BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484312
Length=2183
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25560.3 | Symbols: NIK2 | NSP-interacting kinase 2 | chr3:9... 3169 0.0
> AT3G25560.3 | Symbols: NIK2 | NSP-interacting kinase 2 | chr3:9279513-9282860
REVERSE LENGTH=2281
Length=2281
Score = 3169 bits (1716), Expect = 0.0
Identities = 1935/2040 (95%), Gaps = 17/2040 (1%)
Strand=Plus/Plus
Query 1 TTTTTCCTAATAACCTCCAAACAAATACTTGaaaaaaaaaaGAATATTTCTTATACAAAA 60
|||||| ||| |||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct 173 TTTTTCTTAAAAACCTCCAAACAAAGAATCG---AAAAAAAGAATATTTCTTATACAAAA 229
Query 61 GAAATACACCTCAAACTCTGCACCTTAGAGATTATTAATACTCTCAAGAAAAACAAGTTT 120
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 230 GAAATAAACCTCAAACTCTGCACCTTAGAG---ATTAATACTCTCAAGAAAAACAAGTTT 286
Query 121 TGATTTAGACTAAGATGTTGCAAGGAAGAAGAAAAGTAGAAAAGAGTTATGctttgttct 180
||||| ||| ||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 287 TGATTCGGACAAAGATGTTGCAAGGAAGAAGAGAAGCAAAAAAGAGTTATGCTTTGTTCT 346
Query 181 cttcaatc-ttcttctacttcttcatttgtttcctatcttcttcttctGCAGAACTCACA 239
|||||| | ||||||| |||||| || ||||| || ||||||||||||||||||||||||
Sbjct 347 CTTCAA-CTTTCTTCTTCTTCTTTATCTGTTTTCTTTCTTCTTCTTCTGCAGAACTCACA 405
Query 240 GACAAAGGTGTTAACTTTGAAGTTCTTGCCTTAATAGGTATCAAAAGCTCTCTGGTTGAT 299
|||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||
Sbjct 406 GACAAAGGTGTTAACTTTGAAGTTGTTGCCTTAATAGGAATCAAAAGCTCACTGACTGAT 465
Query 300 CCTCATGGAGTTCTACA-GAATTGGGATGACACAGCAGTTGATCCATGTAGCTGGAACAT 358
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CCTCATGGAGTTCTA-ATGAATTGGGATGACACAGCAGTTGATCCATGTAGCTGGAACAT 524
Query 359 GATCACTTGTTCTCCTGATGGTTTTGTCTTAAGCCTAGGAGCTCCAAGCCAGAGCTTGTC 418
||||||||| | | |||||||||||||| |||| |||| |||||||||||| | ||| ||
Sbjct 525 GATCACTTG-T-T-CTGATGGTTTTGTCATAAGGCTAGAAGCTCCAAGCCAAAACTTATC 581
Query 419 AGGAACTCTTTCATCAAGTATTGGTAATTTAACAAATCTTCAAACTGTGTTATTGCAGAA 478
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 582 AGGAACTCTTTCATCAAGTATTGGAAATTTAACAAATCTTCAAACTGTGTTATTGCAGAA 641
Query 479 CAATTACATAACAGGACATATCCCTCATGAGATTGGGAAATTGATGAAACTGAAAACACT 538
|||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct 642 CAATTACATAACAGGAAACATCCCTCATGAGATTGGGAAATTGATGAAACTCAAAACACT 701
Query 539 TGATCTCTCTACCAATAACTTCACTGGTCAAATCCCATTCACTCTTTCTCATTCCACAAA 598
||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 702 TGATCTCTCTACCAATAACTTCACTGGTCAAATCCCATTCACTCTTTCTTACTCCAAAAA 761
Query 599 TCTTCAATACTTGAGGGTTAATAATAACAGCCTGACAGGAACAATTCCTAGCTCATTGGC 658
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 TCTTCAGTACTTGAGGGTTAATAATAACAGCCTGACAGGAACAATTCCTAGCTCATTGGC 821
Query 659 AAACATGACCCAACTCACTTTTTTGGATTTGTCGTACAATAACTTGAGTGGACCAGTTCC 718
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 822 AAACATGACCCAACTCACTTTTTTGGATTTGTCGTATAATAACTTGAGTGGACCAGTTCC 881
Query 719 AAGATCACTTGCCAAAACATTTAGTGTTATGGGAAATCCTCAGATTTGTCCAACAGGCAC 778
||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||||| ||
Sbjct 882 AAGATCACTTGCCAAAACATTCAATGTTATGGGCAATTCTCAGATTTGTCCAACAGGAAC 941
Query 779 AGAGAAAGACTGTAATGGGACTCAGCCTAAGCCAATGTCAATCACCTTGAACAGTTCTCA 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 TGAGAAAGACTGTAATGGGACTCAGCCTAAGCCAATGTCAATCACCTTGAACAGTTCTCA 1001
Query 839 AAATAAATCATCTGATGGAGGAACCAAAAACCGGAAAATCGCGGTAGTCTTTGGTGTAAG 898
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1002 AAATAAATCATCTGATGGAGGAACTAAAAACCGGAAAATCGCGGTAGTCTTCGGTGTAAG 1061
Query 899 CCTT-ACGTGTGTTTGCTTGTTGATCATTGGCTTTGGTTTTCTTCTTTGGTGGAGAAGAA 957
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 -CTTGACATGTGTTTGCTTGTTGATCATTGGCTTTGGTTTTCTTCTTTGGTGGAGAAGAA 1120
