BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484335
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25730.1 | Symbols: EDF3 | ethylene response DNA binding fac... 1539 0.0
AT1G13260.1 | Symbols: RAV1, EDF4 | related to ABI3/VP1 1 | chr... 667 0.0
AT1G25560.1 | Symbols: TEM1, EDF1 | AP2/B3 transcription factor... 285 7e-76
> AT3G25730.1 | Symbols: EDF3 | ethylene response DNA binding factor
3 | chr3:9396420-9397747 FORWARD LENGTH=1328
Length=1328
Score = 1539 bits (833), Expect = 0.0
Identities = 1019/1103 (92%), Gaps = 36/1103 (3%)
Strand=Plus/Plus
Query 1 TTCACATTACTAATCTCTCAAGATTTCACAATTTTCTTGTGATTTTCTCTCAGTTTCTTC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 TTCACATTACTAATCTCTCAAGATTTCACAATTTTCTTGTGATTTTCTCTCAGTTTCTTA 71
Query 61 TTTCGTTGCATAACATGGATGCCATGAGTAGCGTAGACGAGAGCTCCACAACTACAGATT 120
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 72 TTTCGTTTCATAACATGGATGCCATGAGTAGCGTAGACGAGAGCTCTACAACTACAGATT 131
Query 121 CGGTTCCGGCGAGAAATTTATCGTCTCCGGCGAGTTTACTATACAGAATGGGAAGCGGAA 180
| ||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct 132 CCATTCCGGCGAGAAAGTCATCGTCTCCGGCGAGTTTACTATATAGAATGGGAAGCGGAA 191
Query 181 CAAGCGTGGTTCTTGATTCAGAGAACGGTGTCG-A---G--G-C--A---GAATCAAGAA 228
|||||||||| |||||||||||||||||||||| | | | | | ||||||||||
Sbjct 192 CAAGCGTGGTACTTGATTCAGAGAACGGTGTCGAAGTCGAAGTCGAAGCCGAATCAAGAA 251
Query 229 AGCTTCCTTCTTCAAGATTCAAAGGTGTTGTTCCTCAACCAAATGGAAGATGGGGAGCTC 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 AGCTTCCTTCTTCAAGATTCAAAGGTGTTGTTCCTCAACCAAATGGAAGATGGGGAGCTC 311
Query 289 AGATTTACGAGAAACACCAACGCGTATGGCTTGGTACTTTCAACGAAGAAGACGAAGCAG 348
|||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 312 AGATTTACGAGAAACATCAACGCGTGTGGCTTGGTACTTTCAACGAGGAAGACGAAGCAG 371
Query 349 CTCGTGCTTACGACGTCGCGGCTCACCGTTTCCGTGGCCGTGACGCCGTTACTAATTTCA 408
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 372 CTCGTGCTTACGACGTCGCGGCTCACCGTTTCCGTGGCCGCGATGCCGTTACTAATTTCA 431
Query 409 AAGAAACGACGTTCGACGATGACGAGGTTGATTTCTTAAACGCACATTCGAAATCAGAGA 468
|||| ||||||||||| || | |||||||| ||||||||||| ||||||||||||||||
Sbjct 432 AAGACACGACGTTCGAAGA--A-GAGGTTGAGTTCTTAAACGCGCATTCGAAATCAGAGA 488
Query 469 TCGTAGATATGTTGAGAAAACACACTTACAAAGAAGAGTTAGAGCAAAGGAAACGTAACC 528
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 489 TCGTAGATATGTTGAGAAAACACACTTACAAAGAAGAGTTAGACCAAAGGAAACGTAACC 548
Query 529 GTAACGGTAACGGAAACA-AGACGACGGAGTTTGGTTCCG-TTACCG-TGGCGGTTATAA 585
|| ||||||||||||| | ||||||||| ||||| || | || | | ||| |||||| |
Sbjct 549 GTGACGGTAACGGAAA-AGAGACGACGGCGTTTGCTTTGGCTT-C-GATGGTGGTTATGA 605
Query 586 CGGGGTTTAAAACGTCGGAGTTACTGTTTGAGAAAACGGTAACGCCAAGTGACGTCGGGA 645
