BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484337
Length=1021
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25750.1 | Symbols: | F-box family protein with a domain of... 1424 0.0
AT2G26160.1 | Symbols: | F-box family protein with a domain of... 388 4e-107
AT1G44080.1 | Symbols: | F-box family protein with a domain of... 276 3e-73
> AT3G25750.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr3:9400955-9402088 FORWARD
LENGTH=1047
Length=1047
Score = 1424 bits (771), Expect = 0.0
Identities = 958/1044 (92%), Gaps = 30/1044 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAAAACTGAGTGGTCTGATTTACCTGAAGAACTCCTAGATTTAATTGCAAACCGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAAACTGAGTGGTCTGATTTACCTGAAGAACTCCTAGATTTAATTGCAAACCGT 60
Query 61 TATTCCTCCAACATCGACGTCCTCCGTATCCGTAGCATCTGTAAATACTGGCGTTCTACG 120
|||||||||||||| |||||||| ||||||||||||| |||||||| |||||||||| ||
Sbjct 61 TATTCCTCCAACATTGACGTCCTACGTATCCGTAGCACCTGTAAATCCTGGCGTTCTGCG 120
Query 121 GTTACGATGTCTAAAGAGCGTCTTCAGTTTCGCTTT-AACCGCTACCTTCCTACCTCCAA 179
||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 121 GTTGCGATGTCTAAAGAGCGTCTTCAGTTTCGCTTTGAA-CGCTACCTTCCTACCTCCAA 179
Query 180 TAAGAAGATAAAGGCTCATCTCTTTCCCACCACTTTCTTCCGTATAACTCTCCCTTCTTC 239
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 180 CAAGAAGATAAAGGCTCATCTCTCTCCCACCACTTTCTTCCGTATAACTCTCCCTTCTTC 239
Query 240 ATGTCCTAACAATGGATGGCTAATAAGAACTAGCCAAGCCTCC-AAA--TATCGTAAGAT 296
|||||||||||| ||||||||| |||||||||| ||||||||| ||| |||||||||||
Sbjct 240 ATGTCCTAACAAAGGATGGCTAGTAAGAACTAGACAAGCCTCCAAAATGTATCGTAAGAT 299
Query 297 TACTCTCTTGAGTCCTATCTCTGGCGAGCTCATCATCCATTCCCACCAAACCCTAGACCT 356
|||||||||| ||||| |||||||||||| ||||| || |||||||||||||||||||||
Sbjct 300 TACTCTCTTGTGTCCTCTCTCTGGCGAGCGCATCACCCGTTCCCACCAAACCCTAGACCT 359
Query 357 TTTGAAGGTTGGCGTTTCAGAGATTCGCCAATCTTACAAGATT-AATATATTTGATGGAT 415
||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||
Sbjct 360 TTTGAAGGTTGGCGTTTCAGAGATTCGCCAATCTTACGAGATTCAA-ATATTCGATGGAT 418
Query 416 TGAAGGACGAAAAGATACC-----A-TCATATATATTCTCTAATTATGA-CATGAAGTA- 467
||||||||||||||||||| | ||| | ||||||||||||||| | || ||| ||
Sbjct 419 TGAAGGACGAAAAGATACCATTAGATTCAGAGATATTCTCTAATTAT-ATCAAGAA-TAG 476
Query 468 TGACAAGACACCATCAGACGGAAGTAGAAGTTGGACAAAAATTAATAACCAAGTCGAAGA 527
|||||| | ||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 477 TGACAAAATACCATCAGAAGGAAGTAGAAGTTGGACAAAAATTAAAAACCAAGTCGAAGA 536
Query 528 TTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAGCAAC 587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAGCAAT 596
