BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484328
Length=1811
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25660.1 | Symbols: | Amidase family protein | chr3:9339423... 2850 0.0
> AT3G25660.1 | Symbols: | Amidase family protein | chr3:9339423-9342204
REVERSE LENGTH=1991
Length=1991
Score = 2850 bits (1543), Expect = 0.0
Identities = 1703/1779 (96%), Gaps = 15/1779 (1%)
Strand=Plus/Plus
Query 1 TCTCCTTCCTCAAACAGCCGCCGCCGAAACATCTTCTCCGGCGTTACACCGGAGAATTCA 60
||||||||||| |||| | ||||||||||| ||| |||||||||||||||||||||||
Sbjct 7 TCTCCTTCCTCGAACA---GTCGCCGAAACATTTTCGCCGGCGTTACACCGGAGAATTCA 63
Query 61 TCCTTCTTTAACTTATAACCCTAGTACCCAATTTCAATTTTAACCTCAGTATCTCCCCAA 120
||||||||| ||||| || ||| ||||||||||| | ||||| |||| ||||| |||||
Sbjct 64 TCCTTCTTTGTCTTATTACTCTACTACCCAATTTC-AGTTTAAACTCACTATCTTCCCAA 122
Query 121 TTTGATGATTCAGTGATTCAAAATCAAAACTTGAAGCAATGTTATCGACATTGCAACCGC 180
|||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||
Sbjct 123 TTTGATGATTCAGTGATTCAAATTCGAAACTTCAAGCAATGTTATCGACATTGCAACCGC 182
Query 181 CGCGTTCTCTATCTCTCCTCCCTCTCCGCCGATTTCGAAA-CTCCAAAACCATTGTATCT 239
||||||||||||| ||||||||||| ||||| ||| ||| || |||||||| || ||
Sbjct 183 CGCGTTCTCTATCACTCCTCCCTCTACGCCG-GTTCCAAATATCTAAAACCATCGTCTCC 241
Query 240 GCAGCTTCTTC---G---A-CGAC-C-TCCGTTATCTCTCCTCCACAATCTCAGATTCTC 290
||||||||||| | | |||| | |||||||||||||| ||||||||||| ||||||
Sbjct 242 GCAGCTTCTTCGAAGACCATCGACACTTCCGTTATCTCTCCACCACAATCTCAAATTCTC 301
Query 291 ACCACTCGTCGTTCACTCCTCTCCGGCGAAACCACAGCTGTCGAAATCGCAAAATCTTAC 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ACCACTCGTCGTTCACTCCTCTCCGGCGAAACCACAGCTGTCGAAATCGCAAAATCTTAC 361
Query 351 CTTTCTCGTATTCGTCTCACTGAACCTCAGCTCAAATGTTTCCTTCACGTATCGGAGAAT 410
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 362 CTTTCTCGTATCCGTCTCACTGAACCTCAGCTCAAATGCTTCCTTCACGTATCGGAGAAT 421
Query 411 GTTCTCAAAGATGCTCAAGAGATTGATCAACGAATCGCTAAAGGTGAAGAATTGGGTCCT 470
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 422 GTTCTCAAAGATGCTCAAGAGATTGATCAACGAATCGCTAAAGGTGAGGAATTGGGTCCT 481
Query 471 CTCGCCGGAGTTTTGATCGGCGTTAAGGATAATATTTGTACTCAAGGTATGCCTTCTACC 530
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 482 CTCGCCGGAGTTTTGATCGGCGTTAAGGATAATATATGTACTCAAGGTATGCCTTCTACT 541
Query 531 GCCGCTTCGAGAATCTTGGAGCATTATCGTCCTCCGTTCGATGCTACGGCGGTTAAGAAG 590
|| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 542 GCTGCTTCGAGAATCTTAGAGCATTATCGTCCACCGTTCGATGCGACGGCGGTTAAGAAG 601
Query 591 ATTAAAGAGTTGGGTGGGATTGTTGTTGGTAAGACTAATATGGATGAATTTGGAATGGGA 650
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 602 ATTAAAGAGTTGGGTGGGATTGTTGTTGGTAAGACTAATATGGATGAGTTTGGAATGGGA 661
Query 651 AGTACCACTGAAGCTTCTGCTTTTCAGGTAACTGCGAATCCGTGGGATTTGAGTCGTGTA 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AGTACCACTGAAGCTTCTGCTTTTCAGGTAACTGCGAATCCGTGGGATTTGAGTCGTGTA 721
Query 711 CCGGGAGGTTCATCGGGAGGATCAGCAGCAGCTGTTGCAGCAAGACAGTGTGTGGTGTCA 770
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 722 CCGGGAGGTTCATCGGGAGGATCAGCAGCAGCTGTTGCAGCAAGGCAGTGTATGGTGTCA 781
Query 771 CTTGGTAGTGATACTGGTGGAAGTGTGAGACAGCCAGCTTCGTTTTGTGGTGTTGTTGGT 830
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 782 CTTGGTAGTGATACTGGTGGAAGTGTGAGACAGCCAGCTTCGTTTTGTGGTGTTGTAGGT 841
Query 831 TTTAAGCCAACTTATGGGCGTGTTTCTAGGTTTGGACTTATGGCTTATGCATCTTCGTTG 890
