BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484313
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25572.1 | Symbols: CPuORF11 | conserved peptide upstream op... 1271 0.0
AT3G25570.1 | Symbols: | Adenosylmethionine decarboxylase fami... 1271 0.0
> AT3G25572.1 | Symbols: CPuORF11 | conserved peptide upstream
open reading frame 11 | chr3:9287263-9289338 REVERSE LENGTH=1700
Length=1700
Score = 1271 bits (688), Expect = 0.0
Identities = 825/890 (93%), Gaps = 13/890 (1%)
Strand=Plus/Plus
Query 1 GAATCCTTTTCTTGACTTAGTTTTGG-TTTTTAATTGCTCTGTCTTTCTTGACAGGTGAA 59
|||||| ||||||||||||||| ||| ||||| ||||||||| ||||| |||||||||
Sbjct 142 GAATCCATTTCTTGACTTAGTTCTGGCTTTTT-ATTGCTCTG---TTCTTCACAGGTGAA 197
Query 60 TGAGAAATGGAGACTAAAGGTGGTAAAAAGAAGTCtagtaatagtagtagtagtagtagt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 198 TGAGAAATGGAGACTAAAGGTGGTAAAAAGAAGTCTAGTAATAGTAGTAGTAG--G--G- 252
Query 120 aACAGTCTTTTCTACGAAGCTCCTCTTGGATACATCATTGAAGACGTTAGACCTAACGGT 179
| ||||||||||| ||||||||||||| | |||| |||||||||||||||||| ||||||
Sbjct 253 A-CAGTCTTTTCTTCGAAGCTCCTCTTCGTTACAGCATTGAAGACGTTAGACCAAACGGT 311
Query 180 GGAATCAAGAAATTCAGATCTGCTGCTTACTCAAACATCACTCGCAAACCATCCTGATTT 239
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct 312 GGAATCAAGAAATTCAGATCTGCTGCTTACTCAAACATCACTGGAAAACCATCCTGATAT 371
Query 240 TCTTCAATACGTTTTCCTCCTAACCACTTACTAACTGTGGTTGATCAACGTTCGCGATAA 299
|| ||||||||||||| || |||||||||||||||||||||||||||| |||||||||||
Sbjct 372 TCCTCAATACGTTTTCTTCTTAACCACTTACTAACTGTGGTTGATCAATGTTCGCGATAA 431
Query 300 ATCTTCGTTCTTTCTTGTTTTGTTCTCCTTCAAAACTCATTTTTTGACGGCCTCTTCGTC 359
||||||||| ||||||||||||||||| |||||||||||||||| || | ||||||| |
Sbjct 432 ATCTTCGTTTTTTCTTGTTTTGTTCTCTTTCAAAACTCATTTTTCGATAGTCTCTTCGCC 491
Query 360 TTTTGGAAAATGGCGGTCTCTGCTATTGGTTTCGAAGGATTTGAGAAAAGGCTCGAAATT 419
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 492 TTTTGAAAAATGGCGGTCTCTGCTACAGGTTTCGAAGGATTTGAGAAAAGGCTCGAAATC 551
Query 420 TCATTCTTTGAGCCTAGTGTCTTTCTTGATCCCAAAGGAAATG-GTCTTCGTGCTCTTAC 478
|||||||||||| ||| || ||||||||||||| ||||||| | |||||||| |||||||
Sbjct 552 TCATTCTTTGAGACTACTGACTTTCTTGATCCCCAAGGAAA-GAGTCTTCGTTCTCTTAC 610
Query 479 TAAATCCCAGTTAGATGAGATCTTGACTCCAGCAGAATGCACAATTGTTTCCTCTCTCTC 538
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 611 CAAATCCCAGTTAGATGAGATCTTGACTCCAGCAGAGTGCACAATTGTTTCCTCTCTCAC 670
Query 539 AAACTCTTTGGTCGACTCTTACGTGCTCTCTGAATCTAGCCTCTTTGTCTATCCTTACAA 598
||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 671 AAACTCTTTCGTTGACTCTTACGTGCTCTCTGAATCTAGTCTCTTTGTTTATCCTTACAA 730
Query 599 GATCATCATCAAAACATGCGGGACTACGAAGCTTCTCTTTTCGATCCCGCATATCCTTAG 658
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 731 GATCATCATCAAAACATGCGGGACTACTAAGCTTCTCTTGTCGATCCCGCATATCCTTAG 790
