BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484332
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25710.1 | Symbols: BHLH32, ATAIG1, TMO5 | basic helix-loop-... 1358 0.0
AT1G68810.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 209 5e-53
> AT3G25710.1 | Symbols: BHLH32, ATAIG1, TMO5 | basic helix-loop-helix
32 | chr3:9369519-9371394 FORWARD LENGTH=1412
Length=1412
Score = 1358 bits (735), Expect = 0.0
Identities = 824/865 (95%), Gaps = 13/865 (2%)
Strand=Plus/Plus
Query 1 GGGATGTTTGTGACCTTTTGTCTCTTCTTCTCT--AATTCTCTTTCTCCTTCCaaaaa-a 57
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||
Sbjct 1 GGGATGTTTGTGACCTTTTGTCTCTTCTTCTCTAAAATTCTCTTTCT-C--CCAAAAACT 57
Query 58 aaaaaaaaaaaaaaacc-aaaaaTGTATGCAATGAAAGAAGAAGACTGTCTTCAAACGTT 116
|||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 58 AAAAAACCAAAAAAACCAAAAAATGTACGCAATGAAAGAAGAAGACTGTCTTCAAACATT 117
Query 117 TCACAACCTACAAGACTATCAAGACCAGTTTCTTCTTCATCACCATCCACAAATCCTCCC 176
||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |||||
Sbjct 118 TCACAACTTACAAGACTATCAAGACCAGTTTCATCTTCATCATCATCCACAAATTCTCCC 177
Query 177 TTGGTCGTCTACATCTTTACCTTCTTTTGACCCGAC-CCATTTCCCATCTAACCCGACCC 235
|||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 178 CTGGTCGTCGACATCTTTACCTTCTTTTGACCC-ACTCCATTTCCCATCTAACCCGACCC 236
Query 236 GTTATTCTGACCCGGTTCACTACTTTAACAGAAGAG---CTTCTTCCTCTTCTTCCTTTG 292
||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||
Sbjct 237 GTTATTCTGACCCGGTTCACTACTTCAACAGAAGAGCTTCTTCTTCCTCTTCTTCTTTTG 296
Query 293 ACTATAACGACGGCTTTGTCTCTCCTCCTCCTTCCATGGATCATCATCAGAACCATCTAA 352
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 297 ACTATAACGACGGTTTTGTCTCTCCTCCTCCTTCCATGGATCATCCTCAGAACCATCTAA 356
Query 353 GGATTTTATCCGAAGCTCTTGGTCCCATCATGCGTCGTGGCTCGTCCTTTGGGTTCGATG 412
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 357 GGATTTTATCCGAAGCTCTTGGACCCATCATGCGTCGTGGCTCGTCCTTTGGGTTCGATG 416
Query 413 GTGAGATCATGGGAAAATTGAGTGCACAAGAAGTCATGGATGCTAAGGCTTTAGCAGCTT 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 417 GTGAGATCATGGGAAAATTGAGTGCACAAGAAGTCATGGATGCTAAGGCTTTAGCTGCTT 476
Query 473 CAAAGAGTCATAGTGAAGCTGAGAGAAGAAGACGAGAGAGAATCAACACTCATCTTGCTA 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CAAAGAGTCATAGTGAAGCTGAGAGAAGAAGACGAGAGAGAATCAACACTCATCTTGCTA 536
Query 533 AGTTGCGTAGTATATTACCAAACACAACCAAAACGGACAAAGCTTCTTTGCTAGCGGAAG 592
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGCTGCGTAGTATATTACCAAACACAACCAAAACGGACAAAGCTTCTTTGCTAGCGGAAG 596
Query 593 TGATCCAACACATGAAGGAGCTAAAACGACAAACATCACAGATCACCGACACGTATCAAG 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGATCCAACACATGAAGGAGCTAAAACGACAAACATCACAGATCACCGACACGTATCAAG 656
Query 653 TCCCAACAGAGTGCGATGACCTGACCGTCGAATCGTCTTACAACGACGAAGAAGGAAACT 712
||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||
Sbjct 657 TCCCAACAGAGTGCGATGATCTGACCGTAGATTCGTCTTACAACGACGAGGAAGGAAACT 716
Query 713 TGGTGATAAGGGCATCCTTTTGCTGCCAGGACAGGACTGACCTCATGCATGACGTCATCA 772
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 717 TGGTGATAAGAGCATCCTTTTGCTGCCAAGACAGGACTGACCTCATGCATGACGTCATCA 776
Query 773 ATGCCTTAAAGTCTCTTCGTCTTCGAACTCTCAAAGCTGAGATCGCAACCGTTGGTGGGT 832
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 777 ATGCCTTAAAGTCTCTTCGTCTTCGAACTCTCAAAGCTGAGATCGCAACCGTAGGTGG-T 835
