BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484339
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25770.1 | Symbols: AOC2 | allene oxide cyclase 2 | chr3:940... 1195 0.0
AT3G25760.1 | Symbols: AOC1, ERD12 | allene oxide cyclase 1 | c... 1101 0.0
AT3G25780.1 | Symbols: AOC3 | allene oxide cyclase 3 | chr3:940... 697 0.0
> AT3G25770.1 | Symbols: AOC2 | allene oxide cyclase 2 | chr3:9406873-9407955
FORWARD LENGTH=980
Length=980
Score = 1195 bits (647), Expect = 0.0
Identities = 762/817 (93%), Gaps = 10/817 (1%)
Strand=Plus/Plus
Query 39 ATCAAATAGCAGTTTCTTCTCTAGTC--TTTA--TTGTTTTGAGCAATGGCTTCTTCGGC 94
||||| ||| ||||||||||| |||| |||| || |||| | ||||||||||||| ||
Sbjct 58 ATCAAGTAG-AGTTTCTTCTCAAGTCTTTTTATTTTATTTTTATCAATGGCTTCTTCAGC 116
Query 95 AATGTCTCTCCAATCCATCTCCATGACAACTCTCAACAATCTCTCATGTAATCAACAATT 154
| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 117 AGTGTCTCTCCAATCCATCTCTATGACAACTCTCAACAATCTTTCATGTAATCAACAATT 176
Query 155 TCATCGAAGCTCTCTTCTTGGTTTCTCTAAATCCTTTCAAAATCTTGGTATCTCATCTAA 214
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 177 TCATCGAAGCTCTCTTCTTGGTTCCTCTAAATCCTTCCAAAATCTTGGTATCTCATCTAA 236
Query 215 TGGTCCAGATTCCTCCTCTCCATCAAGTTTCACTCCCAAGAAGAAACTCACTGCTTCTCG 274
||| |||||| ||||| |||||||||||||||| |||||||||| ||||||||||||||
Sbjct 237 CGGTTCAGATTTCTCCTATCCATCAAGTTTCACTGCCAAGAAGAACCTCACTGCTTCTCG 296
Query 275 AGCTACTCTCTCCCAGAACGGGAATATCGAAAACCCTAGACCAAGCAAAGTTCAAGAACT 334
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AG---CTCTCTCCCAAAACGGGAATATCGAAAACCCTAGACCAAGCAAAGTTCAAGAACT 353
Query 335 GAGTGTGTACGAAATCAACGAATTAGATCGACACAGCCCCAAGATTCTTAAAAACGCCTT 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 354 GAGTGTGTACGAAATCAACGAATTAGATCGACACAGCCCCAAGATTCTTAAAAACGCATT 413
Query 395 CAGCTTAATGTTCGGTCTCGGAGATCTTGTTCCATTCACAAACAAACTCTACACCGGCGA 454
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 414 CAGCTTAATGTTCGGTCTCGGAGATCTCGTACCATTCACAAACAAACTCTACACAGGCGA 473
Query 455 TCTCAAGAAACGCGTGGGAATCACGGCAGGTCTCTGCGTCGTGATCGAACACGTCCCTGA 514
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 474 TCTCAAGAAACGCGTGGGCATCACGGCAGGTCTCTGCGTCGTCATCGAACACGTCCCAGA 533
Query 515 GAAGAACGGTGACAGATTCGAAGCTACTTACAGCTTCTACTTCGGAGACTATGGCCACTT 574
|||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 534 GAAGAAAGGTGAAAGATTCGAAGCTACTTATAGCTTCTACTTCGGAGACTATGGCCACTT 593
Query 575 GTCCGTACAAGGACCATACTTGACTTACGAGGACTCGTTCCTCGCCATCACTGGTGGCGC 634
