BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484331
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25700.1 | Symbols: | Eukaryotic aspartyl protease family p... 2518 0.0
> AT3G25700.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr3:9358719-9360463 FORWARD LENGTH=1745
Length=1745
Score = 2518 bits (1363), Expect = 0.0
Identities = 1613/1731 (93%), Gaps = 28/1731 (2%)
Strand=Plus/Plus
Query 1 AGAGTTTTATTGCAAAATCCAAAGCTTTATTTTTGATACCCCCC-AAAACAGATATCTTT 59
||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 9 AGAGTTTTATTACAAAAGCCAAAGCTTTATTTTTGATACCCCCCAAAAACAGATATCTTT 68
Query 60 CAGTCTTCACGTTGCAATGCACTCACATTTCGACCACATACTGACAAAAACT-CGTATAC 118
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 69 CAGTCTTCACGTTGCAATATACTCACATTTCGACCACATACTGACAAAAACTCCGTATAT 128
Query 119 ATATACGTATAAAAATACACtcttcttcttcttcttcatctcttaaaacacacagacaca 178
|||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 129 ATATACGTATAAAAATACGGTCTTCTTCTTCTTCTTCATCTCTTACAA-ACACAGACACA 187
Query 179 aacaa-cacaaaacccttctcactctctctcctctctctcaatgtttcctct--tatt-t 234
|| || |||||||||||||||| ||||||||||||||||||||| | || |
Sbjct 188 AA-AATCACAAAACCCTTCTCA---------CTCTCTCTCAATGTTTCCTCTCATCTTCT 237
Query 235 acctctgctctttcctctctctcttcctcctccCACCGGCGAATCTCGCCGCCGTGAGTA 294
|||||| |||||||||||||| ||||||||||| ||| | ||| |||||||||||||||
Sbjct 238 TCCTCTGTTCTTTCCTCTCTCTTTTCCTCCTCCCGCCGTCAAATATCGCCGCCGTGAGTA 297
Query 295 ACGAC-AGAAAGTACCTAAAGCTTCCATTACTACGTAAATCTCCGTTTCCTTCTCCAACA 353
|| || | ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 298 ACCACAACAAA-TACCTAAAGCTTCCACTACTACGCAAATCTCCGTTTCCTTCTCCAACA 356
Query 354 CAAGCTCTAGCTTTAGACAGTCGCCGTCTCCATTTTCTCTCTCTCCGTCGAAAACCCATC 413
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||
Sbjct 357 CAAGCTCTAGCTTTAGACACTCGCCGTCTCCATTTTCTCTCTCTCCGTAGAAAACCAATC 416
Query 414 CCATTCGTCAAATCTCCGGTTATCTCCGGCGCATCTTCCGGGTCGGGTCAATACTTTGTG 473
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 417 CCATTCGTCAAATCTCCGGTGGTCTCCGGCGCAGCTTCCGGGTCGGGTCAATACTTTGTG 476
Query 474 GATCTTCGAATCGGACAACCGCCTCAATCGTTACTTCTAATCGCCGACACAGGAAGTGAT 533
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 477 GATCTTCGTATCGGACAACCGCCTCAATCGTTACTTCTGATCGCCGACACAGGAAGCGAT 536
Query 534 CTCGTTTGGGTAAAATGTTCAGCTTGCCGGAACTGTTCTCATCATTCTCCGGCCACCGTC 593
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CTCGTTTGGGTTAAATGTTCAGCTTGCCGGAACTGTTCTCATCATTCTCCGGCCACCGTC 596
Query 594 TTCTTCCCTCGCCACTCTTCCACATTCTCTCCCGCTCATTGCTACGACCCGGTTTGTCGT 653
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 597 TTCTTCCCTCGCCACTCCTCAACATTCTCTCCCGCCCATTGCTACGACCCGGTTTGTCGT 656
Query 654 TTAGCACCTAAACCGGGTCGGGCTCCGAGATGTAACCATACCCGGATCCATTCCACGTGT 713
|||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 657 TTAGTACCTAAACCGGATCGAGCTCCGATATGTAACCATACCCGGATCCATTCCACGTGT 716
Query 714 CCTTACGAGTATGGTTACGCAGACGGTTCATTAACTTCCGGTTTATTCGCTAGAGAAACG 773
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 717 CATTACGAGTATGGTTACGCTGACGGTTCATTAACTTCCGGTTTATTCGCTAGAGAAACG 776
Query 774 ACGTCGTTGAAGACAAGCTCTGGTAAAGAAGCCAAGTTAAAAAGCGTTGCTTTCGGATGC 833
||||||||||| |||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct 777 ACGTCGTTGAAAACAAGCTCTGGTAAAGAAGCGAGGTTAAAAAGCGTTGCTTTTGGATGC 836
