BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484313 Length=1453 Score E Sequences producing significant alignments: (Bits) Value AT3G25572.1 | Symbols: CPuORF11 | conserved peptide upstream op... 1271 0.0 AT3G25570.1 | Symbols: | Adenosylmethionine decarboxylase fami... 1271 0.0 > AT3G25572.1 | Symbols: CPuORF11 | conserved peptide upstream open reading frame 11 | chr3:9287263-9289338 REVERSE LENGTH=1700 Length=1700 Score = 1271 bits (688), Expect = 0.0 Identities = 825/890 (93%), Gaps = 13/890 (1%) Strand=Plus/Plus Query 1 GAATCCTTTTCTTGACTTAGTTTTGG-TTTTTAATTGCTCTGTCTTTCTTGACAGGTGAA 59 |||||| ||||||||||||||| ||| ||||| ||||||||| ||||| ||||||||| Sbjct 142 GAATCCATTTCTTGACTTAGTTCTGGCTTTTT-ATTGCTCTG---TTCTTCACAGGTGAA 197 Query 60 TGAGAAATGGAGACTAAAGGTGGTAAAAAGAAGTCtagtaatagtagtagtagtagtagt 119 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 198 TGAGAAATGGAGACTAAAGGTGGTAAAAAGAAGTCTAGTAATAGTAGTAGTAG--G--G- 252 Query 120 aACAGTCTTTTCTACGAAGCTCCTCTTGGATACATCATTGAAGACGTTAGACCTAACGGT 179 | ||||||||||| ||||||||||||| | |||| |||||||||||||||||| |||||| Sbjct 253 A-CAGTCTTTTCTTCGAAGCTCCTCTTCGTTACAGCATTGAAGACGTTAGACCAAACGGT 311 Query 180 GGAATCAAGAAATTCAGATCTGCTGCTTACTCAAACATCACTCGCAAACCATCCTGATTT 239 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | Sbjct 312 GGAATCAAGAAATTCAGATCTGCTGCTTACTCAAACATCACTGGAAAACCATCCTGATAT 371 Query 240 TCTTCAATACGTTTTCCTCCTAACCACTTACTAACTGTGGTTGATCAACGTTCGCGATAA 299 || ||||||||||||| || |||||||||||||||||||||||||||| ||||||||||| Sbjct 372 TCCTCAATACGTTTTCTTCTTAACCACTTACTAACTGTGGTTGATCAATGTTCGCGATAA 431 Query 300 ATCTTCGTTCTTTCTTGTTTTGTTCTCCTTCAAAACTCATTTTTTGACGGCCTCTTCGTC 359 ||||||||| ||||||||||||||||| |||||||||||||||| || | ||||||| | Sbjct 432 ATCTTCGTTTTTTCTTGTTTTGTTCTCTTTCAAAACTCATTTTTCGATAGTCTCTTCGCC 491 Query 360 TTTTGGAAAATGGCGGTCTCTGCTATTGGTTTCGAAGGATTTGAGAAAAGGCTCGAAATT 419 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 492 TTTTGAAAAATGGCGGTCTCTGCTACAGGTTTCGAAGGATTTGAGAAAAGGCTCGAAATC 551 Query 420 TCATTCTTTGAGCCTAGTGTCTTTCTTGATCCCAAAGGAAATG-GTCTTCGTGCTCTTAC 478 |||||||||||| ||| || ||||||||||||| ||||||| | |||||||| ||||||| Sbjct 552 TCATTCTTTGAGACTACTGACTTTCTTGATCCCCAAGGAAA-GAGTCTTCGTTCTCTTAC 610 Query 479 TAAATCCCAGTTAGATGAGATCTTGACTCCAGCAGAATGCACAATTGTTTCCTCTCTCTC 538 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 611 CAAATCCCAGTTAGATGAGATCTTGACTCCAGCAGAGTGCACAATTGTTTCCTCTCTCAC 670 Query 539 AAACTCTTTGGTCGACTCTTACGTGCTCTCTGAATCTAGCCTCTTTGTCTATCCTTACAA 598 ||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 671 AAACTCTTTCGTTGACTCTTACGTGCTCTCTGAATCTAGTCTCTTTGTTTATCCTTACAA 730 Query 599 GATCATCATCAAAACATGCGGGACTACGAAGCTTCTCTTTTCGATCCCGCATATCCTTAG 658 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 