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 594 GTCCGTTCAAGGACCATACTTGACTTACGAGGATTCGTTCCTCGCCATCACTGGTGGTGC 653
Query 635 TGGAATCTTCGAAGGTGCGTACGGACAGGTTAAGCTTCAACAGCTTGTGTATCCGACAAA 694
||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 654 TGGAATCTTTGAAGGTGCCTACGGACAGGTCAAGCTTCAACAGCTTGTGTATCCGACAAA 713
Query 695 ACTGTTCTACACTTTTTACCTTAAAGGGTTGGCTAATGATTTGCCATTGGAGCTCACCGG 754
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 714 ACTGTTCTACACTTTTTACCTTAAAGGGTTGGCTAATGATTTGCCGTTGGAGCTCACCGG 773
Query 755 AACGCCGGTACCACCGTCGAAAGATGT-GAAACCGGCGCCGGAAGCTAAGGCGCTTGAGC 813
||| |||||||| ||||| || || | || |||||||||||||||||||| || ||||
Sbjct 774 AACACCGGTACCGCCGTCTAAGGACATAGAG-CCGGCGCCGGAAGCTAAGGCACTGGAGC 832
Query 814 CTAGCGGAGTTATAAGTAACTATACCAACTAATGCAT 850
||||||||||||||||||||||||||||||||| |||
Sbjct 833 CTAGCGGAGTTATAAGTAACTATACCAACTAATTCAT 869
Score = 78.7 bits (42), Expect = 9e-14
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1 AAATCACTCACCACATAAAGTAAAAGTCCCATCTCTTCATCAAATAGC 48
|||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1 AAATCACTCACCACATAAAGTAAAAGTCTCATCTCTTCATAAAATAGC 48
> AT3G25760.1 | Symbols: AOC1, ERD12 | allene oxide cyclase 1 |
chr3:9403883-9405250 FORWARD LENGTH=999
Length=999
Score = 1101 bits (596), Expect = 0.0
Identities = 770/852 (90%), Gaps = 19/852 (2%)
Strand=Plus/Plus
Query 1 AAATCACTCACCACATAAAGTAAAAGTCCCATCTCTT---CATC-AA--ATAGC--AGTT 52
||||||||||||||||||| ||||||||||||||| | | || || | ||||
Sbjct 1 AAATCACTCACCACATAAAACCAAAGTCCCATCTCTTAAAAAACTAATCATTTCAAAGTT 60
Query 53 TCT-TCTCTAGTCTTTATTGTT-TTGAGCAATGGCTTCTTCGGCAATGTCTCTCCAATCC 110
| | |||||||||||| || || |||||||||||||||||| |||| |||||||||||
Sbjct 61 T-TGTCTCTAGTCTTTCTTTTTATTGAGCAATGGCTTCTTCTACAATCTCTCTCCAATCT 119
Query 111 ATCTCCATGACAACTCTCAACAATCTCTCATGTAATCAACAATTTCATCGAAGCTCTCTT 170
||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 120 ATCTCCATGACAACTCTCAACAATCTCTCATATAGTAAACAATTTCATCGAAGCTCTCTT 179
Query 171 CTTGGTTTCTCTAAATCCTTTCAAAATCTTGGTATCTCATCTAATGGTCCAGATTCCTCC 230
|||||||||||||||||||| |||||| |||||||||||||||| ||||||| |||||||
Sbjct 180 CTTGGTTTCTCTAAATCCTTCCAAAATTTTGGTATCTCATCTAACGGTCCAGGTTCCTCC 239
Query 231 TCTCC-ATCAAGTTTCACTCCCAAGAAGAAACTCACTGCTTCTCGAGCTACTCTCTCCCA 289
||||| | |||||||||| |||||||||||||||||| || |||||||| |||||| ||
Sbjct 240 TCTCCGA-CAAGTTTCACGCCCAAGAAGAAACTCACTCCTACTCGAGCT-CTCTCT--CA 295
Query 290 GAAC--GGG-AATATCGAAAACCCTAGACCAAGCAAAGTTCAAGAACTGAGTGTGTACGA 346
