BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484333

Length=292
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25716.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   440    3e-123


> AT3G25716.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:9373118-9373413 
REVERSE LENGTH=296
Length=296

 Score =  440 bits (238),  Expect = 3e-123
 Identities = 276/294 (94%), Gaps = 4/294 (1%)
 Strand=Plus/Plus

Query  1    GAGGAAGAGACAGAAGAAGTTGAACA-GTCAAAAAGACAAGAGGATAGGCTCGATCACGT  59
            |||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct  3    GAGGAAGAGACAAAAGAAGTTGAA-AGGTCAAAAAGACAAGAGGATAGGCTCGATCACGT  61

Query  60   GCGGCGGGCCAATC-CGGCGGTCCTACCACCGTCGCCGTCGTAACCAGAACCATCGTCCT  118
            |||||||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct  62   GCGGCGGGCCAA-CACGGCGGTCCTACCACCGTCGCCGTCGTGACCGGAACCATCGTCCT  120

Query  119  CTTCTCTTGTCACTTTCTCACATCTGGGTCCAAATTTTATTTATTGATGTTCATATCATG  178
            ||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||
Sbjct  121  CTTCTCTTGTCACTTTCTCACCTCTGGGTCCAAATTTTATTTGTTGATGTTCACATCATG  180

Query  179  GAGTTTCCGATATAATGGTTTATTTTTTATTACCCAATTGAACTAAACATTCCCACGTAT  238
            ||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||| 
Sbjct  181  GAGTTTCCGATTTAATGGTTTATTTTACATTACCCAATTGAACTAAACATTCCCACGTAA  240

Query  239  CATTTGTGAACTATTTCTTGTTTCCATTTTTAGTTTTATTTCAAGAACTCAATA  292
            |||||||||||||| |||| |||||||||||||| || ||||||||||||||||
Sbjct  241  CATTTGTGAACTATATCTTATTTCCATTTTTAGTCTTGTTTCAAGAACTCAATA  294



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13471756732


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5