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 CGGGGTTTAAAACGGCGGAGTTACTGTTTGAGAAAACGGTAACGCCAAGTGACGTCGGGA 665
Query 646 AACTAAACCGTTTAGTTATACCAAAACACCAAGCGGAGAAACATTTTCCGTTACCGTTAG 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 AACTAAACCGTTTAGTTATACCAAAACACCAAGCGGAGAAACATTTTCCGTTACCGTTAG 725
Query 706 GTAATAATAACGTCTCCGTTAAAGGTATACTGTTGAATTTCGAAGACGTTAACGGAAAAG 765
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 726 GTAATAATAACGTCTCCGTTAAAGGTATGCTGTTGAATTTCGAAGACGTTAACGGGAAAG 785
Query 766 TGTGGAGGTTCCGTTACTCTTACTGGAATAGTAGTCAAAGTTATGTGTTGACCAAAGGTT 825
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 786 TGTGGAGGTTCCGTTACTCTTATTGGAATAGTAGTCAAAGTTATGTGTTGACCAAAGGTT 845
Query 826 GGAGTAGATTTGTTAAAGAGAAGAGACTTTGTGCCGGTGATTTGATCAGTTTTAAAAGAT 885
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 846 GGAGTAGATTCGTTAAAGAGAAGAGACTTTGTGCTGGTGATTTGATCAGTTTTAAAAGAT 905
Query 886 CTAACGGTCAGGATCAAAAGTTGTTTATTGGTTGGAAATCGAAATTCGGATCCGGGTCGG 945
| |||| ||| |||||||| || ||||| || ||||||||||||| | | |||| ||
Sbjct 906 CCAACGATCAAGATCAAAAATTCTTTATCGGGTGGAAATCGAAAT-C----C-GGGTTGG 959
Query 946 ATCAAGAAACAGGTCGGGTTGTGAGATTGTTTGGGGTTGACATTTCTTTAAACGACGTCG 1005
||| ||| || ||||||||| ||||||||||||||||||| ||||||||||||| |||||
Sbjct 960 ATCTAGAGACGGGTCGGGTTATGAGATTGTTTGGGGTTGATATTTCTTTAAACGCCGTCG 1019
Query 1006 TTGTAGTGAAGGAAGCAACGGAGGTGTT--T-TCGTCGTTACGGTGTAATAAGAAGAAGC 1062
|||||||||||||| ||||||||||||| | ||||||||| ||||||| |||| |
Sbjct 1020 TTGTAGTGAAGGAAACAACGGAGGTGTTAATGTCGTCGTTAAGGTGTAA---GAAG---C 1073
Query 1063 AACGAGTTTTGTAATAACAAttt 1085
|||||||||||||||||||||||
Sbjct 1074 AACGAGTTTTGTAATAACAATTT 1096
> AT1G13260.1 | Symbols: RAV1, EDF4 | related to ABI3/VP1 1 | chr1:4542168-4543742
FORWARD LENGTH=1575
Length=1575
Score = 667 bits (361), Expect = 0.0
Identities = 692/849 (82%), Gaps = 34/849 (4%)
Strand=Plus/Plus
Query 160 TATACAGAATGGGAAGCGGAACAAGCGTGGTTCTT-GATTCAGAGAACGGTGTCGAGGCA 218
||||||| |||||||||||| ||||||| | | || |||||||||||||| || || ||
Sbjct 316 TATACAGGATGGGAAGCGGATCAAGCGTTG-TGTTAGATTCAGAGAACGGCGTAGAAGCT 374
Query 219 GAATCAAGAAAGCTTCCTTCTTCAAGATTCAAAGGTGTTGTTCCTCAACCAAATGGAAGA 278
||||| || |||||||| || |||| || ||||||||| || || |||||||| ||||||
Sbjct 375 GAATCTAGGAAGCTTCCGTCGTCAAAATACAAAGGTGTGGTGCCACAACCAAACGGAAGA 434
Query 279 TGGGGAGCTCAGATTTACGAGAAACACCAACGCGTATGGCTTGGTACTTTCAACGAAGAA 338
||||||||||||||||||||||||||||| ||||| ||||| || || ||||||||||||
Sbjct 435 TGGGGAGCTCAGATTTACGAGAAACACCAGCGCGTGTGGCTCGGGACATTCAACGAAGAA 494
Query 339 GACGAAGCAGCTCGTGCTTACGACGTCGCGGCTCACCGTTTCCGTGGCCGTGACGCCGTT 398