|||| ||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 296 GAACTTGGGAAATACCGAAAACCCCAGACCAAGCAAAGTTCAAGAACTGAGCGTGTACGA 355
Query 347 AATCAACGAATTAGATCGACACAGCCCCAAGATTCTTAAAAACGCCTTCAGCTTAATGTT 406
|||||| || ||||||||||||||||| || |||||||||||||| |||||||| | |||
Sbjct 356 AATCAATGATTTAGATCGACACAGCCCAAAAATTCTTAAAAACGCATTCAGCTTTAGGTT 415
Query 407 CGGTCTCGGAGATCTTGTTCCATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACG 466
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TGGTCTCGGAGATCTCGTCCCATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACG 475
Query 467 CGTGGGAATCACGGCAGGTCTCTGCGTCGTGATCGAACACGTCCCTGAGAAGAACGGTGA 526
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 476 CGTGGGAATCACGGCTGGTCTCTGCGTTGTGATCGAACACGTCCCTGAGAAGAACGGTGA 535
Query 527 CAGATTCGAAGCTACTTACAGCTTCTACTTCGGAGACTATGGCCACTTGTCCGTACAAGG 586
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TAGATTCGAAGCTACGTACAGCTTCTACTTCGGAGACTATGGCCACTTGTCCGTACAAGG 595
Query 587 ACCATACTTGACTTACGAGGACTCGTTCCTCGCCATCACTGGTGGCGCTGGAATCTTCGA 646
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 596 ACCATACTTGACTTACGAGGATTCGTTCCTTGCCATCACTGGTGGCGCTGGAATCTTTGA 655
Query 647 AGGTGCGTACGGACAGGTTAAGCTTCAACAGCTTGTGTATCCGACAAAACTGTTCTACAC 706
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AGGTGCCTACGGACAGGTTAAGCTTCAACAGCTTGTGTATCCGACAAAACTGTTCTACAC 715
Query 707 TTTTTACCTTAAAGGGTTGGCTAATGATTTGCCATTGGAGCTCACCGGAACGCCGGTACC 766
|||||| |||||||| |||||||||||||||||| ||||||||| ||||| ||||||||
Sbjct 716 TTTTTATCTTAAAGGATTGGCTAATGATTTGCCACTGGAGCTCATAGGAACTCCGGTACC 775
Query 767 ACCGTCGAAAGATGTGAAACCGGCGCCGGAAGCTAAGGCGCTTGAGCCTAGCGGAGTTAT 826
|||||| || || ||| | || || |||||||||||||||||| |||| || |||||| |
Sbjct 776 ACCGTCTAAGGACGTGGAGCCAGCACCGGAAGCTAAGGCGCTTAAGCCCAGTGGAGTTGT 835
Query 827 AAGTAACTATAC 838
||| |||| |||
Sbjct 836 AAGCAACTTTAC 847
> AT3G25780.1 | Symbols: AOC3 | allene oxide cyclase 3 | chr3:9409290-9410567
FORWARD LENGTH=1007
Length=1007
Score = 697 bits (377), Expect = 0.0
Identities = 652/781 (83%), Gaps = 34/781 (4%)
Strand=Plus/Plus
Query 85 CTTCTTCGGCAATGTCTCTCCAATCCATCTCCATGACAACTCTCAACAATCTCTCAT-GT 143
||||| | || |||||||| |||||||||| ||||||||||||||||||||||| | ||
Sbjct 83 CTTCTGCTGCTATGTCTCTTGAATCCATCTCTATGACAACTCTCAACAATCTCTC-TCGT 141
Query 144 AATCAACAATTTCATCGAAGCTCTCTTCTTGGTTTCTCTAA-ATCCTTT-CAAAATCTTG 201
||||| |||| ||| || || ||||||||||||||||| || || |||| ||||| ||||
Sbjct 142 AATCATCAATCTCACCGCAGTTCTCTTCTTGGTTTCTC-AAGAT-CTTTCCAAAACCTTG 199