Query 834 GGGTTTCGGATCTCGGGTCAATCCGTATCGGGTACGAGTTTTAATGGAGCCAATGGAGTA 893
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 837 GGGTTTCGGATCTCGGGTCAATCCGTATCAGGTACGAGTTTCAATGGAGCCAATGGAGTA 896
Query 894 ATGGGCTTGGGCCGTGGGCCTATTTCGTTTGCTTCTCAGTTGGGCCGTCGTTTTGGTAAC 953
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 897 ATGGGCTTGGGCCGTGGGCCTATTTCTTTTGCTTCTCAGTTGGGCCGTCGTTTTGGTAAC 956
Query 954 AAGTTTTCTTATTGCTTAATGGATTACACTCTCTCTCCGCCGCCGACGAGTTATCTCATC 1013
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 957 AAGTTTTCTTATTGCTTAATGGATTACACACTCTCTCCGCCGCCGACGAGTTATCTCATC 1016
Query 1014 ATCGG-AGACGGCGGCGACGCCGTTTCGAAGCTTTTCTTCACTCCGTTGCTCACAAATCC 1072
||||| | |||||||||||| | |||| |||||||||||||||||||||||||| |||||
Sbjct 1017 ATCGGTA-ACGGCGGCGACGGCATTTCAAAGCTTTTCTTCACTCCGTTGCTCACGAATCC 1075
Query 1073 GTTATCGCCGACTTTTTACTACGTTAAATTGAATTCTGTCTTCGTTAACGGTGCGAAATT 1132
||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 1076 GTTATCGCCAACTTTTTACTACGTTAAATTAAAATCTGTTTTCGTTAACGGTGCGAAATT 1135
Query 1133 ACGGATCGATCCTTCAATTTGGGAAATCGACGATTCAGGTAACGGCGGAACCGTCGTGGA 1192
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1136 ACGAATCGATCCTTCAATTTGGGAAATCGATGATTCAGGTAACGGCGGAACCGTCGTGGA 1195
Query 1193 CTCCGGCACAACCTTAGCGTTTTTAGCTGATCCGGCGTATCGATTGGTTATCGCCGCCGT 1252
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1196 TTCCGGCACAACCTTAGCGTTTTTAGCTGAACCGGCGTATCGATCGGTTATCGCCGCCGT 1255
Query 1253 GAAACAACGGATGAAGCTCCCTAACGCCGATGAGCTCACTCCGGGATTCGATTTATGCGT 1312
|| || |||| | |||||||||| ||| |||| ||| |||||||| || |||||||||||
Sbjct 1256 GAGACGACGGGTAAAGCTCCCTATCGCTGATGCGCTGACTCCGGGGTTTGATTTATGCGT 1315
Query 1313 TAACGTCTCCGGCGTTTCGAAACCGGAAAAGACATTGCCGAGGTTGAAATTCGAATTCTC 1372
||||||||||||||| ||||||||||||||| ||| |||||||||||||| ||||||||
Sbjct 1316 TAACGTCTCCGGCGTCACGAAACCGGAAAAGATATTACCGAGGTTGAAATTTGAATTCTC 1375
Query 1373 CGGTGGTGCTGTGTTTGTTCCGCCGCCGAGGAATTACTTTATTGAGACGGAGGATCAGAT 1432
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1376 CGGTGGTGCTGTGTTTGTTCCGCCGCCGAGGAATTACTTTATTGAGACGGAGGAGCAGAT 1435
Query 1433 TCAGTGTTTGGCGATTCAATCGGTGGATCCGAAAGTTGGATTCTCGGTGATCGGGAATTT 1492
||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 1436 TCAGTGTCTGGCGATTCAATCGGTGGATCCGAAAGTTGGATTTTCAGTGATTGGGAATTT 1495
Query 1493 GATGCAACAAGGTTTCTTGTTTGAATTCGATAGAGATAGATCACGGTTAGGTTTTTCTCG 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 GATGCAACAAGGTTTCTTGTTTGAATTCGATAGAGATAGATCACGGTTAGGTTTTTCTCG 1555
Query 1553 TCGTGGTTGTGCATCA-CCGTGATGGATTTTTCACCGGAATATTCCGTTTCGATTCGCTT 1611
|||||||||||| || |||||| ||||||| ||| |||||||||| ||||||||||| |
Sbjct 1556 TCGTGGTTGTGC-TCTGCCGTGAAGGATTTTACACTGGAATATTCCTTTTCGATTCGCAT 1614
Query 1612 AAAGATTCTTTTATATTGTTTTTTGGAAGTACGAAATTTGGGTGACGGTTCACTGTTACC 1671
|||||||||||| | || |||| |||||||||||| | ||||||||||||||||||||
Sbjct 1615 AAAGATTCTTTT-T-TT-TTTT--GGAAGTACGAAACGTAGGTGACGGTTCACTGTTACC 1669
Query 1672 GAAAATAGAAATAAAATAATCTTTTTGGAGTTTGTATAATTTCAATTAAAA 1722
||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1670 GAAAATAGAAATAAAATAATCTTTTTGGAGTTTGTATAATTTCGATTAAAA 1720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85140124320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5