BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484309
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25540.1 | Symbols: LAG1 | TRAM, LAG1 and CLN8 (TLC) lipid-s... 1245 0.0
> AT3G25540.1 | Symbols: LAG1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
domain containing protein | chr3:9274335-9276685 FORWARD
LENGTH=1682
Length=1682
Score = 1245 bits (674), Expect = 0.0
Identities = 936/1050 (89%), Gaps = 68/1050 (6%)
Strand=Plus/Plus
Query 473 TGTATTTACTATCTATCAGCTGAGCTACTTGCTTTATCTGTGACTTATAATGAACCTTGG 532
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 578 TGTATTTACTATCTATCAGCTGAGCTACTTGCTTTATCTGTCACATATAATGAACCTTGG 637
Query 533 TTTTCAAATACTCTCTACTTTTGGATT-G---T-AAGA-C---tttttcat--tttttC- 580
||||||||||||||||||||||||||| | | ||| | ||| | | | |
Sbjct 638 TTTTCAAATACTCTCTACTTTTGGATTGGTCCTGGAGATCAGATTTGGCCTGATCAACCA 697
Query 581 GTCG-TTATGAAGTTGAAGTTTTTATATATGTTTGCTGCTGGATTCTACACGTACTCTAT 639
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 AT-GAAGATGAAGTTGAAGTTTTTATATATGTTTGCTGCTGGATTCTACACGTACTCTAT 756
Query 640 ATTCGCGTTGGTGTTTTGGGAAACAAGACGGTCTGATTTCGGAGTTTCGATGGGTCATCA 699
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 757 ATTCGCGTTGGTGTTTTGGGAAACAAGACGGTCTGATTTCGGAGTTTCCATGGGTCATCA 816
Query 700 TATCACAACTCTTGTTCTCATTGTCCTCTCCTATATCTGCAGATTAACTCGTGCTGGTTC 759
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 TATCACAACGCTTGTTCTCATTGTCCTCTCCTATATCTGCAGATTAACTCGTGCTGGTTC 876
Query 760 TGTTATTCTTGCACTTCATGATGCGAGCGATGTGTTCCTTGAAATTGGGAAAATGTCGAA 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 877 TGTTATTCTTGCACTTCATGATGCGAGCGATGTGTTCCTTGAAATTGGGAAAATGTCTAA 936
Query 820 GTATTGCGGAGCTGAAAGTCTCGCGAGCATTTCGTTTGTTCTTTTCGCTTTGTCTTGGGT 879
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 937 ATATTGCGGAGCGGAAAGTCTCGCGAGCATTTCGTTTGTTCTTTTCGCGCTGTCTTGGGT 996
Query 880 CGTTCTACGTCTCATTTACTATCCTTTTTGGATCCTGTGGAGCACAAGCTATCAAATTAT 939
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 997 CGTTCTACGTCTCATTTACTATCCTTTTTGGATCCTGTGGAGCACGAGCTATCAAATCAT 1056
Query 940 TATGACTGTGGACAAAGAAAAGCATCCTAATGGGCCGATCTTGTACTATATGTTCAACAC 999
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1057 TATGACTGTGGACAAAGAAAAGCATCCTAATGGACCAATCTTGTACTATATGTTCAACAC 1116
Query 1000 ACTACTGTATTTTTTGCTTGTTCTTCATATATTCTGGTGGGTTTTGATTTACCGGATGCT 1059
||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1117 ACTTTTGTATTTCTTGCTTGTTCTTCACATATTCTGGTGGGTTTTGATTTACCGGATGCT 1176
Query 1060 TGTGAAACAAGTGCAAGATCGAGGCAAGCTTAGCGAAGATGTTAGATCCGATTCTGAAAG 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TGTGAAACAAGTGCAAGATCGAGGCAAGCTTAGCGAAGATGTTAGATCCGATTCTGAAAG 1236
Query 1120 CGATGATGAACACGAGGATTGATTGCA-GATTCGGAATATTAGT-GCCTGCGC--GTTGT 1175