Query 659 TCTGGCTGATTCACTTTGCCTTACTGTCAAATCTGTCCGCTACACTCGTGGTAGCTTCAT 718
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 791 GCTGGCTGATTCACTTTGCCTCACTGTCAAATCTGTTCGCTACACTCGTGGTAGCTTTAT 850
Query 719 TTTCCCGGGAGCTCAATCTTACCCTCACCGTAGCTTCTCAGAGGAAGTTGCTTTACTTGA 778
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TTTTCCGGGAGCTCAATCTTACCCTCACCGTAGCTTCTCAGAGGAAGTTGCTTTACTTGA 910
Query 779 TGGCTATTTTGGTAAGCTCAATGCAGGAAGCAAAGCTTTTGTCATGGGAGGGTCAGATAA 838
|| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 911 TGACTATTTTGGTAAGCTCAATGCAGGAAGCAAAGCTTTTGTGATGGGAGGTTCAGATAA 970
Query 839 TAACCCTCAGAGATGGCATGTCTACTCTGCTTCTTCTGCTTATGAATCTG 888
||||||||||||||||||||| ||||||||||||||| || | |||||||
Sbjct 971 TAACCCTCAGAGATGGCATGTTTACTCTGCTTCTTCTACTGAAGAATCTG 1020
Score = 316 bits (171), Expect = 3e-85
Identities = 236/266 (89%), Gaps = 9/266 (3%)
Strand=Plus/Plus
Query 1119 GAGTTGGTGGATAGGGTTCTGGTTTGTTTTGAACCAGAAGAATTCTCTGTAGCGGTGCAT 1178
||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct 1320 GAGTTGGTGGATAGGGTTCTGGTTTGTTTTGGACCGGAAGAATTTTCTGTAGCGGTGCAT 1379
Query 1179 GCCAATCTTGGAACCGAGCTATTGGCGTGTGATTGTATAGTTGATGTGAAGGGATACTTG 1238
|| ||||||||||||||| ||||||||| ||||||| ||| ||||||||| ||||||||
Sbjct 1380 GCTAATCTTGGAACCGAGGTATTGGCGTCTGATTGTGTAGCTGATGTGAACGGATACTTT 1439
Query 1239 AGCCAAGAGAGAGGACTAGAGGAGCTTGGACTTGGAGGTTCGGTTGTCTACTAGAAATAT 1298
||||||||||||| ||||||||||||||||||||||||||||||| | ||| ||| || |
Sbjct 1440 AGCCAAGAGAGAGAACTAGAGGAGCTTGGACTTGGAGGTTCGGTTCTATACCAGAGATTT 1499
Query 1299 GTCAA-ATCTGTTGAATGTTGCTCTCCAATATCTACTCTTGGGTTCTGTTGGAAATAGGA 1357
||||| | |||||||||||||||| |||| |||||||||||||||||||| ||| | |
Sbjct 1500 GTCAAGA-CTGTTGAATGTTGCTCACCAAAATCTACTCTTGGGTTCTGTTAGAA---G-A 1554
Query 1358 CGAAGTGGTTAAAGAAGAAGAATGAT 1383
| ||| ||||||||||||| ||||
Sbjct 1555 --A-GTGATTAAAGAAGAAGAGTGAT 1577
Score = 315 bits (170), Expect = 1e-84
Identities = 197/210 (94%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 911 AAAAGCTTCGGTGTTCTTTAAAACCAATTCGGTTTCAGCTTCTGAGATGACTATTAGCTC 970
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1079 AAAAGCTTCGGTGTTCTTTAAAACCAACTCTGTTTCAGCTTCTGAGATGACTATTAGCTC 1138
Query 971 TGGGATTAGAAACATCCTTCCAGCCTCTGAAATCTGTGATTTTAACTTTGATCCTTGCGG 1030
|||||| |||||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct 1139 TGGGATCAGAAACATCCTTCCAGGCTCTGAAATCTGTGATTTTAACTTTGAACCGTGCGG 1198
Query 1031 TTACTCGATGAATTC-AGTTGAAGGAGATGCAGTTTCAACCATCCATGTGACTCCGGAAG 1089
||||||||||||||| | ||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct 1199 TTACTCGATGAATTCGA-TTGAAGGGGATGCGGTTTCTACCATCCATGTGACCCCGGAAG 1257
Query 1090 ACGGTTTTAGCTATGCAAGCTTTGAAACAG 1119