|||||||| |||||||| ||||||||||||| |||| | |||||| |||||||||||||
Sbjct 495 GACGAAGCCGCTCGTGCCTACGACGTCGCGGTTCACAGGTTCCGTCGCCGTGACGCCGTC 554
Query 399 ACTAATTTCAAAGAAACGACGTTCGACGATGACGAGGTTGATTTCTTAAACGCACATTCG 458
|| ||||||||||| || | | ||||| |||||||| |||||||| || | ||||||
Sbjct 555 ACAAATTTCAAAGACGTGAAGATGGACGAAGACGAGGTCGATTTCTTGAATTCTCATTCG 614
Query 459 AAATCAGAGATCGTAGATATGTTGAGAAAACACACTTACAAAGAAGAGTTAGAGCAAAGG 518
||||| |||||||| ||||||||||| ||||| ||||| || |||||||||||||| ||
Sbjct 615 AAATCTGAGATCGTTGATATGTTGAGGAAACATACTTATAACGAAGAGTTAGAGCAGAGT 674
Query 519 AAACGTAACCGTAACGGTAACGGAAACAAGAC--G-ACGGAGTT----T-GG--TTCCGT 568
||||| ||||| ||||||||||||| ||| | ||| ||| | || || ||
Sbjct 675 AAACGGCGTCGTAATGGTAACGGAAACATGACTAGGACGTTGTTAACGTCGGGGTTGAGT 734
Query 569 TACCG-TGGCGGTTATA--ACGGGGTTTAAAACGTCGGAGTTACTGTTTGAGAAAACGGT 625
| | ||| | || || |||||||||| | || ||||| ||||||||||||| ||||
Sbjct 735 AAT-GATGGTGTTTCTACGACGGGGTTTAGATCGGCGGAGGCACTGTTTGAGAAAGCGGT 793
Query 626 AACGCCAAGTGACGTCGGGAAACTAAACCGTTTAGTTATACCAAAACACCAAGCGGAGAA 685
||||||||| ||||| ||||| ||||||||||| |||||||| ||||| || || |||||
Sbjct 794 AACGCCAAGCGACGTTGGGAAGCTAAACCGTTTGGTTATACCGAAACATCACGCAGAGAA 853
Query 686 ACATTTTCCGTTACCGTTAGGTAATAATAACGTCTCCGTTAAAGGTA-TACTGTTGAA-T 743
||||||||||||||||| | |||| ||| ||||| ||||| | | ||||||| |
Sbjct 854 ACATTTTCCGTTACCGTCAAGTAA------CGTTTCCGTGAAAGG-AGTGTTGTTGAACT 906
Query 744 TTCGAAGACGTTAACGGAAAAGTGTGGAGGTTCCGTTACTCTTACTGGAATAGTAGTCAA 803
|| || ||||||||||| ||||||||||||||||||||||| || ||||| ||||||||
Sbjct 907 TT-GAGGACGTTAACGGGAAAGTGTGGAGGTTCCGTTACTCGTATTGGAACAGTAGTCAG 965
Query 804 AGTTATGTGTTGACCAAAGGTTGGAGTAGATTTGTTAAAGAGAAGAGA-CTTTGTGCCGG 862
|||||||| ||||| ||||||||||| || || ||||| ||||||| | || |||| ||
Sbjct 966 AGTTATGTTTTGACTAAAGGTTGGAGCAGGTTCGTTAAGGAGAAGA-ATCTACGTGCTGG 1024
Query 863 TGATTTGATCAGTTTTAAAAGATCTAACGGTCAGGATCAAAAGTTGTTTATTGGTTGGAA 922
||| || | ||||| | ||||||||||||||||||||| |||||| ||||| |||||
Sbjct 1025 TGACGTGGTTAGTTTCAGTAGATCTAACGGTCAGGATCAACAGTTGTACATTGGGTGGAA 1084
Query 923 ATCGAAATTCGGATCCGGGTCGGATCAAGAAACAGGTCGGGTTGTGAGATTGTTTGGGGT 982
|||| | ||||||||| ||| ||| | ||||||||| |||||||||| || ||
Sbjct 1085 GTCGA-----G-ATCCGGGTCAGATTTAGATGCGGGTCGGGTTTTGAGATTGTTCGGAGT 1138
Query 983 TGACATTTC 991
| |||||||
Sbjct 1139 TAACATTTC 1147
> AT1G25560.1 | Symbols: TEM1, EDF1 | AP2/B3 transcription factor
family protein | chr1:8981677-8983041 REVERSE LENGTH=1365
Length=1365
Score = 285 bits (154), Expect = 7e-76
Identities = 561/748 (75%), Gaps = 65/748 (9%)
Strand=Plus/Plus
Query 162 TACAGAATGGGAA---GCGGAA-CAAGCGTGGTTCTT-GATTCAGAGAACGGTGTCGAGG 216
