BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484310 Length=1080 Score E Sequences producing significant alignments: (Bits) Value AT3G25545.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1485 0.0 > AT3G25545.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9276845-9278629 FORWARD LENGTH=1147 Length=1147 Score = 1485 bits (804), Expect = 0.0 Identities = 993/1076 (92%), Gaps = 46/1076 (4%) Strand=Plus/Plus Query 1 GGTTTTAGATTTATCGCTGTCTTGGACGAGAAGACTGAAACCAATTGCAAC--aaa-aaa 57 |||||||| ||| |||||||||||| ||||||||||||||||||||||||| ||| ||| Sbjct 3 GGTTTTAGCTTTCTCGCTGTCTTGGCCGAGAAGACTGAAACCAATTGCAACAAAAAGAAA 62 Query 58 g----aaaaaaGC------TCTCTTCTTTG-T--TCATCATCGATCGATTCTTCTGCAAA 104 | |||||| | ||||||||||| | |||||||||||||||||| |||||| Sbjct 63 GATAAAAAAAAACAAAAAATCTCTTCTTTGTTCATCATCATCGATCGATTCTACTGCAAC 122 Query 105 AAGGTTTGTGAGATTTCGATAAAAGCTAAGAAATGGAAGATGTACTTACCGAGAATCCTC 164 ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 123 AAGGTCTGTGAGATTTTGATAAAAGCTAAGATATGGAAGATGTACTTACCGAGAATCCTC 182 Query 165 CACCTTCAAGATTCTTCCAAGAAGATCTTAACAACTTTGTTCCGCCACCTGAATCCCTTC 224 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 183 CACCTTCAAGATTCTTCCAAGAAGATCTTAACAACTTTGTTCAGCCACCTGAATCCCTTC 242 Query 225 CATCTCCTTTCATCATATTCTCAAATCCGAAACCCGAACTTCCTCTCCGACCATCTCTAC 284 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 243 CATCTCCTTTCATCATATTCTCAAACCCGAAACCTGAACTTCCTCTCCGACCATCTCTAC 302 Query 285 TCATCATAGCCATATCTTCACCTTCCCTCTATATTTTCCATAATTTACCTTCAAAGACTC 344 | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 303 TTATCATAGCCATATCTTCACCTTCCCTCTATATTTTCCATAGTTTACCTTCAAAGACTC 362 Query 345 TCCTTGGAAGTCTCATCATGCCTGAAGTCCCGTTTTCTGGAAACACCATGGAACCTTCGT 404 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 363 TCCTTGGAAGTCTCATCATGCCTGAAGTTCCGTTTTCTGGAAACACCATGGAACCTTCTT 422 Query 405 TAGAAGACAAATCCTGCAACATATATTCCTTGAGTAGTACTGATGACAAAAACTTGATCC 464 |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || Sbjct 423 TAGAAGACAAATCCTGCAACATATATTCCTTGAGTAGTGCTGATGATAAAAACTTGACCC 482 Query 465 TCCTCGTCTCTGTTCAGCTTCCTGTATCTCCTGAACGGTCTAACCTAGTCTCGAGATTTC 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 483 TCCTCGTCTCTGTTCAGCTTCCTGTATCTCCTGAACGGTCTAACCTAGTCTCGAGATTGC 542 Query 525 TCATTGGCC-AAGACATTATCCCCGAGCGGGTTATAATCTTGGATTCCATTCAGAGCCGT 583 ||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 543 TCATT-GCCAAAGACATTATCCCCGAGCGGGTGATAATCTTGGATTCCATTCAGAGCCGT 601 Query 584 AACTTCAGAGGTAGACTCTCACCAGACGAAACATTGGCAGCTAAACTCGAGACATCTGCT 643 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 602 AACTTCAGAGGTAGACTCTCACCAGACGAAACATTGGCAGCCAAACTCGAGACATCTGCT 661 Query 644 GAGAAGAAAGCAATAACTCACACCGGGTTGGTGAATCTGGATTACTTCCCATCAGGGAGT 703 ||||||||||||| |||||||||||| || |||||||| ||||||||||||||||||||| Sbjct 662 GAGAAGAAAGCAACAACTCACACCGGTTTAGTGAATCTCGATTACTTCCCATCAGGGAGT 721 Query 704 GTAATCGACGGTCTGAGTGCTTCACTTTTGAGCCGGTGCCAGCTAAAGAACATAAGAGGA 763 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 GTAATCGACGGTCTGAGTGCTTCACTTTTGAGCCGGTGCCAGCTAAAGAACATAAGAGGA 781 Query 764 ACATTGGTGATCACATGGCCTGAGTTTGGTCCTTCTGTTATAAGATTTGTCGGAGCTCTG 823 |||||||||||| |||||||||||||||||||||| || |||||||| | |||||||||| Sbjct 782 ACATTGGTGATCTCATGGCCTGAGTTTGGTCCTTCAGTGATAAGATTCGCCGGAGCTCTG 841 Query 824 CTGAAGAACATTGTCCCGAGTTTGGATGTCGTGAGTGTGAACAAAGATCTGGAGAAGAAT 883 |||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 842 CTGAAGAAAATTGTCCCGAGTTTGGATGTTGCGAGTGTGAACAAAGATCTGGAGAAGAAT 901 Query 884 TCTTCAAGAACTGGTCTTAAAAAGGATACTTGGCTTGACTCTGATCTATATACATGATTC 943 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 TCTTCAAGAACTGGTCTTAAAAAGGATACTTGGCTTGACTCTGATCTATATACATGATTC 961 Query 944 AGAGACAG--T--TG-----TT-TC--TTGTTTC-T------ATGCTTAGTTGGACAAAA 984 |||||||| | || || || ||||||| | ||||||| | ||| |||| Sbjct 962 AGAGACAGAGTAATGAAAGCTTCTCACTTGTTTCATGTTTCTATGCTTACTAGGAAAAAA 1021 Query 985 CAGAGACCTT------GCTTGTGTT---CTCATTGCAAAAACAGTTTTGTTTCATT 1031 |||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 1022 CAGAGACCTTATTTACGCTTGTGTTGTTCTCATTGCAAAAACAGTTTTGTTTCATT 1077 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52911374430 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5