731 GATCATCATCAAAACATGCGGGACTACTAAGCTTCTCTTGTCGATCCCGCATATCCTTAG 790 Query 659 TCTGGCTGATTCACTTTGCCTTACTGTCAAATCTGTCCGCTACACTCGTGGTAGCTTCAT 718 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || Sbjct 791 GCTGGCTGATTCACTTTGCCTCACTGTCAAATCTGTTCGCTACACTCGTGGTAGCTTTAT 850 Query 719 TTTCCCGGGAGCTCAATCTTACCCTCACCGTAGCTTCTCAGAGGAAGTTGCTTTACTTGA 778 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 851 TTTTCCGGGAGCTCAATCTTACCCTCACCGTAGCTTCTCAGAGGAAGTTGCTTTACTTGA 910 Query 779 TGGCTATTTTGGTAAGCTCAATGCAGGAAGCAAAGCTTTTGTCATGGGAGGGTCAGATAA 838 || ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 911 TGACTATTTTGGTAAGCTCAATGCAGGAAGCAAAGCTTTTGTGATGGGAGGTTCAGATAA 970 Query 839 TAACCCTCAGAGATGGCATGTCTACTCTGCTTCTTCTGCTTATGAATCTG 888 ||||||||||||||||||||| ||||||||||||||| || | ||||||| Sbjct 971 TAACCCTCAGAGATGGCATGTTTACTCTGCTTCTTCTACTGAAGAATCTG 1020 Score = 316 bits (171), Expect = 3e-85 Identities = 236/266 (89%), Gaps = 9/266 (3%) Strand=Plus/Plus Query 1119 GAGTTGGTGGATAGGGTTCTGGTTTGTTTTGAACCAGAAGAATTCTCTGTAGCGGTGCAT 1178 ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| Sbjct 1320 GAGTTGGTGGATAGGGTTCTGGTTTGTTTTGGACCGGAAGAATTTTCTGTAGCGGTGCAT 1379 Query 1179 GCCAATCTTGGAACCGAGCTATTGGCGTGTGATTGTATAGTTGATGTGAAGGGATACTTG 1238 || ||||||||||||||| ||||||||| ||||||| ||| ||||||||| |||||||| Sbjct 1380 GCTAATCTTGGAACCGAGGTATTGGCGTCTGATTGTGTAGCTGATGTGAACGGATACTTT 1439 Query 1239 AGCCAAGAGAGAGGACTAGAGGAGCTTGGACTTGGAGGTTCGGTTGTCTACTAGAAATAT 1298 ||||||||||||| ||||||||||||||||||||||||||||||| | ||| ||| || | Sbjct 1440 AGCCAAGAGAGAGAACTAGAGGAGCTTGGACTTGGAGGTTCGGTTCTATACCAGAGATTT 1499 Query 1299 GTCAA-ATCTGTTGAATGTTGCTCTCCAATATCTACTCTTGGGTTCTGTTGGAAATAGGA 1357 ||||| | |||||||||||||||| |||| |||||||||||||||||||| ||| | | Sbjct 1500 GTCAAGA-CTGTTGAATGTTGCTCACCAAAATCTACTCTTGGGTTCTGTTAGAA---G-A 1554 Query 1358 CGAAGTGGTTAAAGAAGAAGAATGAT 1383 | ||| ||||||||||||| |||| Sbjct 1555 --A-GTGATTAAAGAAGAAGAGTGAT 1577 Score = 315 bits (170), Expect = 1e-84 Identities = 197/210 (94%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 911 AAAAGCTTCGGTGTTCTTTAAAACCAATTCGGTTTCAGCTTCTGAGATGACTATTAGCTC 970 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 1079 AAAAGCTTCGGTGTTCTTTAAAACCAACTCTGTTTCAGCTTCTGAGATGACTATTAGCTC 1138 Query 971 TGGGATTAGAAACATCCTTCCAGCCTCTGAAATCTGTGATTTTAACTTTGATCCTTGCGG 1030 |||||| |||||||||||||||| ||||||||||||||||||||||||||| || ||||| Sbjct 1139 TGGGATCAGAAACATCCTTCCAGGCTCTGAAATCTGTGATTTTAACTTTGAACCGTGCGG 1198 Query 1031 TTACTCGATGAATTC-AGTTGAAGGAGATGCAGTTTCAACCATCCATGTGACTCCGGAAG 1089 ||||||||||||||| | ||||||| ||||| ||||| |||||||||||||| ||||||| Sbjct 1199 TTACTCGATGAATTCGA-TTGAAGGGGATGCGGTTTCTACCATCCATGTGACCCCGGAAG 1257 Query 1090 ACGGTTTTAGCTATGCAAGCTTTGAAACAG 