BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484308
Length=498
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04038.1 | Symbols: AtbZIP48, bZIP48 | basic leucine-zipper ... 778 0.0
> AT2G04038.1 | Symbols: AtbZIP48, bZIP48 | basic leucine-zipper
48 | chr2:1331919-1332419 FORWARD LENGTH=501
Length=501
Score = 778 bits (421), Expect = 0.0
Identities = 476/502 (95%), Gaps = 5/502 (1%)
Strand=Plus/Plus
Query 1 ATGATTTCGGCGGAAATCACCGGATATTTCCAATATCTACCACCGGAATACCACATAATA 60
|||||| |||| ||||||| ||||||||||||||||||| ||||||||||| || |||||
Sbjct 1 ATGATTCCGGCAGAAATCAACGGATATTTCCAATATCTATCACCGGAATACAACGTAATA 60
Query 61 AACATGCCTTCATCTCCAACCTCTTCCTTAAACTACCTAAACGATTTGATCAT---CAAC 117
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 AACATGCCTTCATCTCCAACCTCTTCCTTAAACTACCTAAACGATTTGATCATCAACAAC 120
Query 118 AACAACTATTCCTCATCATCCAACAGTCAAGATCTCATGATGAGCAACAACTCAACTTCC 177
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 AACAACTATTCCTCATCATCCAACAGTCAAGATCTCATGATAAGCAACAACTCAACTTCC 180
Query 178 GACGAAGATCATCATCAAAGCATCGTAATACTCGACGAGAGGAAACAAAGAAGGATGCTT 237
|||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||
Sbjct 181 GACGAAGATCATCATCAAAGCATCATGGTACTCGACGAGAGGAAACAGAGAAGGATGCTT 240
Query 238 TCAAACAGAGAATCTGCAAGGAGGTCGAGGATGAGGAAACAGAGACATCTTGACGAACTT 297
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 241 TCGAACAGAGAATCTGCAAGGAGGTCAAGGATGAGGAAACAGAGACATCTTGATGAAC-T 299
Query 298 CAGG-CTCAGGTAATAAGGCTTCGTAACGAGAACAACTGTCTTATCGATAAGCTGAACCA 356
| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 CTGGTCTCAGGTAATAAGGCTTCGCAACGAGAACAACTGTCTTATCGATAAGCTGAACCG 359
Query 357 AGTATCTGAGACTCAAGATAGTGTATTGAAGGAGAACTCTAAACTCAAAGAAGAAGCTTC 416
||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGTATCGGAGACTCAAAATTGTGTATTGAAGGAGAACTCTAAACTCAAAGAAGAAGCTTC 419
Query 417 TGATCTCCGACAGCTTGTTTGTGAACTGAAATCTAACAAGAACAACAACAATAGTTTTCC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGATCTCCGACAGCTTGTTTGTGAACTGAAATCTAACAAGAACAACAACAATAGTTTTCC 479
Query 477 AAGAGAGTTTGAAGATAATTAG 498
||||||||||||||||||||||
Sbjct 480 AAGAGAGTTTGAAGATAATTAG 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23760751531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5