BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484327

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25655.1 | Symbols: IDL1 | inflorescence deficient in abscis...   649    0.0  


> AT3G25655.1 | Symbols: IDL1 | inflorescence deficient in abscission 
(IDA)-like 1 | chr3:9337532-9338065 REVERSE LENGTH=534
Length=534

 Score =  649 bits (351),  Expect = 0.0
 Identities = 436/474 (92%), Gaps = 18/474 (4%)
 Strand=Plus/Plus

Query  1    AAACCGCCTTCTTAAAATCCAAAATTTATAAAAACCCTAGCTAGTAGCTAAATTAATG--  58
            ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||  
Sbjct  1    AAACCGCCTTCTTAAAATCCAAAATTTAT-AAAACCCTAGCTAATAGCTAAATTAGTGTC  59

Query  59   T-CTCCTCCTTATTCTTCTTCTTTCTCCGAACATTATATGAATCTTTCTCATAAAACCAT  117
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   TCCTCCTCCTTATTCTTCTTCTTTCTCCGAACATTATATGAATCTTTCTCATAAAACCAT  119

Query  118  GTTTATGACTCTTTATATTGTTTTCCTCTTGGTTTTTGGTTCATACAACGCCACGGCAAG  177
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  120  GTTTATGACTCTTTATATTGTTTTCCTCTTGATTTTTGGTTCATACAACGCCACGGCAAG  179

Query  178  GATGATCGGACCGATTAAGCTTTCTGAAACG-ACACTAGTTCAAACAAGATCAAGACAAG  236
            |||   ||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct  180  GAT---CGGACCGATTAAGCTTTCTGAAACGGAAA-TAGTTCAAACAAGATCAAGACAAG  235

Query  237  AAGAGATCATTGGGGGTTTTAGATTCAAAGGTCGTGTGTTCCATTTATTTTCaaaaaaaG  296
            | ||  ||||||||||||||| ||||||||||||||||||||||| |||||| ||||  |
Sbjct  236  A-GA--TCATTGGGGGTTTTACATTCAAAGGTCGTGTGTTCCATTCATTTTCTAAAAGGG  292

Query  297  TACTTGTACCACCTTCGGGACCTTCCATGAGGCATAATTCTGTGGTGAATAATCTCAAAC  356
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  293  TACTTGTACCACCTTCGGGACCTTCCATGAGACATAATTCTGTGGTGAATAATCTCAAAC  352

Query  357  ACTAACTGAATTTTAT--CTTTTGGTTTACTTTCAATCTCTTAGAATTTGCTTTGAtt-t  413
            ||||||||  |||| |  ||||||||||| |||||||||||||| ||||||||  |   |
Sbjct  353  ACTAACTGTTTTTTTTTTCTTTTGGTTTAATTTCAATCTCTTAGGATTTGCTTCAAAAAT  412

Query  414  tttttGACAATTA--TGAAATTGTATTTAGAAA-GATTCTTAAAGTTGTATTTA  464
            |||||||||||||  ||||||||||||| |||| ||||||||||||||||||||
Sbjct  413  TTTTTGACAATTACATGAAATTGTATTTCGAAAAGATTCTTAAAGTTGTATTTA  466



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22052790533


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5