Query 833 CGAGTCAAGAACATCTTGATCATGA 857
||||||||||||||||| || |||
Sbjct 836 AGAGTCAAGAACATCTTGTTCTTGA 860
Score = 741 bits (401), Expect = 0.0
Identities = 474/508 (93%), Gaps = 9/508 (2%)
Strand=Plus/Plus
Query 850 GATCATGATTCATATCATAGAAACTTCGATGGTGATGACGTGGAGGCTTATGATGAAGAG 909
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 884 GATCATGATTCATATCGTAGAAACTTCGATGGTGATGACGTGGAGGATTATGATGAAGAG 943
Query 910 AGGATGATGAATGATCGTGTGAGTGCGATAGAAGAAGCGTTAAAGGCGGTTATAGAGAAG 969
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 944 AGGATGATGAATAATCGTGTGAGTTCGATAGAAGAAGCGTTAAAGGCGGTTATAGAGAAG 1003
Query 970 TGTGTTCATAATAATGGTGAGAGCAATGATAACAATAACTTGGAGAAATCATCTTCAGGG 1029
|||||||||||||||| ||| || || |||||||||||||||||||||||||||||||||
Sbjct 1004 TGTGTTCATAATAATGATGAAAGTAACGATAACAATAACTTGGAGAAATCATCTTCAGGG 1063
Query 1030 AGTATTAAGAGGCAAAGGACTAGTAAGATGGTGAATCGATGTTATAATTAGTTAATTAAG 1089
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 GGTATTAAGAGGCAAAGGACTAGTAAGATGGTGAATCGATGTTATAATTAGTTAATTAAG 1123
Query 1090 TCAAGTCTTTATTAATTAGGGTTAGTTAATTAGACTTGCAAAATGGGATT-GATTATGGG 1148
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1124 TCAAGTCTTTATTAACTAGGGTTAGTTAATTAGACTTGCAAAATGGGATTTGATTATGGG 1183
Query 1149 TTGGTGATATCCTTATGGtttttatttttttttA-TAATTGGGATTGGGTTTCTTCTTCT 1207
|||||||||| ||| |||| | ||||| | || ||||||||||||||||||||||
Sbjct 1184 TTGGTGATATTAGTATTATTTTCGGTGTTTTT-AGTAGTTGGGATTGGGTTTCTTCTTCT 1242
Query 1208 ATGttttttttAATCTATGAAGAACCCTCTGTTTAGGGTTTTATAGTGATGGGTTTGGTT 1267
|||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1243 ATGTTTTTTT-AATCTATGAAGAACCCTTTGTTTAGGGTTTTATAGTGATGAGTTTGGTT 1301
Query 1268 TATATA-G-T--T-AAGACATTTTATCGTCTTAATTAATATAGGAAATGTAAAGAGCTTG 1322
|||||| | | | ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1302 TATATATGGTAGTTAAGACATTTTATCGTCTTAATTAATATAGGAAATGTATAGAGCTTG 1361
Query 1323 GGTTTGTATTAATTAATCAAGAAGGTTT 1350
|||||||||||||| ||||||||| |||
Sbjct 1362 GGTTTGTATTAATTTATCAAGAAGTTTT 1389
> AT1G68810.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25861123-25863120 FORWARD
LENGTH=1511
Length=1511
Score = 209 bits (113), Expect = 5e-53
Identities = 226/280 (81%), Gaps = 10/280 (4%)
Strand=Plus/Plus
Query 396 GTCC-TTTGGGTT-CGATGGTGAGATCATGGGAAAATTGAGTGCACAAGAAG-TCATGGA 452
|||| |||||||| | | | |||| | | ||||| | ||| ||||||| || |||||||
Sbjct 615 GTCCTTTTGGGTTAC-AAGCTGAG-TTA-GGGAAGA-TGACAGCACAAG-AGATCATGGA 669
Query 453 TGCTAAGGCTTTAGCAGCTTCAAAGAGTCATAGTGAAGCTGAGAGAAGAAGACGAGAGAG 512
||||| ||||| || |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 670 CGCTAAAGCTTTGGCTGCTTCAAAGAGTCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAG 729
Query 513 AATCAACACTCATCTTGCTAAGTTGCGTAGTATATTACCAAACACAACCAAAACGGACAA 572
|||||| | |||||| |||||| | ||||| |||||||| ||||| ||||||||||| ||
Sbjct 730 AATCAATAATCATCTCGCTAAGCTCCGTAGCATATTACCCAACACCACCAAAACGGATAA 789
Query 573 AGCTTCTTTGCTAGCGGAAGTGATCCAACACATGAAGGAGCTAAA-ACGACAAACATCAC 631
||| || || ||||| |||||||||||||| |||| ||| | || | || | || |||
Sbjct 790 AGCGTCGTTACTAGCTGAAGTGATCCAACATGTGAAAGAGTTGAAGA-GAGAGACTTCAG 848
Query 632 AGATCACCGACACGTATCAAGTCCCAACAGAGTGCGATGA 671
|||| | || || ||| |||||||| || |||||||
Sbjct 849 TGATCTCAGAGACAAATCTTGTCCCAACGGAAAGCGATGA 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5