BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484322
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25597.1 | Symbols: | unknown protein; LOCATED IN: endomemb... 1190 0.0
> AT3G25597.1 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT1G26140.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink). | chr3:9305922-9306766
FORWARD LENGTH=845
Length=845
Score = 1190 bits (644), Expect = 0.0
Identities = 789/855 (92%), Gaps = 25/855 (3%)
Strand=Plus/Plus
Query 1 ATTTATTATATTTGCTTGTTTGATTAGCCTTTTCCCAATGTCTTCCTTATAGAAGCAAAG 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTTATTATATTTGCTTCTTTGATTAGCCTTTTCCCAATGTCTTCCTTATAGAAGCAAAG 60
Query 61 AACAAAGGAGTTCCTTCAAACCAAATATCCCAAATTACTAAGATATGTTAGGATTTAGTT 120
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 61 AACAAAGGAGTTCCTTCAAACAAAATATCCCAAATTACTAAAATATGTTAGGATTTAGTC 120
Query 121 TGTTCTTTAATATCTTCTATTATCTTTCTATTTCTTATTCGA-CTCTCTCTTTCAAGATT 179
||||||||||| ||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 121 TGTTCTTTAATTTCTTCTATTATCTTTCTATTTCTTA-CCCATCTCTCTCTTTCAAGATT 179
Query 180 CCATGGAAGATCTTAACACATTTGCAGCTGATTGCGTCGTTGTATCGTGTTGTTGCAACT 239
||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||
Sbjct 180 CCATGGAAGATCTTAACGCATTTGCAGCTGATTGCGTTGTTGTATCATGTTGTTGCAACT 239
Query 240 GTCTTGTGCTCCAGATGGCGATCTTCATCTTCCTTGGACTTCCTCAAAAGCTTGTCAAGA 299
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTCTTGTGCTCCAGATCGCAATCTTCATCTTCCTTGGACTTCCTCAAAAGCTTGTCAAGA 299
Query 300 ACACAAGAAAGTGTTACACAAAATGGGGGATAAATCG-AGGAATAAAAAGCATGGGGCTT 358
||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||
Sbjct 300 ACACAAGAAAGTGTTACACAAAATGGGGGATAAATCGAAGG-ATAAAAAGAATGGGGCTT 358
Query 359 TGTTGTGAATGTCGAGAAAATACCGAGGTTGATTTGGAATGGAGAAAAGAGTC--T-ATG 415
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 359 TGTTTTGAATGTCGAGAAAATACCGAGGTTGATTCGGAATGGAGAAAAGAGTCTATGATG 418
Query 416 ATGAGTATGGAGATGGAAGGTTTTGGGTGTATTGAAGAAGTTGAACAAGCT-TTAGAGGA 474
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 419 ATGAGTATGGAGATGGAAGGTTTTGGGTGTATTGAAGAAGTTGAACAAG-TCTTAGAGGA 477
Query 475 GTTTTCAAAGAATGGTGAGTTTTTGTTTGGAAGCTTCTGGGGACAAGAGAGGGTTCAAAA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GTTTTCAAAGAATGGTGAGTTTTTGTTTGGAAGCTTCTGGGGACAAGAGAGGGTTCAAAA 537
Query 535 TTCTTCGTCAATGTCAAGTTGTGTTAATGACAACTTTGACCTAAGATTTGTAAGTCGTTA 594
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 538 TTCTTCGTCAATGTCAAATTGTGGTAATGACAACTTTGACCTAAGATTTGTAAGTCGTTA 597
Query 595 TGAGATAATCGAAGAAAATTTCTACTCCTTGGATTATATATTCACAACTTCACATAAATT 654
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 598 TGAGATAATCGAAGAAAATTTCTACTCTTTGGATTATATATTCACAACTTCACATAAATT 657
Query 655 ATGTTGAAATTAATGGACATAAAAATACATATCCACTAGGCtttttttttttttttttt- 713
||||||||||||||| |||||||| | | ||||||||| | ||| || ||||
Sbjct 658 ATGTTGAAATTAATG-ACATAAAAGT---T-TCCACTAGG-TATTTGCTTAAATTTTAGA 711
Query 714 --ttCTTATATTTTT--AA-CAAATGATATGCTTTAAGAAAAATTCATATAATTGACAA- 767
||| ||| ||||| || |||||||||||||| ||||||| |||| ||||| || ||
Sbjct 712 AATTCATATTTTTTTTTAAACAAATGATATGCTTCAAGAAAATTTCACATAATGGA-AAC 770
Query 768 TTCCATGCTCTTTTAATATCCACCTCATACAAAATT-AA-ATACCATAATGAATTTTGAG 825
|| |||||||||||||||||| | ||| | |||||| || ||| || |||||||||||||
Sbjct 771 TTTCATGCTCTTTTAATATCCTCTTCAGAAAAAATTCAATATATCACAATGAATTTTGAG 830
Query 826 TGCCAAATGGTGTTG 840
|||||||||| ||||
Sbjct 831 TGCCAAATGGGGTTG 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5