Query 202 GTATCTCATCTAATGGTCCAGATTCCTCCTCTCC-ATCAAGTTTC-ACTCCCAAGAAGAA 259
| ||||||||||| |||||||||| |||||| || |||||| || ||| | |||||
Sbjct 200 GAATCTCATCTAACGGTCCAGATTTCTCCTC-CCGATCAAG-ATCTACTACTTCCAAGAA 257
Query 260 ACTC-ACTGCTT-CTCGAGC-TACTCTCTCCCA---GAACGGGAATATCGAAAAC-CCTA 312
||| || | || ||||||| | || ||| | | | ||| | ||||||| || |
Sbjct 258 CCTCAAC-G-TTACTCGAGCTTTCT-TCTGGAATTGGGGCAAGAAGACCGAAAACTCC-A 313
Query 313 GACCAAGCAAAG-TTCAAGAACTGAGTGTGTACGAAATCAACGAATTAGATCGACACAGC 371
||||||| ||| | |||||||| | ||||| || |||||||| |||| || ||||
Sbjct 314 GACCAAG-TAAGATCCAAGAACTAAACGTGTATGAGCTCAACGAAGGAGATAGAAACAG- 371
Query 372 CCCAAG-A-TTCTTAAAAAC-GCCTTCAGCTTA-A-TG-TTCGGTCTCGGAGATCTTGTT 425
|| || | |||||||| | || | | | | | || ||||||||||||| ||
Sbjct 372 TCC-AGCAGTTCTTAAACTCGGCAAGAAACCAACAGAGCTT-TGTCTCGGAGATCTCGTC 429
Query 426 CCATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTGGGAATCACGGCAGGT 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CCATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTGGGAATCACGGCAGGT 489
Query 486 CTCTGCGTCGTGATCGAACACGTCCCTGAGAAGAACGGTGACAGATTCGAAGCTACTTAC 545
|||||||| ||||| ||||||| ||||| |||| |||||||||||||||||||| ||||
Sbjct 490 CTCTGCGTTTTGATCCAACACGTTCCTGAAAAGAGCGGTGACAGATTCGAAGCTAGTTAC 549
Query 546 AGCTTCTACTTCGGAGACTATGGCCACTTGTCCGTACAAGGACCATACTTGACTTACGAG 605
||||||||||| || |||||||| |||||||| |||||||||| |||||||||||| ||
Sbjct 550 AGCTTCTACTTTGGTGACTATGGTCACTTGTCTGTACAAGGACAATACTTGACTTATGAA 609
Query 606 GACTCGTTCCTCGCCATCACTGGTGGCGCTGGAATCTTCGAAGGTGCGTACGGACAGGTT 665
||| |||||||||| ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 610 GACACGTTCCTCGCTGTCACTGGTGGCTCTGGAATCTTTGAAGGTGCGTACGGACAGGTT 669
Query 666 AAGCTTCAACAGCTTGTGTATCCGACAAAACTGTTCTACACTTTTTACCTTAAAGGGTTG 725
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 AAGCTTCGTCAGCTTGTGTATCCGACAAAACTGTTCTACACTTTTTACCTTAAAGGGTTA 729
Query 726 GCTAATGATTTGCCATTGGAGCTCACCGGAACGCCGGT-ACCACCGTCGAAAGATGTGAA 784
||||||||||| || ||||||| || |||||| |||| || |||||||| ||||||||
Sbjct 730 GCTAATGATTTACCGCTGGAGCTTACTGGAACGGCGGTTACG-CCGTCGAAGGATGTGAA 788
Query 785 ACCGGCGCCGGAAGCTAAGGCGCTTGAGCCTAGCGGAGTTATAAGTAACTATACCAACTA 844
|||||| ||||||||||||||| | |||||||| |||||||||||||||| ||| || ||
Sbjct 789 ACCGGCACCGGAAGCTAAGGCGATGGAGCCTAGTGGAGTTATAAGTAACTTTACTAATTA 848
Query 845 A 845
|
Sbjct 849 A 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41443171275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5