAG-CACTTTCATCGCCATGGTCTCGGCTT 517
|||||||| |||||| | ||||||||||||| | |||||||||| | ||| |||||||||
Sbjct 479 CCTGAAGACCCGTGGCA-GAAGTTTCCTTTC-GCCACTTTCATCACGATGATCTCGGCTT 536
Query 518 TGATCGTTTTAATGATTGATTCATTTGCGATGAGTGCGTATGCGAGGAGAACTAGTAAGC 577
|| |||||||||||||||| || ||||||||| |||||||||||||||||||||||||||
Sbjct 537 TGCTCGTTTTAATGATTGAATCGTTTGCGATGTGTGCGTATGCGAGGAGAACTAGTAAGC 596
Query 578 GTGAAGGAGAAGTCGTACCGTTAGAAAATGGATCTAATTCTGTGGATACACAAGATGAGA 637
||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 597 GTGAAGGAGAAGTCGTACCGTTAGAAAATGGATCTAATTCTGTGGATACACAAAACGACA 656
Query 638 TCCAAACCCTAGAAAATGGATCTAATTCTGTGGATAAACAAGAAAAGGTCAACGATA-AT 696
|||||||||||||||||||||||| || |||||| |||||||||||||||||||| | ||
Sbjct 657 TCCAAACCCTAGAAAATGGATCTAGTTATGTGGAGAAACAAGAAAAGGTCAACGA-AGAT 715
Query 697 AAGACAAGTCAACTTCTTAGGAATAAAGTCATTGCTCAGATATTGGAACTAGGTATCGTA 756
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AAGACAAGTGAACTTCTTAGGAATAAAGTCATTGCTCAGATATTGGAACTAGGTATCGTA 775
Query 757 GTTCACTCGGTTGTGATCGGTCTTGCTATGGGGGCTTCAGATAACCAATGTACCATACGA 816
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||| |
Sbjct 776 GTTCACTCGGTTGTGATCGGTCTTGCTATGGGGGCTTCTGATAACAAATGTACCGTACAA 835
Query 817 TCACTTATCGCAGCGCTTTGTTTCCATCAACTTTTTGAAGGAATGGGACTCGGTGGTTCC 876
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 836 TCACTCATCGCAGCGCTTTGTTTCCATCAACTCTTTGAAGGAATGGGACTCGGTGGTTCC 895
Query 877 ATTTTACAAGCACAATTTAAAAGCAAAACGAATTGGATGATGGTGTTTTTCTTTTCGGTC 936
|| |||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 896 ATCTTACAAGCGCAATTTAAAAGCAAAACAAATTGGACAATGGTGTTTTTCTTTTCGGTC 955
Query 937 ACAACACCATTTGGGATTGTTTTAGGGATGGCCATACAAAAGATATATGATGAGACAAGT 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ACAACACCATTTGGGATTGTTTTAGGGATGGCCATACAAAAGATATATGATGAGACAAGT 1015
Query 997 CCGACCGCGTTGATAGTGGTGGGGGTCTTGAATGCGTGCTCTGCAGGATTATTGATTTAT 1056
|| || |||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1016 CCAACTGCGTTGATCGTTGTGGGGGTCTTGAATGCGTGCTCTGCAGGATTGTTGATTTAT 1075
Query 1057 ATGGCACTTGTTAATCTCTTGGCTCATGAATTCTTCGGACCAAAGATACAAGGGAACATG 1116
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1076 ATGGCCCTTGTTAATCTCTTGGCTCATGAATTCTTCGGACCAAAGATACAAGGGAATATT 1135
Query 1117 AAGCTTCATATCCTCGGTTATGTTGCTGTCTTTATAGGTGCTGGAGCAATGACTTTGATG 1176
|| |||||| ||||||||||||||||| ||| | |||||| | || |||| ||||||||
Sbjct 1136 AAACTTCATGTCCTCGGTTATGTTGCTACCTTCACAGGTGCCGCAGGAATGTCTTTGATG 1195
Query 1177 GCCAAGTGGGCATAGAAGTCTTGAGTTAGACTCATCTTTTACTTCTATCATTCACTTTGA 1236
|| |||||||||||||| ||||||||||||||||||||| |||||| || ||||||||||
Sbjct 1196 GCTAAGTGGGCATAGAACTCTTGAGTTAGACTCATCTTT-ACTTCTGTCCTTCACTTTGA 1254
Query 1237 TTTTCGATTATTGGTAGAACAAATTCTTGTA-TGATTTTGGTTTGCACAATTGCTTTTTA 1295
