BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484322 Length=840 Score E Sequences producing significant alignments: (Bits) Value AT3G25597.1 | Symbols: | unknown protein; LOCATED IN: endomemb... 1190 0.0 > AT3G25597.1 | Symbols: | unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:9305922-9306766 FORWARD LENGTH=845 Length=845 Score = 1190 bits (644), Expect = 0.0 Identities = 789/855 (92%), Gaps = 25/855 (3%) Strand=Plus/Plus Query 1 ATTTATTATATTTGCTTGTTTGATTAGCCTTTTCCCAATGTCTTCCTTATAGAAGCAAAG 60 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATTTATTATATTTGCTTCTTTGATTAGCCTTTTCCCAATGTCTTCCTTATAGAAGCAAAG 60 Query 61 AACAAAGGAGTTCCTTCAAACCAAATATCCCAAATTACTAAGATATGTTAGGATTTAGTT 120 ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 61 AACAAAGGAGTTCCTTCAAACAAAATATCCCAAATTACTAAAATATGTTAGGATTTAGTC 120 Query 121 TGTTCTTTAATATCTTCTATTATCTTTCTATTTCTTATTCGA-CTCTCTCTTTCAAGATT 179 ||||||||||| ||||||||||||||||||||||||| | | ||||||||||||||||| Sbjct 121 TGTTCTTTAATTTCTTCTATTATCTTTCTATTTCTTA-CCCATCTCTCTCTTTCAAGATT 179 Query 180 CCATGGAAGATCTTAACACATTTGCAGCTGATTGCGTCGTTGTATCGTGTTGTTGCAACT 239 ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||| Sbjct 180 CCATGGAAGATCTTAACGCATTTGCAGCTGATTGCGTTGTTGTATCATGTTGTTGCAACT 239 Query 240 GTCTTGTGCTCCAGATGGCGATCTTCATCTTCCTTGGACTTCCTCAAAAGCTTGTCAAGA 299 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 240 GTCTTGTGCTCCAGATCGCAATCTTCATCTTCCTTGGACTTCCTCAAAAGCTTGTCAAGA 299 Query 300 ACACAAGAAAGTGTTACACAAAATGGGGGATAAATCG-AGGAATAAAAAGCATGGGGCTT 358 ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| Sbjct 300 ACACAAGAAAGTGTTACACAAAATGGGGGATAAATCGAAGG-ATAAAAAGAATGGGGCTT 358 Query 359 TGTTGTGAATGTCGAGAAAATACCGAGGTTGATTTGGAATGGAGAAAAGAGTC--T-ATG 415 |||| ||||||||||||||||||||||||||||| |||||||||||||||||| | ||| Sbjct 359 TGTTTTGAATGTCGAGAAAATACCGAGGTTGATTCGGAATGGAGAAAAGAGTCTATGATG 418 Query 416 ATGAGTATGGAGATGGAAGGTTTTGGGTGTATTGAAGAAGTTGAACAAGCT-TTAGAGGA 474 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 419 ATGAGTATGGAGATGGAAGGTTTTGGGTGTATTGAAGAAGTTGAACAAG-TCTTAGAGGA 477 Query 475 GTTTTCAAAGAATGGTGAGTTTTTGTTTGGAAGCTTCTGGGGACAAGAGAGGGTTCAAAA 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 GTTTTCAAAGAATGGTGAGTTTTTGTTTGGAAGCTTCTGGGGACAAGAGAGGGTTCAAAA 537 Query 535 TTCTTCGTCAATGTCAAGTTGTGTTAATGACAACTTTGACCTAAGATTTGTAAGTCGTTA 594 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 538 TTCTTCGTCAATGTCAAATTGTGGTAATGACAACTTTGACCTAAGATTTGTAAGTCGTTA 597 Query 595 TGAGATAATCGAAGAAAATTTCTACTCCTTGGATTATATATTCACAACTTCACATAAATT 654 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 598 TGAGATAATCGAAGAAAATTTCTACTCTTTGGATTATATATTCACAACTTCACATAAATT 657 Query 655 ATGTTGAAATTAATGGACATAAAAATACATATCCACTAGGCtttttttttttttttttt- 713 ||||||||||||||| |||||||| | | ||||||||| | ||| || |||| Sbjct 658 ATGTTGAAATTAATG-ACATAAAAGT---T-TCCACTAGG-TATTTGCTTAAATTTTAGA 711 Query 714 --ttCTTATATTTTT--AA-CAAATGATATGCTTTAAGAAAAATTCATATAATTGACAA- 767 ||| ||| ||||| || |||||||||||||| ||||||| |||| ||||| || || Sbjct 712 AATTCATATTTTTTTTTAAACAAATGATATGCTTCAAGAAAATTTCACATAATGGA-AAC 770 Query 768 TTCCATGCTCTTTTAATATCCACCTCATACAAAATT-AA-ATACCATAATGAATTTTGAG 825 || |||||||||||||||||| | ||| | |||||| || ||| || ||||||||||||| Sbjct 771 TTTCATGCTCTTTTAATATCCTCTTCAGAAAAAATTCAATATATCACAATGAATTTTGAG 830 Query 826 TGCCAAATGGTGTTG 840 |||||||||| |||| Sbjct 831 TGCCAAATGGGGTTG 845 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40940829805 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5