BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484331 Length=1722 Score E Sequences producing significant alignments: (Bits) Value AT3G25700.1 | Symbols: | Eukaryotic aspartyl protease family p... 2518 0.0 > AT3G25700.1 | Symbols: | Eukaryotic aspartyl protease family protein | chr3:9358719-9360463 FORWARD LENGTH=1745 Length=1745 Score = 2518 bits (1363), Expect = 0.0 Identities = 1613/1731 (93%), Gaps = 28/1731 (2%) Strand=Plus/Plus Query 1 AGAGTTTTATTGCAAAATCCAAAGCTTTATTTTTGATACCCCCC-AAAACAGATATCTTT 59 ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 9 AGAGTTTTATTACAAAAGCCAAAGCTTTATTTTTGATACCCCCCAAAAACAGATATCTTT 68 Query 60 CAGTCTTCACGTTGCAATGCACTCACATTTCGACCACATACTGACAAAAACT-CGTATAC 118 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 69 CAGTCTTCACGTTGCAATATACTCACATTTCGACCACATACTGACAAAAACTCCGTATAT 128 Query 119 ATATACGTATAAAAATACACtcttcttcttcttcttcatctcttaaaacacacagacaca 178 |||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| Sbjct 129 ATATACGTATAAAAATACGGTCTTCTTCTTCTTCTTCATCTCTTACAA-ACACAGACACA 187 Query 179 aacaa-cacaaaacccttctcactctctctcctctctctcaatgtttcctct--tatt-t 234 || || |||||||||||||||| ||||||||||||||||||||| | || | Sbjct 188 AA-AATCACAAAACCCTTCTCA---------CTCTCTCTCAATGTTTCCTCTCATCTTCT 237 Query 235 acctctgctctttcctctctctcttcctcctccCACCGGCGAATCTCGCCGCCGTGAGTA 294 |||||| |||||||||||||| ||||||||||| ||| | ||| ||||||||||||||| Sbjct 238 TCCTCTGTTCTTTCCTCTCTCTTTTCCTCCTCCCGCCGTCAAATATCGCCGCCGTGAGTA 297 Query 295 ACGAC-AGAAAGTACCTAAAGCTTCCATTACTACGTAAATCTCCGTTTCCTTCTCCAACA 353 || || | ||| ||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 298 ACCACAACAAA-TACCTAAAGCTTCCACTACTACGCAAATCTCCGTTTCCTTCTCCAACA 356 Query 354 CAAGCTCTAGCTTTAGACAGTCGCCGTCTCCATTTTCTCTCTCTCCGTCGAAAACCCATC 413 ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||| Sbjct 357 CAAGCTCTAGCTTTAGACACTCGCCGTCTCCATTTTCTCTCTCTCCGTAGAAAACCAATC 416 Query 414 CCATTCGTCAAATCTCCGGTTATCTCCGGCGCATCTTCCGGGTCGGGTCAATACTTTGTG 473 |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 417 CCATTCGTCAAATCTCCGGTGGTCTCCGGCGCAGCTTCCGGGTCGGGTCAATACTTTGTG 476 Query 474 GATCTTCGAATCGGACAACCGCCTCAATCGTTACTTCTAATCGCCGACACAGGAAGTGAT 533 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 477 GATCTTCGTATCGGACAACCGCCTCAATCGTTACTTCTGATCGCCGACACAGGAAGCGAT 536 Query 534 CTCGTTTGGGTAAAATGTTCAGCTTGCCGGAACTGTTCTCATCATTCTCCGGCCACCGTC 593 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 CTCGTTTGGGTTAAATGTTCAGCTTGCCGGAACTGTTCTCATCATTCTCCGGCCACCGTC 596 Query 594 TTCTTCCCTCGCCACTCTTCCACATTCTCTCCCGCTCATTGCTACGACCCGGTTTGTCGT 653 ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| Sbjct 597 TTCTTCCCTCGCCACTCCTCAACATTCTCTCCCGCCCATTGCTACGACCCGGTTTGTCGT 656 Query 654 TTAGCACCTAAACCGGGTCGGGCTCCGAGATGTAACCATACCCGGATCCATTCCACGTGT 713 |||| ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 657 TTAGTACCTAAACCGGATCGAGCTCCGATATGTAACCATACCCGGATCCATTCCACGTGT 716 Query 714 CCTTACGAGTATGGTTACGCAGACGGTTCATTAACTTCCGGTTTATTCGCTAGAGAAACG 773 | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 717 CATTACGAGTATGGTTACGCTGACGGTTCATTAACTTCCGGTTTATTCGCTAGAGAAACG 776 Query 774 ACGTCGTTGAAGACAAGCTCTGGTAAAGAAGCCAAGTTAAAAAGCGTTGCTTTCGGATGC 833 ||||||||||| |||||||||||||||||||| | |||||||||||||||||| |||||| Sbjct 777 