|||||||| ||||||| || ||| ||||||| | |||||| ||||||||||||||||| |
Sbjct 1255 TTTTCGATCATTGGTACAATAAAATCTTGTACT-ATTTTGTTTTGCACAATTGCTTTT-A 1312
Query 1296 TTTGTGGAATGAAGTTTGAATT 1317
||||||||||||||||||||||
Sbjct 1313 TTTGTGGAATGAAGTTTGAATT 1334
> AT2G03900.1 | Symbols: | pseudogene, similar to iron-regulated
transporter 2, blastp match of 57% identity and 4.0e-59 P-value
to GP|9716482|gb|AAF97510.1|AF246266_2|AF246266 iron-regulated
transporter 2 {Lycopersicon esculentum} | chr2:1191786-1192996
REVERSE LENGTH=1211
Length=1211
Score = 523 bits (283), Expect = 1e-147
Identities = 394/446 (88%), Gaps = 14/446 (3%)
Strand=Plus/Plus
Query 94 ATGGCTTCTTCTAAAGCTTGTTATAAACTCAT-A--ACCATTACAGTTCTCCTTCTATCC 150
||||||| |||||||||||||||||||||||| | ||||||||| | |||||||||| |
Sbjct 1 ATGGCTTATTCTAAAGCTTGTTATAAACTCATCACCACCATTACAATCCTCCTTCTATAC 60
Query 151 TTCACATTTACCTCTCTTGCCGGTAACGCTGAAAACGCAGATGTTAGTGAATGCAAAGCT 210
||||||||| ||||||||||| | |||||| |||||| |||||||||| ||||
Sbjct 61 TTCACATTTGCCTCTCTTGCC----A-----AAAACGTAGATGTAAGTGAATGCAGAGCT 111
Query 211 GAATCTGGAGATCCATTATGTCACAACAACAAAGAAGCGCAAAAGCTTAAAATCATAGCA 270
|||||||||||||||| ||||||||||||||||||||| ||||||||||||| || |||
Sbjct 112 GAATCTGGAGATCCATCATGTCACAACAACAAAGAAGCTAAAAAGCTTAAAATGATTGCA 171
Query 271 ATCCCATCGATCTTAGTGGCGAGCATGATCGGTGTTTCTTTACCGTTG-TTAACTCGTTC 329
|||||||| |||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 172 ATCCCATCTATCTTAGTGGCGAGCATGATCGGTGTTTCTTTACAGTTCCTTT-CTCGTTA 230
Query 330 CATTCCTGCTTTAGGACCCGACCGAGATATGTTTGTGCTCGTTAAGTGTTTAGCTTCGGG 389
|||||||||||||||||||||||||| ||| |||| | || | ||| |||| |||||||
Sbjct 231 CATTCCTGCTTTAGGACCCGACCGAGTTATATTTGGGATCATAAAGACTTTAACTTCGGG 290
Query 390 TGTAATTTTGGCAACCGGTTTTATGCATGTATTACCGGACTCTGTGGATGATCTCACATC 449
||||||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||
Sbjct 291 TGTAATTTTGGCAACCGCTTTTATGCATGTGTTACCGGACTCTTTCGATGATCTCACATC 350
Query 450 CAAATGTTTGCCTGAAGATCCGTGGAGGAAGTTTCCTTTCAGCACTTTCATCGCCATGGT 509
|||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||
Sbjct 351 CAAATGTTTGCCTGAAGACCCGTGGAGGAAGTTTCCTTTCACCACTTTCATCGCGATGAA 410
Query 510 CTCGGCTTTGATCGTTTTAATGATTG 535
||||||||| |||||||||||||||
Sbjct 411 CTCGGCTTTTCTCGTTTTAATGATTG 436
Score = 148 bits (80), Expect = 1e-34
Identities = 94/101 (93%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 784 ATGGGGGCTTCAGATAACCAATGTACCATACGATCACTTATCGCAGCGCTTTGTTTCCAT 843
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 745 ATGGGGGCTTCAGATAACCAATGTACCATACGATCACTTATCGCAGCGTTTTGTTTCCAT 804
Query 844 CAACTTTTTGAAGGAATGGGACTCGGTGGTTCCATTTTACA 884
|||| |||||||||| ||||||||||| ||||||||||
Sbjct 805 GAACTCGCTGAAGGAATGAGACTCGGTGGTCCCATTTTACA 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5