BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484316
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25580.1 | Symbols: | Thioredoxin superfamily protein | chr... 1184 0.0
AT2G18990.1 | Symbols: TXND9 | thioredoxin domain-containing pr... 835 0.0
> AT3G25580.1 | Symbols: | Thioredoxin superfamily protein | chr3:9292485-9294347
FORWARD LENGTH=904
Length=904
Score = 1184 bits (641), Expect = 0.0
Identities = 741/787 (94%), Gaps = 15/787 (2%)
Strand=Plus/Plus
Query 1 TCATCATCAACAATTCGAATCTGAAATCTGCAATTCACGAGAAGAAG----CTTTTGTAA 56
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 11 TCATCATCAACAATTCGAATCTGAAATCTGCAATTCACGAGAAGAAGTTTTTTTTTGTAA 70
Query 57 CAATGGCGAATCCAATTCAAGAGATTATTGAGAAACAAGTTCTATCGGTAGCGAAAGCTA 116
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 71 CAATGGCGAATCCAATTCAAGAGATTATTGAGAAACAAGTTCTAACGGTAGCGAAAGCTA 130
Query 117 TGGAGGATAAGCTAGACGACGAGATTGCGTCTCTGGAGAAGCTTGACGAAGACGATTTGG 176
||||||||||| ||||||||||||| ||||||||||| |||||||| ||||| |||||||
Sbjct 131 TGGAGGATAAGATAGACGACGAGATAGCGTCTCTGGAAAAGCTTGATGAAGATGATTTGG 190
Query 177 AAGTTTTGAGAGAGAGGAGATTGAAGCAGATGAAGAAAATGGCGGAGAAGAAGAAACGTT 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 191 AAGTTTTGAGAGAGAGGAGATTGAAGCAGATGAAGAAAATGGCGGAGAAGAAGAAACGGT 250
Query 237 GGATGAGTCTTGGACATGGTGAATACTCTGAGATTCATTCTGAGAAAGATTTCTTCTCCG 296
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 GGATGAGTATTGGACATGGTGAATACTCTGAGATTCATTCTGAGAAAGATTTCTTCTCCG 310
Query 297 TTGTTAAAGCTAGTGAACGCGTCGTTTGTCACTTCTACCGTGAGAATTGGCCTTGTAAAG 356
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 311 TTGTTAAATCTAGTGAACGCGTCGTTTGTCACTTCTACCGTGAGAATTGGCCCTGTAAAG 370
Query 357 TGATGGATAAACACATGA-CTATATTGGCAAAGCAACACATTGAGACACGTTTCGTGAAG 415
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGATGGATAAACACATGAGC-ATATTGGCAAAGCAACACATTGAGACACGTTTCGTGAAG 429
Query 416 ATCCAAGCTGAGAAAAGTCCATTCTTGGCTGAGAGGCTTAAGATTGTTGTTCTTCCCACC 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 ATCCAAGCTGAGAAAAGTCCATTCTTGGCTGAGAGGCTTAAGATTGTTGTTCTTCCCACT 489
Query 476 CTTGCCCTCATTAAGAATACTAAAGTGGATGATTATGTGGTTGGGTTCAATGAGCTGGGA 535
||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 490 CTTGCCCTCATTAAGAACACTAAAGTCGATGATTATGTGGTTGGGTTCAATGAACTGGGA 549
Query 536 GGGAAAGATGATTTCAGCACAGAGGATCTGGAAGAGAGAATAGCCAGAGCACAAGTGATC 595
|||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 550 GGGAAAGATGATTTTAGCACAGAAGATCTTGAAGAGAGAATAGCCAGAGCGCAAGTGATC 609
Query 596 CATTACGAGGGAGAGTCATCTCTAAAACCGAAGTCTACAACACAAGTCAGAAGGAACGTG 655
|||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 610 CATTACGAGGGAGAATCATCTCTTAAACAAAAGTCTACAACACAAGTCAGAAGGAACGTG 669
Query 656 AGGCAGAGTGCTCGTTCAGATTCTGACTCCGAATAAATCC-TATGTCTTTTCAACAAAGG 714
|||||||||||||||||||||||||||||||||||||||| | | |||| |||| | ||
Sbjct 670 AGGCAGAGTGCTCGTTCAGATTCTGACTCCGAATAAATCCCTTT-TCTTATCAA-A--GG 725
Query 715 TTTGTTCGTTTGTGTCCTGTTGTTATTTGTAATACTAAGTAGTAATTCATCGTTTTGGTG 774