Query 588 TTGGTGGATTAGTTTATCACAGCTTAGTGCTGTTCAACAGACACCTTCAACTCCATTGGA 647
|||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||
Sbjct 597 TTGGTGGATTAGTTTATCACAGCTTACCATTGTTCAACAGACATCTTCAACTCCGTTGGA 656
Query 648 CTACTATAATTATGATAGTTGCGAAGACACGAGGCTCGTGGAATATTGTGGAGATCTATG 707
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 657 CTACTATAAATATGATAGTTGCCAAGACACGAGGCTCGTGGAATATTGTGGAGATCTATG 716
Query 708 CATTGTTCATCAACTTAGCGTTACTA-AACATTATATC-AGGAGGACCGTTGGTTTTAAG 765
|||||||||| |||||||| | ||| || || ||||| || ||||||||||||||||||
Sbjct 717 CATTGTTCATGAACTTAGCATAACTCGAA-ATCATATCCAG-AGGACCGTTGGTTTTAAG 774
Query 766 GTTTATAAGATGGACGAGGATTTGGCAAAATGGGTTGAGGTTAGTTCCTTGGGAGACAAG 825
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 775 GTTTATAAGATGGACGAGGATTTGGCAAAATGGGTTGAGGTTAGTTGCTTGGGAGACAAC 834
Query 826 GCACTCATTGTTGCTTGGGACAGTTGTTTTACGGTCGTAGCCTCTGAGTACCATGGATGT 885
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 835 ACACTCATTGTTGCTTGCAACAGTTGTTTTACTGTCGTAGCCTCTGAGTACCATGGATGT 894
Query 886 TTGAAGAATGCTATCTACTTCT-TT-T-ATGAT-T-ATG--G-C-GAAAATCTTAAAGTG 936
||||||||| |||| ||||||| || | ||||| | | | | | |||||| | ||||||
Sbjct 895 TTGAAGAATTCTATTTACTTCTCTTATTATGATGTCAAGAAGGCCGAAAATATAAAAGTG 954
Query 937 TTCAAGCTTGATGATGGTAGTATCATCGAGATGACTGATATTTCTTCTCAGAGTTGTTTT 996
||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 955 TTCAAGCTTGATGATGGTAGTATCACCCAGAGGACTGATATTTCTTCTCAGAGTTGTTTT 1014
Query 997 CACATGTTCTCACTTTCCTTTCTC 1020
||||||||||| ||| |||| |||
Sbjct 1015 CACATGTTCTCTCTTCCCTTCCTC 1038
> AT2G26160.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr2:11137978-11139451 REVERSE
LENGTH=1474
Length=1474
Score = 388 bits (210), Expect = 4e-107
Identities = 362/432 (84%), Gaps = 24/432 (6%)
Strand=Plus/Plus
Query 490 AGTAGAAGT-TGGACAAAAATTAATAACCAAGTCGAAGATTTCTCGGACATTATACTTCA 548
||||||| | ||||||||||| || |||||||| |||||||||| |||||||||||||||
Sbjct 532 AGTAGAA-TATGGACAAAAATCAAAAACCAAGTTGAAGATTTCTTGGACATTATACTTCA 590
Query 549 CATGGGACGTA-TCTATGCCGTGGACTTAAAAGGAGCAACTTGGTGGATTAGTTTATCAC 607
| |||| | |||||||| | ||| ||| || |||| ||||||||||||||||||||
Sbjct 591 TAAAGGAC-AAGTCTATGCCTTAGACCTAACCGGCGCAATTTGGTGGATTAGTTTATCAC 649
Query 608 AGCTTAGTGCT-GTTCAACAGACACCTTCAACTCCATTGGACTACTA-TAATTATGATAG 665
||| || || ||||| |||||||||| |||| |||||||| | | ||||||||
Sbjct 650 CGCTCAG-CCTCCTTCAATTCACACCTTCAATTCCAATGGACTACGACGGA-TATGATAG 707
Query 666 TTGCGAAGACACGAGGCTCGTGGAATATTGTGGAGATCTATGCATTGTTCATCAACTTAG 725
|||| | ||| ||| ||||| || ||||||||||||||||||||| ||||||||||| |
