BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484337 Length=1021 Score E Sequences producing significant alignments: (Bits) Value AT3G25750.1 | Symbols: | F-box family protein with a domain of... 1424 0.0 AT2G26160.1 | Symbols: | F-box family protein with a domain of... 388 4e-107 AT1G44080.1 | Symbols: | F-box family protein with a domain of... 276 3e-73 > AT3G25750.1 | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr3:9400955-9402088 FORWARD LENGTH=1047 Length=1047 Score = 1424 bits (771), Expect = 0.0 Identities = 958/1044 (92%), Gaps = 30/1044 (3%) Strand=Plus/Plus Query 1 ATGGAGAAAACTGAGTGGTCTGATTTACCTGAAGAACTCCTAGATTTAATTGCAAACCGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGAAAACTGAGTGGTCTGATTTACCTGAAGAACTCCTAGATTTAATTGCAAACCGT 60 Query 61 TATTCCTCCAACATCGACGTCCTCCGTATCCGTAGCATCTGTAAATACTGGCGTTCTACG 120 |||||||||||||| |||||||| ||||||||||||| |||||||| |||||||||| || Sbjct 61 TATTCCTCCAACATTGACGTCCTACGTATCCGTAGCACCTGTAAATCCTGGCGTTCTGCG 120 Query 121 GTTACGATGTCTAAAGAGCGTCTTCAGTTTCGCTTT-AACCGCTACCTTCCTACCTCCAA 179 ||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 121 GTTGCGATGTCTAAAGAGCGTCTTCAGTTTCGCTTTGAA-CGCTACCTTCCTACCTCCAA 179 Query 180 TAAGAAGATAAAGGCTCATCTCTTTCCCACCACTTTCTTCCGTATAACTCTCCCTTCTTC 239 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 180 CAAGAAGATAAAGGCTCATCTCTCTCCCACCACTTTCTTCCGTATAACTCTCCCTTCTTC 239 Query 240 ATGTCCTAACAATGGATGGCTAATAAGAACTAGCCAAGCCTCC-AAA--TATCGTAAGAT 296 |||||||||||| ||||||||| |||||||||| ||||||||| ||| ||||||||||| Sbjct 240 ATGTCCTAACAAAGGATGGCTAGTAAGAACTAGACAAGCCTCCAAAATGTATCGTAAGAT 299 Query 297 TACTCTCTTGAGTCCTATCTCTGGCGAGCTCATCATCCATTCCCACCAAACCCTAGACCT 356 |||||||||| ||||| |||||||||||| ||||| || ||||||||||||||||||||| Sbjct 300 TACTCTCTTGTGTCCTCTCTCTGGCGAGCGCATCACCCGTTCCCACCAAACCCTAGACCT 359 Query 357 TTTGAAGGTTGGCGTTTCAGAGATTCGCCAATCTTACAAGATT-AATATATTTGATGGAT 415 ||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||| Sbjct 360 TTTGAAGGTTGGCGTTTCAGAGATTCGCCAATCTTACGAGATTCAA-ATATTCGATGGAT 418 Query 416 TGAAGGACGAAAAGATACC-----A-TCATATATATTCTCTAATTATGA-CATGAAGTA- 467 ||||||||||||||||||| | ||| | ||||||||||||||| | || ||| || Sbjct 419 TGAAGGACGAAAAGATACCATTAGATTCAGAGATATTCTCTAATTAT-ATCAAGAA-TAG 476 Query 468 TGACAAGACACCATCAGACGGAAGTAGAAGTTGGACAAAAATTAATAACCAAGTCGAAGA 527 |||||| | ||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 477 TGACAAAATACCATCAGAAGGAAGTAGAAGTTGGACAAAAATTAAAAACCAAGTCGAAGA 536 Query 528 TTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAGCAAC 587 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 TTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAGCAAT 596 Query 588 TTGGTGGATTAGTTTATCACAGCTTAGTGCTGTTCAACAGACACCTTCAACTCCATTGGA 647 |||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| Sbjct 597 TTGGTGGATTAGTTTATCACAGCTTACCATTGTTCAACAGACATCTTCAACTCCGTTGGA 656 Query 648 CTACTATAATTATGATAGTTGCGAAGACACGAGGCTCGTGGAATATTGTGGAGATCTATG 707 ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 657 CTACTATAAATATGATAGTTGCCAAGACACGAGGCTCGTGGAATATTGTGGAGATCTATG 716 Query 708 CATTGTTCATCAACTTAGCGTTACTA-AACATTATATC-AGGAGGACCGTTGGTTTTAAG 765 |||||||||| |||||||| | ||| || || ||||| || |||||||||||||||||| Sbjct 717 CATTGTTCATGAACTTAGCATAACTCGAA-ATCATATCCAG-AGGACCGTTGGTTTTAAG 774 Query 766 GTTTATAAGATGGACGAGGATTTGGCAAAATGGGTTGAGGTTAGTTCCTTGGGAGACAAG 825 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 775 GTTTATAAGATGGACGAGGATTTGGCAAAATGGGTTGAGGTTAGTTGCTTGGGAGACAAC 834 Query 826 GCACTCATTGTTGCTTGGGACAGTTGTTTTACGGTCGTAGCCTCTGAGTACCATGGATGT 885 |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 835 ACACTCATTGTTGCTTGCAACAGTTGTTTTACTGTCGTAGCCTCTGAGTACCATGGATGT 894 Query 886 TTGAAGAATGCTATCTACTTCT-TT-T-ATGAT-T-ATG--G-C-GAAAATCTTAAAGTG 936 ||||||||| |||| ||||||| || | ||||| | | | | | |||||| | |||||| Sbjct 895 TTGAAGAATTCTATTTACTTCTCTTATTATGATGTCAAGAAGGCCGAAAATATAAAAGTG 954 Query 937 TTCAAGCTTGATGATGGTAGTATCATCGAGATGACTGATATTTCTTCTCAGAGTTGTTTT 996 ||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| Sbjct 955 TTCAAGCTTGATGATGGTAGTATCACCCAGAGGACTGATATTTCTTCTCAGAGTTGTTTT 1014 Query 997 CACATGTTCTCACTTTCCTTTCTC 1020 ||||||||||| ||| |||| ||| Sbjct 1015 CACATGTTCTCTCTTCCCTTCCTC 1038 > AT2G26160.1 | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr2:11137978-11139451 REVERSE LENGTH=1474 Length=1474 Score = 388 bits (210), Expect = 4e-107 Identities = 362/432 (84%), Gaps = 24/432 (6%) Strand=Plus/Plus Query 490 AGTAGAAGT-TGGACAAAAATTAATAACCAAGTCGAAGATTTCTCGGACATTATACTTCA 548 ||||||| | ||||||||||| || |||||||| |||||||||| ||||||||||||||| Sbjct 532 AGTAGAA-TATGGACAAAAATCAAAAACCAAGTTGAAGATTTCTTGGACATTATACTTCA 590 Query 549 CATGGGACGTA-TCTATGCCGTGGACTTAAAAGGAGCAACTTGGTGGATTAGTTTATCAC 607 | |||| | |||||||| | ||| ||| || |||| |||||||||||||||||||| Sbjct 591 TAAAGGAC-AAGTCTATGCCTTAGACCTAACCGGCGCAATTTGGTGGATTAGTTTATCAC 649 Query 608 AGCTTAGTGCT-GTTCAACAGACACCTTCAACTCCATTGGACTACTA-TAATTATGATAG 665 ||| || || ||||| |||||||||| |||| |||||||| | | |||||||| Sbjct 650 CGCTCAG-CCTCCTTCAATTCACACCTTCAATTCCAATGGACTACGACGGA-TATGATAG 707 Query 666 TTGCGAAGACACGAGGCTCGTGGAATATTGTGGAGATCTATGCATTGTTCATCAACTTAG 725 |||| | ||| ||| ||||| || ||||||||||||||||||||| ||||||||||| | Sbjct 708 TTGC--A-ACAAGAGACTCGTTGAGTATTGTGGAGATCTATGCATTATTCATCAACTTCG 764 Query 726 CGTT-ACTAAA-CATTATAT-C--A-G-G----AGGACCGTTGGTTTTAAGGTTTATAAG 774 | || | ||| | |||||| | | | | ||||| ||||||||||||||||||||| Sbjct 765 C-TTAAAGAAAGC-TTATATCCGAAGGAGTCAAAGGACAGTTGGTTTTAAGGTTTATAAG 822 Query 775 ATGGACGAGGATTTGGCAAAATGGGTTGAGGTTAGTTCCTTGGGAGACAAGGCACTCATT 834 ||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 823 ATGGACGAGTATGTGGCAAAATGGGTTGAGGTTAGGTCCTTGGGAGACAAGGCACTCATT 882 Query 835 GTTGCTTGGGACAGTTGTTTTACGGTCGTAGCCTCTGAGTACCATGGATGTTTGAAGAAT 894 || ||| |||||||||||||||| || |||||||| |||||||||||||||||||| ||| Sbjct 883 GTGGCTAGGGACAGTTGTTTTACTGTTGTAGCCTCCGAGTACCATGGATGTTTGAACAAT 942 Query 895 GCTATCTACTTC 906 ||||||||||| Sbjct 943 TCTATCTACTTC 954 > AT1G44080.1 | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr1:16753944-16755670 REVERSE LENGTH=1044 Length=1044 Score = 276 bits (149), Expect = 3e-73 Identities = 320/400 (80%), Gaps = 22/400 (6%) Strand=Plus/Plus Query 524 AAGATTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAG 583 ||| ||| | ||| ||||||||||||| ||| |||||||| | ||||||| ||||| Sbjct 524 AAGGTTTTTTGGATATTATACTTCACAAAGGAAAAATCTATGCATTAGACTTAACAGGAG 583 Query 584 CAACTTGGTGGATTAGTTTATCACAGCTTAGTGC-TGT-TCAACA-GACACCTTCAACTC 640 ||| |||||||||||||||||| | || | || | | |||| | | ||||||||||| Sbjct 584 CAATTTGGTGGATTAGTTTATCTGAACTCA--GCATATATCAATACG-GACCTTCAACTC 640 Query 641 CATTGGACTACTA-TAATTATGATAGTTGCGAAGACACGAGGCTCGTGGAATATTGTGGA 699 || |||||| ||| || | ||||| |||| |||| | ||| |||||||| ||||||||| Sbjct 641 CAGTGGACTTCTACGAAAT-TGATAATTGCAAAGAAAAGAGACTCGTGGAGTATTGTGGA 699 Query 700 GATCTATGCATTGTTCATC-A-ACT-T-AG---CGTTAC-TAAA-C-A-TT-ATATCAG- 746 || |||||| ||||||||| | || | || || | |||| | | || || | | Sbjct 700 GAACTATGCGTTGTTCATCGATTCTATAAGAAATTTTGCGTAAAGCGAGTTCTTA-CCGA 758 Query 747 GAGGACCGTTGGTTTTAAGGTTTATAAGATGGACGAGGATTTGGCAAAATGGGTTGAGGT 806 ||| |||||| ||||||||||||||||||||||| || |||||| | ||||||||||||| Sbjct 759 GAGAACCGTTTGTTTTAAGGTTTATAAGATGGACAAGAATTTGGTAGAATGGGTTGAGGT 818 Query 807 TAGTTCCTTGGGAGACAAGGCACTCATTGTTGCTTGGGACAGTTGTTTTACGGTCGTAGC 866 ||||||||||||||||||||||||||||| || ||||| ||||||| |||| |||| Sbjct 819 CAGTTCCTTGGGAGACAAGGCACTCATTGTGGCGACGGACAATTGTTTTTTGGTCTTAGC 878 Query 867 CTCTGAGTACCATGGATGTTTGAAGAATGCTATCTACTTC 906 ||| |||||| ||||||||||| |||||||||| |||||| Sbjct 879 CTCCGAGTACTATGGATGTTTGGAGAATGCTATTTACTTC 918 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50033210412 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5