| ||||||||||||||||||||||||||||
Sbjct 1258 ATGGTTTTAGCTATGCAAGCTTTGAAACAG 1287
> AT3G25570.1 | Symbols: | Adenosylmethionine decarboxylase family
protein | chr3:9287233-9289338 REVERSE LENGTH=1730
Length=1730
Score = 1271 bits (688), Expect = 0.0
Identities = 825/890 (93%), Gaps = 13/890 (1%)
Strand=Plus/Plus
Query 1 GAATCCTTTTCTTGACTTAGTTTTGG-TTTTTAATTGCTCTGTCTTTCTTGACAGGTGAA 59
|||||| ||||||||||||||| ||| ||||| ||||||||| ||||| |||||||||
Sbjct 142 GAATCCATTTCTTGACTTAGTTCTGGCTTTTT-ATTGCTCTG---TTCTTCACAGGTGAA 197
Query 60 TGAGAAATGGAGACTAAAGGTGGTAAAAAGAAGTCtagtaatagtagtagtagtagtagt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 198 TGAGAAATGGAGACTAAAGGTGGTAAAAAGAAGTCTAGTAATAGTAGTAGTAG--G--G- 252
Query 120 aACAGTCTTTTCTACGAAGCTCCTCTTGGATACATCATTGAAGACGTTAGACCTAACGGT 179
| ||||||||||| ||||||||||||| | |||| |||||||||||||||||| ||||||
Sbjct 253 A-CAGTCTTTTCTTCGAAGCTCCTCTTCGTTACAGCATTGAAGACGTTAGACCAAACGGT 311
Query 180 GGAATCAAGAAATTCAGATCTGCTGCTTACTCAAACATCACTCGCAAACCATCCTGATTT 239
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct 312 GGAATCAAGAAATTCAGATCTGCTGCTTACTCAAACATCACTGGAAAACCATCCTGATAT 371
Query 240 TCTTCAATACGTTTTCCTCCTAACCACTTACTAACTGTGGTTGATCAACGTTCGCGATAA 299
|| ||||||||||||| || |||||||||||||||||||||||||||| |||||||||||
Sbjct 372 TCCTCAATACGTTTTCTTCTTAACCACTTACTAACTGTGGTTGATCAATGTTCGCGATAA 431
Query 300 ATCTTCGTTCTTTCTTGTTTTGTTCTCCTTCAAAACTCATTTTTTGACGGCCTCTTCGTC 359
||||||||| ||||||||||||||||| |||||||||||||||| || | ||||||| |
Sbjct 432 ATCTTCGTTTTTTCTTGTTTTGTTCTCTTTCAAAACTCATTTTTCGATAGTCTCTTCGCC 491
Query 360 TTTTGGAAAATGGCGGTCTCTGCTATTGGTTTCGAAGGATTTGAGAAAAGGCTCGAAATT 419
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 492 TTTTGAAAAATGGCGGTCTCTGCTACAGGTTTCGAAGGATTTGAGAAAAGGCTCGAAATC 551
Query 420 TCATTCTTTGAGCCTAGTGTCTTTCTTGATCCCAAAGGAAATG-GTCTTCGTGCTCTTAC 478
|||||||||||| ||| || ||||||||||||| ||||||| | |||||||| |||||||
Sbjct 552 TCATTCTTTGAGACTACTGACTTTCTTGATCCCCAAGGAAA-GAGTCTTCGTTCTCTTAC 610
Query 479 TAAATCCCAGTTAGATGAGATCTTGACTCCAGCAGAATGCACAATTGTTTCCTCTCTCTC 538
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 611 CAAATCCCAGTTAGATGAGATCTTGACTCCAGCAGAGTGCACAATTGTTTCCTCTCTCAC 670
Query 539 AAACTCTTTGGTCGACTCTTACGTGCTCTCTGAATCTAGCCTCTTTGTCTATCCTTACAA 598
||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 671 AAACTCTTTCGTTGACTCTTACGTGCTCTCTGAATCTAGTCTCTTTGTTTATCCTTACAA 730
Query 599 GATCATCATCAAAACATGCGGGACTACGAAGCTTCTCTTTTCGATCCCGCATATCCTTAG 658
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 731 GATCATCATCAAAACATGCGGGACTACTAAGCTTCTCTTGTCGATCCCGCATATCCTTAG 790
Query 659 TCTGGCTGATTCACTTTGCCTTACTGTCAAATCTGTCCGCTACACTCGTGGTAGCTTCAT 718
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 791 GCTGGCTGATTCACTTTGCCTCACTGTCAAATCTGTTCGCTACACTCGTGGTAGCTTTAT 850