1119 | |||||||||||||||||||||||||||| Sbjct 1258 ATGGTTTTAGCTATGCAAGCTTTGAAACAG 1287 > AT3G25570.1 | Symbols: | Adenosylmethionine decarboxylase family protein | chr3:9287233-9289338 REVERSE LENGTH=1730 Length=1730 Score = 1271 bits (688), Expect = 0.0 Identities = 825/890 (93%), Gaps = 13/890 (1%) Strand=Plus/Plus Query 1 GAATCCTTTTCTTGACTTAGTTTTGG-TTTTTAATTGCTCTGTCTTTCTTGACAGGTGAA 59 |||||| ||||||||||||||| ||| ||||| ||||||||| ||||| ||||||||| Sbjct 142 GAATCCATTTCTTGACTTAGTTCTGGCTTTTT-ATTGCTCTG---TTCTTCACAGGTGAA 197 Query 60 TGAGAAATGGAGACTAAAGGTGGTAAAAAGAAGTCtagtaatagtagtagtagtagtagt 119 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 198 TGAGAAATGGAGACTAAAGGTGGTAAAAAGAAGTCTAGTAATAGTAGTAGTAG--G--G- 252 Query 120 aACAGTCTTTTCTACGAAGCTCCTCTTGGATACATCATTGAAGACGTTAGACCTAACGGT 179 | ||||||||||| ||||||||||||| | |||| |||||||||||||||||| |||||| Sbjct 253 A-CAGTCTTTTCTTCGAAGCTCCTCTTCGTTACAGCATTGAAGACGTTAGACCAAACGGT 311 Query 180 GGAATCAAGAAATTCAGATCTGCTGCTTACTCAAACATCACTCGCAAACCATCCTGATTT 239 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | Sbjct 312 GGAATCAAGAAATTCAGATCTGCTGCTTACTCAAACATCACTGGAAAACCATCCTGATAT 371 Query 240 TCTTCAATACGTTTTCCTCCTAACCACTTACTAACTGTGGTTGATCAACGTTCGCGATAA 299 || ||||||||||||| || |||||||||||||||||||||||||||| ||||||||||| Sbjct 372 TCCTCAATACGTTTTCTTCTTAACCACTTACTAACTGTGGTTGATCAATGTTCGCGATAA 431 Query 300 ATCTTCGTTCTTTCTTGTTTTGTTCTCCTTCAAAACTCATTTTTTGACGGCCTCTTCGTC 359 ||||||||| ||||||||||||||||| |||||||||||||||| || | ||||||| | Sbjct 432 ATCTTCGTTTTTTCTTGTTTTGTTCTCTTTCAAAACTCATTTTTCGATAGTCTCTTCGCC 491 Query 360 TTTTGGAAAATGGCGGTCTCTGCTATTGGTTTCGAAGGATTTGAGAAAAGGCTCGAAATT 419 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 492 TTTTGAAAAATGGCGGTCTCTGCTACAGGTTTCGAAGGATTTGAGAAAAGGCTCGAAATC 551 Query 420 TCATTCTTTGAGCCTAGTGTCTTTCTTGATCCCAAAGGAAATG-GTCTTCGTGCTCTTAC 478 |||||||||||| ||| || ||||||||||||| ||||||| | |||||||| ||||||| Sbjct 552 TCATTCTTTGAGACTACTGACTTTCTTGATCCCCAAGGAAA-GAGTCTTCGTTCTCTTAC 610 Query 479 TAAATCCCAGTTAGATGAGATCTTGACTCCAGCAGAATGCACAATTGTTTCCTCTCTCTC 538 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 611 CAAATCCCAGTTAGATGAGATCTTGACTCCAGCAGAGTGCACAATTGTTTCCTCTCTCAC 670 Query 539 AAACTCTTTGGTCGACTCTTACGTGCTCTCTGAATCTAGCCTCTTTGTCTATCCTTACAA 598 ||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 671 AAACTCTTTCGTTGACTCTTACGTGCTCTCTGAATCTAGTCTCTTTGTTTATCCTTACAA 730 Query 599 GATCATCATCAAAACATGCGGGACTACGAAGCTTCTCTTTTCGATCCCGCATATCCTTAG 658 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 731 GATCATCATCAAAACATGCGGGACTACTAAGCTTCTCTTGTCGATCCCGCATATCCTTAG 790 Query 659 TCTGGCTGATTCACTTTGCCTTACTGTCAAATCTGTCCGCTACACTCGTGGTAGCTTCAT 718 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || Sbjct 