BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484310
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25545.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1485 0.0
> AT3G25545.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages; Has
38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9276845-9278629
FORWARD LENGTH=1147
Length=1147
Score = 1485 bits (804), Expect = 0.0
Identities = 993/1076 (92%), Gaps = 46/1076 (4%)
Strand=Plus/Plus
Query 1 GGTTTTAGATTTATCGCTGTCTTGGACGAGAAGACTGAAACCAATTGCAAC--aaa-aaa 57
|||||||| ||| |||||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct 3 GGTTTTAGCTTTCTCGCTGTCTTGGCCGAGAAGACTGAAACCAATTGCAACAAAAAGAAA 62
Query 58 g----aaaaaaGC------TCTCTTCTTTG-T--TCATCATCGATCGATTCTTCTGCAAA 104
| |||||| | ||||||||||| | |||||||||||||||||| ||||||
Sbjct 63 GATAAAAAAAAACAAAAAATCTCTTCTTTGTTCATCATCATCGATCGATTCTACTGCAAC 122
Query 105 AAGGTTTGTGAGATTTCGATAAAAGCTAAGAAATGGAAGATGTACTTACCGAGAATCCTC 164
||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 123 AAGGTCTGTGAGATTTTGATAAAAGCTAAGATATGGAAGATGTACTTACCGAGAATCCTC 182
Query 165 CACCTTCAAGATTCTTCCAAGAAGATCTTAACAACTTTGTTCCGCCACCTGAATCCCTTC 224
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 183 CACCTTCAAGATTCTTCCAAGAAGATCTTAACAACTTTGTTCAGCCACCTGAATCCCTTC 242
Query 225 CATCTCCTTTCATCATATTCTCAAATCCGAAACCCGAACTTCCTCTCCGACCATCTCTAC 284
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 243 CATCTCCTTTCATCATATTCTCAAACCCGAAACCTGAACTTCCTCTCCGACCATCTCTAC 302
Query 285 TCATCATAGCCATATCTTCACCTTCCCTCTATATTTTCCATAATTTACCTTCAAAGACTC 344
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 303 TTATCATAGCCATATCTTCACCTTCCCTCTATATTTTCCATAGTTTACCTTCAAAGACTC 362
Query 345 TCCTTGGAAGTCTCATCATGCCTGAAGTCCCGTTTTCTGGAAACACCATGGAACCTTCGT 404
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 363 TCCTTGGAAGTCTCATCATGCCTGAAGTTCCGTTTTCTGGAAACACCATGGAACCTTCTT 422
Query 405 TAGAAGACAAATCCTGCAACATATATTCCTTGAGTAGTACTGATGACAAAAACTTGATCC 464
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 423 TAGAAGACAAATCCTGCAACATATATTCCTTGAGTAGTGCTGATGATAAAAACTTGACCC 482
Query 465 TCCTCGTCTCTGTTCAGCTTCCTGTATCTCCTGAACGGTCTAACCTAGTCTCGAGATTTC 524
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 483 TCCTCGTCTCTGTTCAGCTTCCTGTATCTCCTGAACGGTCTAACCTAGTCTCGAGATTGC 542
Query 525 TCATTGGCC-AAGACATTATCCCCGAGCGGGTTATAATCTTGGATTCCATTCAGAGCCGT 583
||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 543 TCATT-GCCAAAGACATTATCCCCGAGCGGGTGATAATCTTGGATTCCATTCAGAGCCGT 601
Query 584 AACTTCAGAGGTAGACTCTCACCAGACGAAACATTGGCAGCTAAACTCGAGACATCTGCT 643
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 602 AACTTCAGAGGTAGACTCTCACCAGACGAAACATTGGCAGCCAAACTCGAGACATCTGCT 661
Query 644 GAGAAGAAAGCAATAACTCACACCGGGTTGGTGAATCTGGATTACTTCCCATCAGGGAGT 703
||||||||||||| |||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 662 GAGAAGAAAGCAACAACTCACACCGGTTTAGTGAATCTCGATTACTTCCCATCAGGGAGT 721
Query 704 GTAATCGACGGTCTGAGTGCTTCACTTTTGAGCCGGTGCCAGCTAAAGAACATAAGAGGA 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GTAATCGACGGTCTGAGTGCTTCACTTTTGAGCCGGTGCCAGCTAAAGAACATAAGAGGA 781
Query 764 ACATTGGTGATCACATGGCCTGAGTTTGGTCCTTCTGTTATAAGATTTGTCGGAGCTCTG 823
|||||||||||| |||||||||||||||||||||| || |||||||| | ||||||||||
Sbjct 782 ACATTGGTGATCTCATGGCCTGAGTTTGGTCCTTCAGTGATAAGATTCGCCGGAGCTCTG 841
Query 824 CTGAAGAACATTGTCCCGAGTTTGGATGTCGTGAGTGTGAACAAAGATCTGGAGAAGAAT 883
|||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 842 CTGAAGAAAATTGTCCCGAGTTTGGATGTTGCGAGTGTGAACAAAGATCTGGAGAAGAAT 901
Query 884 TCTTCAAGAACTGGTCTTAAAAAGGATACTTGGCTTGACTCTGATCTATATACATGATTC 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TCTTCAAGAACTGGTCTTAAAAAGGATACTTGGCTTGACTCTGATCTATATACATGATTC 961
Query 944 AGAGACAG--T--TG-----TT-TC--TTGTTTC-T------ATGCTTAGTTGGACAAAA 984
|||||||| | || || || ||||||| | ||||||| | ||| ||||
Sbjct 962 AGAGACAGAGTAATGAAAGCTTCTCACTTGTTTCATGTTTCTATGCTTACTAGGAAAAAA 1021
Query 985 CAGAGACCTT------GCTTGTGTT---CTCATTGCAAAAACAGTTTTGTTTCATT 1031
|||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1022 CAGAGACCTTATTTACGCTTGTGTTGTTCTCATTGCAAAAACAGTTTTGTTTCATT 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5