BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484323
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25600.1 | Symbols: | Calcium-binding EF-hand family protei... 1003 0.0
> AT3G25600.1 | Symbols: | Calcium-binding EF-hand family protein
| chr3:9307254-9307967 FORWARD LENGTH=714
Length=714
Score = 1003 bits (543), Expect = 0.0
Identities = 641/685 (94%), Gaps = 20/685 (3%)
Strand=Plus/Plus
Query 1 CAACTTCGTCTCCAAAAACGCGGTTTCTTCGACTTTAAGAAACTATTCATCTCCAAACTT 60
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 CAACTTCTTCTCCAAAAACGCGGTTTCTTCGAGTTTAAGAAACTATTCATCTCCAAACTT 60
Query 61 TCaaaaaaaaaccctaaaa-taaaaaaaTCTC-TTCCTTCTTCTTCCTCCATCAATGGCG 118
||||||||||| ||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct 61 TCAAAAAAAAA-CCTAAAACAAAAAAAATCTCTTTCCTTCTTCTTTCTCCATCAATGGCG 119
Query 119 TCAACAAAACCTACCGATCAAATCAAACAACTCAAAGACATCTTCGCTCGCTTCGACATG 178
||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 120 TCAACAAAACCAACCGATCAAATCAAACAACTCAAAGATATCTTCGCTCGTTTCGACATG 179
Query 179 GACAACGACGGAAGCTTAACACAGCTTGAACTCGCCGCTCTTCTCCGTTCTCTCGGAATC 238
||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 180 GACAAGGACGGAAGCTTAACGCAGCTAGAACTCGCCGCTCTTCTGCGTTCTCTCGGAATC 239
Query 239 AAACCTCGCGGCGATCAAATCTCTCTTCT-TCTCAACCAAATCGACCGTAACGGTAACGG 297
||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 240 AAACCTCGCGGCGATCAAATCTCTCTTCTGT-TGAACCAAATCGACCGTAACGGTAACGG 298
Query 298 ATCCGTCGAGTTCGACGAGCTCGTTGTCGCGATATTGCCGGATATTAACGAAGAGGTTTT 357
|||||| |||||||||||||| || || ||||||||||||||||| ||||||||||||||
Sbjct 299 ATCCGTAGAGTTCGACGAGCTGGTCGTGGCGATATTGCCGGATATAAACGAAGAGGTTTT 358
Query 358 GATTAATCAAGAACAGTTAATGGAGGTTTTCCGTTCGTTTGATCGTGACGGTAACGGTTC 417
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 359 GATAAATCAAGAACAGTTGATGGAGGTTTTCCGTTCGTTTGATCGTGACGGAAACGGTTC 418
Query 418 AATCACGGCGGCGGAACTTGCTGGGTCAATGGCTAAAATGGGACATCCGTTGACTTACCG 477
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AATAACGGCGGCGGAACTTGCTGGGTCAATGGCTAAAATGGGACATCCGTTGACTTACCG 478
Query 478 TGAATTAACGGAAATGATGAGGGAAGCTGATTCTAACGGTGACGGTGTTATTAGTTTTAA 537
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGAATTAACGGAAATGATGACGGAAGCTGATTCTAACGGTGACGGTGTTATTAGTTTTAA 538
Query 538 TGAGTTTTCTCATATTATGGCTAAATCCGCTGCTGATTTTCTTGGATTAACCGCTTCTTG 597
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 539 TGAGTTTTCTCATATTATGGCTAAATCGGCTGCTGATTTTCTTGGATTAACCGCTTCTTG 598
Query 598 ATTAATTCTCTGTTTTGTTTTAATTAATCt-tttttttC--CT---GTCA-TGCAACTTG 650
|| || ||||||||||||||| ||| |||||||| || |||| |||||||||
Sbjct 599 AT-----CT--GTTTTGTTTTAATTACTCTCTTTTTTTCTTCTCCTGTCAATGCAACTTG 651
Query 651 TGCAATT-AACAATGTGCTAATCTT 674
||||||| |||||||||||||||||
Sbjct 652 TGCAATTTAACAATGTGCTAATCTT 676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32601961403
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5