BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484333 Length=292 Score E Sequences producing significant alignments: (Bits) Value AT3G25716.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 440 3e-123 > AT3G25716.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:9373118-9373413 REVERSE LENGTH=296 Length=296 Score = 440 bits (238), Expect = 3e-123 Identities = 276/294 (94%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 1 GAGGAAGAGACAGAAGAAGTTGAACA-GTCAAAAAGACAAGAGGATAGGCTCGATCACGT 59 |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 3 GAGGAAGAGACAAAAGAAGTTGAA-AGGTCAAAAAGACAAGAGGATAGGCTCGATCACGT 61 Query 60 GCGGCGGGCCAATC-CGGCGGTCCTACCACCGTCGCCGTCGTAACCAGAACCATCGTCCT 118 |||||||||||| | ||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 62 GCGGCGGGCCAA-CACGGCGGTCCTACCACCGTCGCCGTCGTGACCGGAACCATCGTCCT 120 Query 119 CTTCTCTTGTCACTTTCTCACATCTGGGTCCAAATTTTATTTATTGATGTTCATATCATG 178 ||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||| Sbjct 121 CTTCTCTTGTCACTTTCTCACCTCTGGGTCCAAATTTTATTTGTTGATGTTCACATCATG 180 Query 179 GAGTTTCCGATATAATGGTTTATTTTTTATTACCCAATTGAACTAAACATTCCCACGTAT 238 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 181 GAGTTTCCGATTTAATGGTTTATTTTACATTACCCAATTGAACTAAACATTCCCACGTAA 240 Query 239 CATTTGTGAACTATTTCTTGTTTCCATTTTTAGTTTTATTTCAAGAACTCAATA 292 |||||||||||||| |||| |||||||||||||| || |||||||||||||||| Sbjct 241 CATTTGTGAACTATATCTTATTTCCATTTTTAGTCTTGTTTCAAGAACTCAATA 294 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13471756732 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5