791 GCTGGCTGATTCACTTTGCCTCACTGTCAAATCTGTTCGCTACACTCGTGGTAGCTTTAT 850 Query 719 TTTCCCGGGAGCTCAATCTTACCCTCACCGTAGCTTCTCAGAGGAAGTTGCTTTACTTGA 778 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 851 TTTTCCGGGAGCTCAATCTTACCCTCACCGTAGCTTCTCAGAGGAAGTTGCTTTACTTGA 910 Query 779 TGGCTATTTTGGTAAGCTCAATGCAGGAAGCAAAGCTTTTGTCATGGGAGGGTCAGATAA 838 || ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 911 TGACTATTTTGGTAAGCTCAATGCAGGAAGCAAAGCTTTTGTGATGGGAGGTTCAGATAA 970 Query 839 TAACCCTCAGAGATGGCATGTCTACTCTGCTTCTTCTGCTTATGAATCTG 888 ||||||||||||||||||||| ||||||||||||||| || | ||||||| Sbjct 971 TAACCCTCAGAGATGGCATGTTTACTCTGCTTCTTCTACTGAAGAATCTG 1020 Score = 316 bits (171), Expect = 3e-85 Identities = 236/266 (89%), Gaps = 9/266 (3%) Strand=Plus/Plus Query 1119 GAGTTGGTGGATAGGGTTCTGGTTTGTTTTGAACCAGAAGAATTCTCTGTAGCGGTGCAT 1178 ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| Sbjct 1320 GAGTTGGTGGATAGGGTTCTGGTTTGTTTTGGACCGGAAGAATTTTCTGTAGCGGTGCAT 1379 Query 1179 GCCAATCTTGGAACCGAGCTATTGGCGTGTGATTGTATAGTTGATGTGAAGGGATACTTG 1238 || ||||||||||||||| ||||||||| ||||||| ||| ||||||||| |||||||| Sbjct 1380 GCTAATCTTGGAACCGAGGTATTGGCGTCTGATTGTGTAGCTGATGTGAACGGATACTTT 1439 Query 1239 AGCCAAGAGAGAGGACTAGAGGAGCTTGGACTTGGAGGTTCGGTTGTCTACTAGAAATAT 1298 ||||||||||||| ||||||||||||||||||||||||||||||| | ||| ||| || | Sbjct 1440 AGCCAAGAGAGAGAACTAGAGGAGCTTGGACTTGGAGGTTCGGTTCTATACCAGAGATTT 1499 Query 1299 GTCAA-ATCTGTTGAATGTTGCTCTCCAATATCTACTCTTGGGTTCTGTTGGAAATAGGA 1357 ||||| | |||||||||||||||| |||| |||||||||||||||||||| ||| | | Sbjct 1500 GTCAAGA-CTGTTGAATGTTGCTCACCAAAATCTACTCTTGGGTTCTGTTAGAA---G-A 1554 Query 1358 CGAAGTGGTTAAAGAAGAAGAATGAT 1383 | ||| ||||||||||||| |||| Sbjct 1555 --A-GTGATTAAAGAAGAAGAGTGAT 1577 Score = 315 bits (170), Expect = 1e-84 Identities = 197/210 (94%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 911 AAAAGCTTCGGTGTTCTTTAAAACCAATTCGGTTTCAGCTTCTGAGATGACTATTAGCTC 970 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 1079 AAAAGCTTCGGTGTTCTTTAAAACCAACTCTGTTTCAGCTTCTGAGATGACTATTAGCTC 1138 Query 971 TGGGATTAGAAACATCCTTCCAGCCTCTGAAATCTGTGATTTTAACTTTGATCCTTGCGG 1030 |||||| |||||||||||||||| ||||||||||||||||||||||||||| || ||||| Sbjct 1139 TGGGATCAGAAACATCCTTCCAGGCTCTGAAATCTGTGATTTTAACTTTGAACCGTGCGG 1198 Query 1031 TTACTCGATGAATTC-AGTTGAAGGAGATGCAGTTTCAACCATCCATGTGACTCCGGAAG 1089 ||||||||||||||| | ||||||| ||||| ||||| |||||||||||||| ||||||| Sbjct 1199 TTACTCGATGAATTCGA-TTGAAGGGGATGCGGTTTCTACCATCCATGTGACCCCGGAAG 1257 Query 1090 ACGGTTTTAGCTATGCAAGCTTTGAAACAG 1119 | |||||||||||||||||||||||||||| Sbjct 1258 ATGGTTTTAGCTATGCAAGCTTTGAAACAG 1287 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71636177715 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5