|||||||||||||||||||| || ||| | || ||||||||||| | ||| | | | |
Sbjct 1237 CGATGATGAACACGAGGATTAATCGCATG-TTGGGAATATTAGTAG--TGCACACGCTCT 1293
Query 1176 TTTATCTCATGAACCTGAACCACACGGAGACTTTAG-A-TTTCAACATGAAGCAGGATTC 1233
| |||||||||| |||||||||||||||||| || | ||||||||| ||| ||||| |
Sbjct 1294 AT-ATCTCATGAATCTGAACCACACGGAGACT--AGGAATTTCAACATCAAGTAGGATGC 1350
Query 1234 ATTGCAGTATTTTAACAGTTGGTTCATCATCTTCCAGAGGAT--T----G--T-AA-CCG 1283
|||||||||||| ||||||||||||||||||||||||||||| | | | || |||
Sbjct 1351 ATTGCAGTATTTGAACAGTTGGTTCATCATCTTCCAGAGGATCGTAACCGGATCAAACCG 1410
Query 1284 ----GAATGAATCGGTTTCTCAATCTGAATTTTTGA-TTT--------CTCTAAAAGTTT 1330
|||||||||||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 1411 TTTTGAATGAATCGGTTTCTCAATCTGAATTTTTGAGTTTATTGTTTTCTCTAAA-GTTT 1469
Query 1331 GAGCAAATTCAAGATTTTGCTCAAACTGCTACACTTTTTATT-TATTTTTCTTCTTCAGT 1389
||||||||||||||||||| |||||||||| ||| || |||| | |||||||||| | |
Sbjct 1470 GAGCAAATTCAAGATTTTGATCAAACTGCTCCACGTTCTATTGT-TTTTTCTTCT--A-T 1525
Query 1390 TTGAATTGGTTGGGACTACATTTATGCTTTTGCAATAACACAATTCCTTGTATCATTAAA 1449
|||| || || ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1526 ---AATT--TT-----TA-ATTTACGCTTTTGCAATAACACAATTCCTTGTATCATTATA 1574
Query 1450 AACTAATGTCATCTCAAAATTAGCTCCCTT 1479
||||||||||||||||||||||||||||
Sbjct 1575 --CTAATGTCATCTCAAAATTAGCTCCCTT 1602
Score = 531 bits (287), Expect = 1e-149
Identities = 327/345 (95%), Gaps = 8/345 (2%)
Strand=Plus/Plus
Query 1 ACATACATTCTCGATTAAATTATGATCCGATCAAGAACTC---ATTATTGTAACAGATAA 57
|||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||
Sbjct 124 ACATACATTCTCGAATAAATTCTGATCCGATCAAGAACTCATAATTATTGTAACAGATAA 183
Query 58 AGTCAAATTTGTGAGATCCACTACTAAATCTAACTTAAAGCATTGAACttttttttCTTT 117
| ||||||||| |||||| |||||||||||||||||||||||||| || ||| | |||
Sbjct 184 AATCAAATTTGAGAGATCTACTACTAAATCTAACTTAAAGCATTGTAC---TTTCT-TTT 239
Query 118 ATCTCA-TCTCCTTTGCTCTGCTTTCTTCTGGTCAACCCCCACGAGATTCCTTCTTATGT 176
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATCTCATTCTCCTTTGCTCTGCTTTCTTCTGGTCAACCCCCACGAGATTCCTTCTTATGT 299
Query 177 GATTGTAAAGAGAAGATTTTTCAGAGATGGGTCTCTTCGAATCGGTGAAATCAATCGATT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GATTGTAAAGAGAAGATTTTTCAGAGATGGGTCTCTTCGAATCGGTGAAATCAATCGATT 359
Query 237 GGGAACAAGAATCGTTCCCAACTTATCAGGATTTAGGGTTTTTGCCTCTCTTTGCAGTGT 296
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 360 GGGAACAAGAATCGTTCCCAACTTATCAAGATTTAGGGTTTTTGCCTCTCTTTGCAGTGT 419
Query 297 TCTTTCCTACAATTCGATTTCTACTTGATAGATTCGTCTTCGAGA 341
|||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 420 TCTTCCCTACAATTCGATTTCTACTTGACAGATTCGTCTTCGAGA 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72941391885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5