Sbjct 708 TTGC--A-ACAAGAGACTCGTTGAGTATTGTGGAGATCTATGCATTATTCATCAACTTCG 764
Query 726 CGTT-ACTAAA-CATTATAT-C--A-G-G----AGGACCGTTGGTTTTAAGGTTTATAAG 774
| || | ||| | |||||| | | | | ||||| |||||||||||||||||||||
Sbjct 765 C-TTAAAGAAAGC-TTATATCCGAAGGAGTCAAAGGACAGTTGGTTTTAAGGTTTATAAG 822
Query 775 ATGGACGAGGATTTGGCAAAATGGGTTGAGGTTAGTTCCTTGGGAGACAAGGCACTCATT 834
||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 823 ATGGACGAGTATGTGGCAAAATGGGTTGAGGTTAGGTCCTTGGGAGACAAGGCACTCATT 882
Query 835 GTTGCTTGGGACAGTTGTTTTACGGTCGTAGCCTCTGAGTACCATGGATGTTTGAAGAAT 894
|| ||| |||||||||||||||| || |||||||| |||||||||||||||||||| |||
Sbjct 883 GTGGCTAGGGACAGTTGTTTTACTGTTGTAGCCTCCGAGTACCATGGATGTTTGAACAAT 942
Query 895 GCTATCTACTTC 906
|||||||||||
Sbjct 943 TCTATCTACTTC 954
> AT1G44080.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr1:16753944-16755670 REVERSE
LENGTH=1044
Length=1044
Score = 276 bits (149), Expect = 3e-73
Identities = 320/400 (80%), Gaps = 22/400 (6%)
Strand=Plus/Plus
Query 524 AAGATTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAG 583
||| ||| | ||| ||||||||||||| ||| |||||||| | ||||||| |||||
Sbjct 524 AAGGTTTTTTGGATATTATACTTCACAAAGGAAAAATCTATGCATTAGACTTAACAGGAG 583
Query 584 CAACTTGGTGGATTAGTTTATCACAGCTTAGTGC-TGT-TCAACA-GACACCTTCAACTC 640
||| |||||||||||||||||| | || | || | | |||| | | |||||||||||
Sbjct 584 CAATTTGGTGGATTAGTTTATCTGAACTCA--GCATATATCAATACG-GACCTTCAACTC 640
Query 641 CATTGGACTACTA-TAATTATGATAGTTGCGAAGACACGAGGCTCGTGGAATATTGTGGA 699
|| |||||| ||| || | ||||| |||| |||| | ||| |||||||| |||||||||
Sbjct 641 CAGTGGACTTCTACGAAAT-TGATAATTGCAAAGAAAAGAGACTCGTGGAGTATTGTGGA 699
Query 700 GATCTATGCATTGTTCATC-A-ACT-T-AG---CGTTAC-TAAA-C-A-TT-ATATCAG- 746
|| |||||| ||||||||| | || | || || | |||| | | || || | |
Sbjct 700 GAACTATGCGTTGTTCATCGATTCTATAAGAAATTTTGCGTAAAGCGAGTTCTTA-CCGA 758
Query 747 GAGGACCGTTGGTTTTAAGGTTTATAAGATGGACGAGGATTTGGCAAAATGGGTTGAGGT 806
||| |||||| ||||||||||||||||||||||| || |||||| | |||||||||||||
Sbjct 759 GAGAACCGTTTGTTTTAAGGTTTATAAGATGGACAAGAATTTGGTAGAATGGGTTGAGGT 818
Query 807 TAGTTCCTTGGGAGACAAGGCACTCATTGTTGCTTGGGACAGTTGTTTTACGGTCGTAGC 866
||||||||||||||||||||||||||||| || ||||| ||||||| |||| ||||
Sbjct 819 CAGTTCCTTGGGAGACAAGGCACTCATTGTGGCGACGGACAATTGTTTTTTGGTCTTAGC 878
Query 867 CTCTGAGTACCATGGATGTTTGAAGAATGCTATCTACTTC 906
||| |||||| ||||||||||| |||||||||| ||||||
Sbjct 879 CTCCGAGTACTATGGATGTTTGGAGAATGCTATTTACTTC 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50033210412
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5