ACGTCGTTGAAAACAAGCTCTGGTAAAGAAGCGAGGTTAAAAAGCGTTGCTTTTGGATGC 836 Query 834 GGGTTTCGGATCTCGGGTCAATCCGTATCGGGTACGAGTTTTAATGGAGCCAATGGAGTA 893 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 837 GGGTTTCGGATCTCGGGTCAATCCGTATCAGGTACGAGTTTCAATGGAGCCAATGGAGTA 896 Query 894 ATGGGCTTGGGCCGTGGGCCTATTTCGTTTGCTTCTCAGTTGGGCCGTCGTTTTGGTAAC 953 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 897 ATGGGCTTGGGCCGTGGGCCTATTTCTTTTGCTTCTCAGTTGGGCCGTCGTTTTGGTAAC 956 Query 954 AAGTTTTCTTATTGCTTAATGGATTACACTCTCTCTCCGCCGCCGACGAGTTATCTCATC 1013 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 957 AAGTTTTCTTATTGCTTAATGGATTACACACTCTCTCCGCCGCCGACGAGTTATCTCATC 1016 Query 1014 ATCGG-AGACGGCGGCGACGCCGTTTCGAAGCTTTTCTTCACTCCGTTGCTCACAAATCC 1072 ||||| | |||||||||||| | |||| |||||||||||||||||||||||||| ||||| Sbjct 1017 ATCGGTA-ACGGCGGCGACGGCATTTCAAAGCTTTTCTTCACTCCGTTGCTCACGAATCC 1075 Query 1073 GTTATCGCCGACTTTTTACTACGTTAAATTGAATTCTGTCTTCGTTAACGGTGCGAAATT 1132 ||||||||| |||||||||||||||||||| || ||||| |||||||||||||||||||| Sbjct 1076 GTTATCGCCAACTTTTTACTACGTTAAATTAAAATCTGTTTTCGTTAACGGTGCGAAATT 1135 Query 1133 ACGGATCGATCCTTCAATTTGGGAAATCGACGATTCAGGTAACGGCGGAACCGTCGTGGA 1192 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1136 ACGAATCGATCCTTCAATTTGGGAAATCGATGATTCAGGTAACGGCGGAACCGTCGTGGA 1195 Query 1193 CTCCGGCACAACCTTAGCGTTTTTAGCTGATCCGGCGTATCGATTGGTTATCGCCGCCGT 1252 ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1196 TTCCGGCACAACCTTAGCGTTTTTAGCTGAACCGGCGTATCGATCGGTTATCGCCGCCGT 1255 Query 1253 GAAACAACGGATGAAGCTCCCTAACGCCGATGAGCTCACTCCGGGATTCGATTTATGCGT 1312 || || |||| | |||||||||| ||| |||| ||| |||||||| || ||||||||||| Sbjct 1256 GAGACGACGGGTAAAGCTCCCTATCGCTGATGCGCTGACTCCGGGGTTTGATTTATGCGT 1315 Query 1313 TAACGTCTCCGGCGTTTCGAAACCGGAAAAGACATTGCCGAGGTTGAAATTCGAATTCTC 1372 ||||||||||||||| ||||||||||||||| ||| |||||||||||||| |||||||| Sbjct 1316 TAACGTCTCCGGCGTCACGAAACCGGAAAAGATATTACCGAGGTTGAAATTTGAATTCTC 1375 Query 1373 CGGTGGTGCTGTGTTTGTTCCGCCGCCGAGGAATTACTTTATTGAGACGGAGGATCAGAT 1432 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1376 CGGTGGTGCTGTGTTTGTTCCGCCGCCGAGGAATTACTTTATTGAGACGGAGGAGCAGAT 1435 Query 1433 TCAGTGTTTGGCGATTCAATCGGTGGATCCGAAAGTTGGATTCTCGGTGATCGGGAATTT 1492 ||||||| |||||||||||||||||||||||||||||||||| || ||||| |||||||| Sbjct 1436 TCAGTGTCTGGCGATTCAATCGGTGGATCCGAAAGTTGGATTTTCAGTGATTGGGAATTT 1495 Query 1493 GATGCAACAAGGTTTCTTGTTTGAATTCGATAGAGATAGATCACGGTTAGGTTTTTCTCG 1552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1496 GATGCAACAAGGTTTCTTGTTTGAATTCGATAGAGATAGATCACGGTTAGGTTTTTCTCG 1555 Query 1553 TCGTGGTTGTGCATCA-CCGTGATGGATTTTTCACCGGAATATTCCGTTTCGATTCGCTT 1611 |||||||||||| || |||||| ||||||| ||| |||||||||| ||||||||||| | Sbjct 1556 TCGTGGTTGTGC-TCTGCCGTGAAGGATTTTACACTGGAATATTCCTTTTCGATTCGCAT 1614 Query 1612 AAAGATTCTTTTATATTGTTTTTTGGAAGTACGAAATTTGGGTGACGGTTCACTGTTACC 1671 |||||||||||| | || |||| |||||||||||| | |||||||||||||||||||| Sbjct 1615 AAAGATTCTTTT-T-TT-TTTT--GGAAGTACGAAACGTAGGTGACGGTTCACTGTTACC 1669 Query 1672 GAAAATAGAAATAAAATAATCTTTTTGGAGTTTGTATAATTTCAATTAAAA 1722 ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1670 GAAAATAGAAATAAAATAATCTTTTTGGAGTTTGTATAATTTCGATTAAAA 1720 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85140124320 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5