BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484315

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25577.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   457    4e-128


> AT3G25577.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 30201 Blast hits to 
17322 proteins in 780 species: Archae - 12; Bacteria - 1396; 
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; 
Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:9291686-9292092 
FORWARD LENGTH=407
Length=407

 Score =  457 bits (247),  Expect = 4e-128
 Identities = 348/392 (89%), Gaps = 25/392 (6%)
 Strand=Plus/Plus

Query  1    ATGATGAAACAGTATTTGTCCAAGGTCACCGAGTTCTTTAAGGCTCCTATGACCAACGGT  60
            ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATGATGAAACAGTATATGTCCAAGGTGACCGAGTTCTTTAAGGCTCCTATGACCAACGGT  60

Query  61   ATGGCTCTTGGTTCAGCGGCCGTCGCAGTTATGGCAAGTAAGCGAGACCT-TCTCATGGA  119
            |||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct  61   ATGGCTCTTGGTACAGCGGCCGTCGCAGTTATGGCAAGCAAGCGAGACCTAT-TCATGGA  119

Query  120  TCACTTAGCCACGAAGAAGAAGGAGTACTTGAAGGAGGAGAAGTCGGCGACGGGCTTGAA  179
             || || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  120  ACAGTTGGCCACAAAGAAGAAGGAGTACTTCAAGGAGGAGAAGTCGGCGACGGGCTTGAA  179

Query  180  GGAGAACGTGGTGGAGGCGGCTAAGATGGAGTCGGCGACGGACGTCAAGGAGAACGCAGA  239
            |||||||||||||||||| | ||||| |||||||||| ||||||| ||||||||||||| 
Sbjct  180  GGAGAACGTGGTGGAGGCCGATAAGAAGGAGTCGGCGGCGGACGTGAAGGAGAACGCAGT  239

Query  240  ATAGAGGACTAGCGTTAATGAgttttaatttg--------------atgttttctag-t-  283
            |||||||| |||||||||||||||||| ||||              ||||||||||| | 
Sbjct  240  ATAGAGGAGTAGCGTTAATGAGTTTTAGTTTGGTCTTTTGGTTTTGATGTTTTCTAGCTA  299

Query  284  -tt-gatcagttttgtg-ttttttttaatcgtt-cttttaagttttAACATCGCTGGCTA  339
             || ||||||||| ||| ||||||||||||||| ||||||||||||||||||| | ||||
Sbjct  300  GTTTGATCAGTTT-GTGGTTTTTTTTAATCGTTTCTTTTAAGTTTTAACATCGGTAGCTA  358

Query  340  -A-TGATGTTTAGAGTCAAAACTTGATAATAA  369
             | |||||||||||||||||||||||||||||
Sbjct  359  TAATGATGTTTAGAGTCAAAACTTGATAATAA  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5