||||||||||||| |||| |||||| |||||||||| | | |||||||||||||| ||
Sbjct 726 TTTGTTCGTTTGTATCCTCTTGTTAGTTGTAATACT---T-GCAATTCATCGTTTTGATG 781
Query 775 ATCTAAA 781
||| |||
Sbjct 782 ATCAAAA 788
> AT2G18990.1 | Symbols: TXND9 | thioredoxin domain-containing
protein 9 homolog | chr2:8238691-8240002 REVERSE LENGTH=866
Length=866
Score = 835 bits (452), Expect = 0.0
Identities = 604/678 (89%), Gaps = 7/678 (1%)
Strand=Plus/Plus
Query 55 AACAATGGCGAATCCAATTCAAGAGATTATTGAGAAACAAGTTCTATCGGTAGCGAAAGC 114
||| ||||||||||| |||||||||||| | ||||| ||||||||| |||| || |||||
Sbjct 67 AACCATGGCGAATCCTATTCAAGAGATTCTGGAGAAGCAAGTTCTAACGGTGGCTAAAGC 126
Query 115 TATGGAGGATAAGCTAGACGACGAGATTGCGTCTCTGGAGAAGCTTGACGAAGACGATTT 174
|||||| |||||| ||||||||||||| || ||| | || ||||||||||| |||||| |
Sbjct 127 TATGGAAGATAAGATAGACGACGAGATCGCCTCTTTAGAAAAGCTTGACGAGGACGATCT 186
Query 175 GGAAGTTTTGAGAGAGAGGAGATTGAAGCAGATGAAGAAAATGGCGGAGAAGAAGAAACG 234
|| |||||||||||||| || || ||||| |||||||||||||| ||||||||||||||
Sbjct 187 AGAGGTTTTGAGAGAGAGAAGGTTAAAGCAAATGAAGAAAATGGCAGAGAAGAAGAAACG 246
Query 235 TTGGATGAGTCTTGGACATGGTGAATACTCTGAGATTCATTCTGAGAAAGATTTCTTCTC 294
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 247 TTGGATTAGTCTTGGACATGGTGAATACTCTGAGATCCATTCTGAGAAAGACTTCTTCTC 306
Query 295 CGTTGTTAAAGCTAGTGAACGCGTCGTTTGTCACTTCTACCGTGAGAATTGGCCTTGTAA 354
||| |||||||| || ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct 307 CGTCGTTAAAGCCAGCGAACGCGTCGTCTGCCATTTCTACCGCGAGAATTGGCCATGTAA 366
Query 355 AGTGATGGATAAACACATGACTATATTGGCAAAGCAACACATTGAGACACGTTTCGTGAA 414
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 367 AGTGATGGATAAGCACATGAGTATATTGGCAAAGCAACACATTGAGACACGTTTTGTGAA 426
Query 415 GATCCAAGCTGAGAAAAGTCCATTCTTGGCTGAGAGGCTTAAGATTGTTGTTCTTCCCAC 474
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct 427 GATCCAAGCTGAGAAAAGTCCGTTCTTGGCTGAGAGGCTCAAGATTGTTGTTCTACCTAC 486
Query 475 CCTTGCCCTCATTAAGAATACTAAAGTGGATGATTATGTGGTTGGGTTCAATGAGCTGGG 534
||||| || |||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 487 TCTTGCACTTATTAAGAACACTAAAGTCGATGATTATGTGGTTGGGTTCAATGAGCTTGG 546
Query 535 AGGGAAAGATGATTTCAGCACAGAGGATCTGGAAGAGAGAATAGCCAGAGCACAAGTGAT 594
||||||||||||||||||||| |||||| |||||||||||||||| ||||| ||||||||
Sbjct 547 AGGGAAAGATGATTTCAGCACTGAGGATTTGGAAGAGAGAATAGCTAGAGCGCAAGTGAT 606
Query 595 CCATTACGAGGGAGAGTCATC-TC--TAAAACCGAAGTCTACAACACAAGTCAGAAGGAA 651
|||||||| ||||||||||| || | ||||| ||||| ||||||||||| ||||||||
Sbjct 607 TCATTACGATGGAGAGTCATCGTCGCTTAAACCAAAGTCGACAACACAAGTTAGAAGGAA 666
Query 652 CGTGAGGCAGAGTGCTCGTTCAGATTCTGACTCCGAATAAA-TCCTATG-TCTTTTCAAC 709
|||||||||||||||||||||||||| ||||||||||| | || | | | |||||| |
Sbjct 667 TGTGAGGCAGAGTGCTCGTTCAGATTCAGACTCCGAATAGACTC-TCGGGT-TTTTCAGC 724
Query 710 AAAGGTTTGTTCGTTTGT 727
||| ||||||| || |||
Sbjct 725 AAACGTTTGTTGGTATGT 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37977015132
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5