BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484334

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25717.1 | Symbols: RTFL16, DVL6 | ROTUNDIFOLIA like 16 | ch...   654    0.0  


> AT3G25717.1 | Symbols: RTFL16, DVL6 | ROTUNDIFOLIA like 16 | 
chr3:9375102-9375671 REVERSE LENGTH=570
Length=570

 Score =  654 bits (354),  Expect = 0.0
 Identities = 434/471 (92%), Gaps = 11/471 (2%)
 Strand=Plus/Plus

Query  1    TATCTTCTTCGCAACTAAAACTCAAAACAATCAAAGATAAACCCTAAAAGAAAATCTCTA  60
            ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  10   TATCTACTTCGCAACTAAAACTCAAAACAATCAAAGAAAAACCCTAAAAGAAAATCTCTA  69

Query  61   TATCGAAGATGGGAGTTTTGAAGAGAAGAGTATCGAGTAGCAGAGGACTTGGTGGTGTTC  120
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  70   TATCGAAGATGGGAGTTTTGAAGAGAAGAGTATCGAGCAGCAGAGGACTTGGTGGTGTTC  129

Query  121  TTAGAGAGCAAAGAGCTAAGCTTTACATCATCAAACGATGTGTTGTGATGCTCCTATGTT  180
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  130  TTAGAGAGCAAAGAGCTAAGCTTTACATCATCAAACGATGTGTTGTTATGCTCCTATGTT  189

Query  181  GGCAAGATTAATCTTGGTTGATTCAAGTGGTGATACTTTGAAGCTTAACCGGATCAAACC  240
            ||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct  190  GGCAAGATTGATCTTGGTTGATTCAAGTGTTGATACTTTGATGCTTAACCGGATCAAAGC  249

Query  241  GATGATTGCAA---G-AATA---TACGAAGGAGGGAACCGGTTTGGGTTTTGCTTGCAAG  293
            |||||||||||   | || |   ||||||||||| |||||| ||||||||||||||||||
Sbjct  250  GATGATTGCAACTTGCAAGAAGATACGAAGGAGGAAACCGGCTTGGGTTTTGCTTGCAAG  309

Query  294  AAGATATGAAGGAAAAAACCGGTTTGGGTTTTGCAAGAAGATAGTCAATTTTAGGGGGGT  353
            | |||||||| ||  |||| |||||| ||||||||||||||||| ||||  |||| || |
Sbjct  310  AGGATATGAAAGAGGAAACTGGTTTGAGTTTTGCAAGAAGATAGACAATCGTAGGAGGAT  369

Query  354  GAAAGTTGAACACTTTCGATATGGATATATGTTTTTAGTTTTTGGAA-AGTATATTTGTA  412
            | ||||||||||||||||||||||||||||||||  ||||||||||  | ||||| ||||
Sbjct  370  GGAAGTTGAACACTTTCGATATGGATATATGTTT--AGTTTTTGGAGGA-TATATATGTA  426

Query  413  AATATACGAATAAAAGTTTGGGATAAATTTTGTAATGGCTTTTGCCTTATA  463
            |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  427  AATATACGAATAAAAGTTTGGGATGAATTTTGTAATGGCTTTTGCCTTATA  477



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25016605206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5