||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 842 CTTAAGCCGACTTATGGGCGTGTTTCTAGGTTTGGGCTTATGGCTTATGCGTCTTCGTTG 901
Query 891 GATGTGATTGGGTGTTTTGGTTCAACGGTTGCTGATGCTGGGATGCTTCTTCATGCTATT 950
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 902 GATGTGATTGGGTGTTTTGGGTCTACGGTTGCTGATGCTGGGATGCTTCTTCATGCTATT 961
Query 951 TCTGGGTATGATAGGTTTGACTCCACGAGTAGCAAACAAGATGTGCCTGAGTTCCAATCT 1010
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 962 TCGGGGTATGATAGGTTTGACTCCACGAGTAGCAAACAAGATGTGCCTGAGTTCCAGTCT 1021
Query 1011 CAGTTTCTATCTATGGATCATTTTGAGTCTAAACCATTGAATGGAGTGAAAGTTGGTATA 1070
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 CAGTTTCTATCTGTGGATCATTTTGAGTCTAAACCATTGAATGGAGTGAAAGTTGGTATA 1081
Query 1071 ATTCGCGAGACACTCGAAGACGGTGTTGATTCTGGAGTGAGATCTGCTACTCAGGAAGCT 1130
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 ATTCGCGAGACACTTGAAGACGGTGTTGATTCTGGAGTGAGATCTGCTACTCAGGAAGCT 1141
Query 1131 GCGTCTCACTTAGAAGCATTGGGTTGTGTATTGACAGAGGTCTCCCTTCCTTCATTCTCT 1190
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1142 GCGTCTCACTTAGAAGCATTGGGTTGTATATTGACAGAGGTCTCCCTTCCTTCATTCTCT 1201
Query 1191 CTTGGACTACCAGCTTACTACGTTATTGCCTCATCGGAGTCATCTTCGAATTTATCACGT 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 CTTGGACTACCAGCTTACTACGTTATTGCCTCATCGGAGTCATCTTCGAATTTATCACGT 1261
Query 1251 TATGATGGTGTCAGATATGGAAATCAAGTTGTGGCTGAAGAACTCAATAAGCTGTATGAA 1310
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1262 TATGATGGTGTCAGATATGGTAATCAAGTTATGGCTGAAGAACTCAATAAGCTGTATGAA 1321
Query 1311 TGTTCCCGTGGAGAAGGATTTGGAGGAGAGGTGAAAATGAGAATTTTAATGGGGACATAT 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 TGTTCCCGTGGAGAAGGATTTGGAGGAGAGGTGAAAATGAGAATTTTAATGGGGACATAT 1381
Query 1371 GCACTCTCTGCGGGTTACTACGATGCTTACTACAAGCGAGCTCAACAGGTGAGAACACTA 1430
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1382 GCACTTTCTGCGGGTTACTACGATGCTTACTACAAGCGAGCTCAACAGGTGAGGACACTA 1441
Query 1431 ATTCGAAAAGACTTCAAAGCAGCGTTAGAACAGAACGATATCCTTATTTCTCCGGCAGCT 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 ATTCGAAAAGACTTCAAAGCAGCGTTAGAACAGAACGATATCCTTATTTCTCCGGCAGCT 1501
Query 1491 CCATCTGCTGCATACAAGATTGGTGAAAAGAAAGATGACCCACTGGCAATGTATGCTGGA 1550
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1502 CCATCTGCTGCATACAAGATTGGTGAAAAGAAAGATGATCCACTGGCAATGTATGCTGGA 1561
Query 1551 GACATTATGACGGTCAATGTGAATCTTGCAGGACTTCCTGCAATGGTATTACCGTGTGGA 1610
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1562 GACATTATGACGGTCAATGTGAATCTTGCCGGACTTCCTGCAATGGTATTACCTTGTGGA 1621
Query 1611 TTAGTCGAAGGTGGTCCCTCGGGTCTTCCTGTTGGTCTTCAAATGATCGGTGCAGCGTTT 1670
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1622 TTAGTCGAAGGTGGTCCCTCGGGTCTTCCTGTTGGTCTTCAAATGATCGGAGCAGCGTTT 1681
Query 1671 GATGAGGAGAAATTGCTGAAAGTGGGTCACATATTTGAGCAGACTCTTAAAGGATCAAGC 1730
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1682 GATGAGGAGAAATTGCTGAAAGTGGGTCACATATTTGAGCAGACTCTTAAAGGATCGAGC 1741
Query 1731 TTTGTTCCTCCATTGTTAGCCAATGTACCCTAACCATGT 1769
||||||||||||||||||||||||||| |||||||||||
Sbjct 1742 TTTGTTCCTCCATTGTTAGCCAATGTAGCCTAACCATGT 1780
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1783 TTCAATTCTTTTATAATATAAATGTAGAT 1811
|||||||||||||||||||||||||||||
Sbjct 1854 TTCAATTCTTTTATAATATAAATGTAGAT 1882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89607972825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5