Query 719 TTTCCCGGGAGCTCAATCTTACCCTCACCGTAGCTTCTCAGAGGAAGTTGCTTTACTTGA 778
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TTTTCCGGGAGCTCAATCTTACCCTCACCGTAGCTTCTCAGAGGAAGTTGCTTTACTTGA 910
Query 779 TGGCTATTTTGGTAAGCTCAATGCAGGAAGCAAAGCTTTTGTCATGGGAGGGTCAGATAA 838
|| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 911 TGACTATTTTGGTAAGCTCAATGCAGGAAGCAAAGCTTTTGTGATGGGAGGTTCAGATAA 970
Query 839 TAACCCTCAGAGATGGCATGTCTACTCTGCTTCTTCTGCTTATGAATCTG 888
||||||||||||||||||||| ||||||||||||||| || | |||||||
Sbjct 971 TAACCCTCAGAGATGGCATGTTTACTCTGCTTCTTCTACTGAAGAATCTG 1020
Score = 316 bits (171), Expect = 3e-85
Identities = 236/266 (89%), Gaps = 9/266 (3%)
Strand=Plus/Plus
Query 1119 GAGTTGGTGGATAGGGTTCTGGTTTGTTTTGAACCAGAAGAATTCTCTGTAGCGGTGCAT 1178
||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct 1320 GAGTTGGTGGATAGGGTTCTGGTTTGTTTTGGACCGGAAGAATTTTCTGTAGCGGTGCAT 1379
Query 1179 GCCAATCTTGGAACCGAGCTATTGGCGTGTGATTGTATAGTTGATGTGAAGGGATACTTG 1238
|| ||||||||||||||| ||||||||| ||||||| ||| ||||||||| ||||||||
Sbjct 1380 GCTAATCTTGGAACCGAGGTATTGGCGTCTGATTGTGTAGCTGATGTGAACGGATACTTT 1439
Query 1239 AGCCAAGAGAGAGGACTAGAGGAGCTTGGACTTGGAGGTTCGGTTGTCTACTAGAAATAT 1298
||||||||||||| ||||||||||||||||||||||||||||||| | ||| ||| || |
Sbjct 1440 AGCCAAGAGAGAGAACTAGAGGAGCTTGGACTTGGAGGTTCGGTTCTATACCAGAGATTT 1499
Query 1299 GTCAA-ATCTGTTGAATGTTGCTCTCCAATATCTACTCTTGGGTTCTGTTGGAAATAGGA 1357
||||| | |||||||||||||||| |||| |||||||||||||||||||| ||| | |
Sbjct 1500 GTCAAGA-CTGTTGAATGTTGCTCACCAAAATCTACTCTTGGGTTCTGTTAGAA---G-A 1554
Query 1358 CGAAGTGGTTAAAGAAGAAGAATGAT 1383
| ||| ||||||||||||| ||||
Sbjct 1555 --A-GTGATTAAAGAAGAAGAGTGAT 1577
Score = 315 bits (170), Expect = 1e-84
Identities = 197/210 (94%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 911 AAAAGCTTCGGTGTTCTTTAAAACCAATTCGGTTTCAGCTTCTGAGATGACTATTAGCTC 970
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1079 AAAAGCTTCGGTGTTCTTTAAAACCAACTCTGTTTCAGCTTCTGAGATGACTATTAGCTC 1138
Query 971 TGGGATTAGAAACATCCTTCCAGCCTCTGAAATCTGTGATTTTAACTTTGATCCTTGCGG 1030
|||||| |||||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct 1139 TGGGATCAGAAACATCCTTCCAGGCTCTGAAATCTGTGATTTTAACTTTGAACCGTGCGG 1198
Query 1031 TTACTCGATGAATTC-AGTTGAAGGAGATGCAGTTTCAACCATCCATGTGACTCCGGAAG 1089
||||||||||||||| | ||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct 1199 TTACTCGATGAATTCGA-TTGAAGGGGATGCGGTTTCTACCATCCATGTGACCCCGGAAG 1257
Query 1090 ACGGTTTTAGCTATGCAAGCTTTGAAACAG 1119
| ||||||||||||||||||||||||||||
Sbjct 1258 ATGGTTTTAGCTATGCAAGCTTTGAAACAG 1287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71636177715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5