||||||||||||| |||||| | ||||| ||| || |||||||||||||| ||||||
Sbjct 192 TACAGAATGGGAAGCGGCGGAAGC-AGCGTCGTT-TTGGATTCAGAGAACGGCGTCGAGA 249
Query 217 CAGAATCAAGAAAGCTTCCTTCTTC-AAGAT-TCAAAGGTGTTGTTCCTCAACCAAATGG 274
| || ||| | ||||||||||| || || || | ||||| ||||| ||||| || || ||
Sbjct 250 CCGAGTCACGTAAGCTTCCTTCGTCGAA-ATAT-AAAGGCGTTGTGCCTCAGCCTAACGG 307
Query 275 AAGATGGGGAGCTCAGATTTACGAGAAACACCAACGCGTATGGCTTGGTACTTTCAACGA 334
||||||||||||||||||||||||||| || || || || ||||| ||||||||||||||
Sbjct 308 AAGATGGGGAGCTCAGATTTACGAGAAGCATCAGCGAGTTTGGCTCGGTACTTTCAACGA 367
Query 335 AGAAGACGAAGCAGC-TCGTGCTTACGACGTCGCGGCTCACC-GTTTCCGTGGCCGTGAC 392
||||| ||||| || || | |||||||| |||| | | | | ||||| ||||| |||
Sbjct 368 GGAAGAAGAAGCTGCGTCTT-CTTACGACATCGCCG-TGAGGAGATTCCGCGGCCGCGAC 425
Query 393 GCCGTTACTAATTTCAAAGA--AACGACGTTCGA--CGATGACGAGGTTGA-TTT-CTTA 446
||||| ||||| |||||| || | | | || ||| | ||| | | ||| |||
Sbjct 426 GCCGTCACTAACTTCAAATCTCAA-GTTGATGGAAACGACGCCGAA-TCGGCTTTTCTTG 483
Query 447 AACGCACATTCGAAATCAGAGATCGTAGATATGTTGAGAAAACACACTTACAAAGAAGAG 506
| ||| ||||| ||| | |||||||| ||||||||||| |||||||||||| || |||
Sbjct 484 A-CGCTCATTCTAAAGCTGAGATCGTGGATATGTTGAGGAAACACACTTACGCCGATGAG 542
Query 507 TTAGAGCAAAGGAAACGTAACC--GT-AACGGTAACGGAAACAAGACGAC-GGAGTTTGG 562
|| ||||| || | ||| || || ||||| ||||||| | | | | || ||| ||
Sbjct 543 TTTGAGCAGAGTAGACGGAAGTTTGTTAACGGCGACGGAAA-ACG-CT-CTGG-GTT-GG 597
Query 563 TTCCGTT-ACCGTGGCGGTTATAACGGGGTTTAAA-A-CGTCG-GAG-TTACTGTTTGAG 617
|| || || ||| | ||| |||| | | || || ||| || |||| |||
Sbjct 598 AGACGGCGAC-GTA-CGGAAACGACGCTGTTTTGAGAGCG-CGTGAGGTTT-TGTTCGAG 653
Query 618 AAAACGGTAACGCCAAGTGACGTCGGGAAACTAAACCGTTTAGTTATACCAAAACACCAA 677
|| || || ||||| || ||||||||||| || ||||||||||| ||||| ||||| ||
Sbjct 654 AAGACTGTTACGCCGAGCGACGTCGGGAAGCTGAACCGTTTAGTGATACCGAAACAACAC 713
Query 678 GCGGAGAAACATTTTCCGTTACCGT---T-A-G--GTA-ATA---AT-AA-C-GTCTCCG 723
|||||||| ||||||||||||||| | | | | || || || | |||||||
Sbjct 714 GCGGAGAAGCATTTTCCGTTACCGGCGATGACGACGGCGATGGGGATGAATCCGTCTCCG 773
Query 724 TT-AAAGGTATACTG-TTGAATTTCGAAGAC-GTTAAC-GGAAAAGTGTGGAGGTTCCGT 779
||||| | || || || || ||||| | ||| || ||||||||| ||||||||
Sbjct 774 ACGAAAGGCGTTTTGATT-AACTTGGAAGATAG--AACAGGGAAAGTGTGGCGGTTCCGT 830
Query 780 TACTCTTACTGGAATAGTAGTCAAAGTTATGTGTTGACCAAAGGTTGGAGTAGATTTGTT 839
||| ||||||||| || ||||||||||| ||||||||||| || ||||| | || |||
Sbjct 831 TACAGTTACTGGAACAGCAGTCAAAGTTACGTGTTGACCAAGGGCTGGAGCCGGTTCGTT 890
Query 840 AAAGAGAAGAGA-CTTTGTGCCGGTGAT 866
|||||||||| | ||| | |||||||||
Sbjct 891 AAAGAGAAGA-ATCTTCGAGCCGGTGAT 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57730626750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5