Query 958 GACATAACAAACAAGTATTATTCTTTGACATTAATGAGCAAAACAAGGAAGAAATACGTC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1121 GACATAACAAACAAGTATTATTCTTTGACATTAATGAGCAAAACAAGGAAGAAATGTGTC 1180
Query 1018 TTGGGAATCTAAGGAGGTTTAGTTTCAAAGAACTTCAATCCGCAACGAGTAACTTCAGTA 1077
| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
Sbjct 1181 TAGGGAATCTAAGGAGGTTTAATTTCAAAGAACTTCAATCCGCAACTAGTAACTTCAGCA 1240
Query 1078 GCAAGAATCTGGTAGGAAAAGGAGGGTTTGGGAATGTGTATAAAGGTTGTCTTCATGATG 1137
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1241 GCAAGAATCTGGTCGGAAAAGGAGGGTTTGGAAATGTGTATAAAGGTTGTCTTCATGATG 1300
Query 1138 GAAGCATCATTGCGGTGAAAAGATTAAAGGATATAAACAATGGCGGTGGAGAGATTCAGT 1197
|||| ||||| |||||||| ||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1301 GAAGTATCATCGCGGTGAAGAGATTAAAGGATATAAACAATGGTGGTGGAGAGGTTCAGT 1360
Query 1198 TTCAGACGGAGCTTGAAATGATAAGCCTTGCCGTCCACCGGAATCTCCTCCGCCTT-TAC 1256
||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1361 TTCAGACAGAGCTTGAAATGATAAGCCTTGCCGTCCACCGGAATCTCCTCCGC-TTATAC 1419
Query 1257 GGTTTCTGCACTACTTCCTCTGAACGGCTTCTTGTCTATCCTTACATGTCCAATGGCAGT 1316
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1420 GGTTTCTGTACTACTTCCTCTGAACGGCTTCTCGTTTATCCTTACATGTCCAATGGCAGT 1479
Query 1317 GTTGCTTCTCGTCTCAAAGCTAAACCTGTATTGGATTGGGGCACAAGAAAGCGAATAGCA 1376
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1480 GTCGCTTCTCGTCTCAAAGCTAAACCGGTATTGGATTGGGGCACAAGAAAGCGAATAGCA 1539
Query 1377 TTAGGAGCAGGAAGAGGGTTACTGTATTTGCACGAGCAATGTGATCCAAAGATCATTCAC 1436
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1540 TTAGGAGCAGGAAGAGGGTTGCTGTATTTGCATGAGCAATGTGATCCAAAGATCATTCAC 1599
Query 1437 CGTGATGTCAAAGCTGCAAACATACTTCTTGACCATTACTGTGAAGCGGTTGTCGGAGAT 1496
||||||||||||||||| ||||||||||||||| |||||| |||||| ||||||||||||
Sbjct 1600 CGTGATGTCAAAGCTGCGAACATACTTCTTGACGATTACTTTGAAGCTGTTGTCGGAGAT 1659
Query 1497 TTCGGGTTGGCTAAGCTTTTGGATCATGAGGAGTCGCATGTGACAACCGCCGTGAGAGGA 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 TTCGGGTTGGCTAAGCTTTTGGATCATGAGGAGTCGCATGTGACAACCGCCGTGAGAGGA 1719
Query 1557 ACCGTGGGTCACATTGCACCTGAGTATCTCTCAACAGGACAATCTTCGGAGAAGACAGAT 1616
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1720 ACAGTGGGTCACATTGCACCTGAGTATCTCTCAACAGGACAATCTTCTGAGAAGACAGAT 1779
Query 1617 GTGTTCGGTTTTGGGATTCTTCTTCTTGAATTGATTACTGGATTGAGGGCTCTTGAATTT 1676
||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1780 GTGTTCGGTTTCGGGATTCTTCTTCTCGAATTGATTACTGGATTGAGAGCTCTTGAATTC 1839
Query 1677 GGAAAAGCAGCAAACCAAAGAGGAGCGATACTTGATTGGGTGAAGAAACTACAACAAGAG 1736
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1840 GGAAAAGCAGCAAACCAAAGAGGAGCGATACTTGATTGGGTAAAGAAACTACAACAAGAG 1899
Query 1737 AAGAAGCTAGAACAAATAGTAGACAAGGATTTGAAGAGCAACTACGACCGAATAGAAGTG 1796
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1900 AAGAAGCTAGAACAGATAGTAGACAAGGATTTGAAGAGCAACTACGATAGAATAGAAGTG 1959
Query 1797 GAAGAAATGGTTCAAGTGGCTTTGCTATGTACACAGTATCTTCCGATTCACCGTCCTAAG 1856
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1960 GAAGAAATGGTTCAAGTGGCTTTGCTTTGTACACAGTATCTTCCCATTCACCGTCCTAAG 2019
Query 1857 ATGTCTGAAGTTGTGAGAATGCTTGAAGGCGATGGTCTCGTTGAGAAATGGGAAGCTTCT 1916
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2020 ATGTCTGAAGTTGTGAGAATGCTTGAAGGCGATGGTCTTGTTGAGAAATGGGAAGCTTCT 2079
Query 1917 TCTCAGAGAGCAGAAACCAATAGAAGTTACAGTAAACCTAATGAGTTTTCTTCCTCTGAA 1976
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2080 TCTCAGAGAGCAGAAACCAATAGAAGTTACAGTAAACCTAACGAGTTTTCTTCCTCTGAA 2139
Query 1977 CGTTATTCAGATCTCACAGATGATTCCTCTGTGCTGGTTCAAGCCATGGAGTTATCAGGT 2036
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2140 CGTTATTCGGATCTTACAGATGATTCCTCGGTGCTGGTTCAAGCCATGGAGTTATCAGGT 2199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108282575565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5