BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484340
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25780.1 | Symbols: AOC3 | allene oxide cyclase 3 | chr3:940... 1301 0.0
AT3G25770.1 | Symbols: AOC2 | allene oxide cyclase 2 | chr3:940... 616 2e-175
AT3G25760.1 | Symbols: AOC1, ERD12 | allene oxide cyclase 1 | c... 584 5e-166
> AT3G25780.1 | Symbols: AOC3 | allene oxide cyclase 3 | chr3:9409290-9410567
FORWARD LENGTH=1007
Length=1007
Score = 1301 bits (704), Expect = 0.0
Identities = 875/954 (92%), Gaps = 25/954 (3%)
Strand=Plus/Plus
Query 24 TTAAAGTCTTCTTGATCAATGGCTTCTTCTTCTGCTGCTATGTCTCTCGAATCTATCTCT 83
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 55 TTAAACTCTTCTTGATCAATGGCTTCTTCTTCTGCTGCTATGTCTCTTGAATCCATCTCT 114
Query 84 ATGACAACTCTCAACAATCTCTCCCGTAATCATCAATCTCATAGAAGCTCTCTTCTTGGT 143
||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||
Sbjct 115 ATGACAACTCTCAACAATCTCTCTCGTAATCATCAATCTCACCGCAGTTCTCTTCTTGGT 174
Query 144 TTCTCAAGATCTTTCCAAAACCTTGGGATCTCATCTAACGGTCCAGATTTCTTCTCCCGA 203
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 175 TTCTCAAGATCTTTCCAAAACCTTGGAATCTCATCTAACGGTCCAGATTTCTCCTCCCGA 234
Query 204 TCAAGATCTACTACTTCCAAGAACCTCAACGTTACTCGAGCTTTCTTCTGGAATTGGGGC 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TCAAGATCTACTACTTCCAAGAACCTCAACGTTACTCGAGCTTTCTTCTGGAATTGGGGC 294
Query 264 AAGAAGACTGAAAACTCCAGACCAAGTAAGATCCAAGAACTAAACGTGTACGAGCTAAAC 323
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 295 AAGAAGACCGAAAACTCCAGACCAAGTAAGATCCAAGAACTAAACGTGTATGAGCTCAAC 354
Query 324 GAAGGAGATAGAAACAGTCCAGCAGTTCTTAAACTCGGCAAAAAACCAACAGAGCTCTGT 383
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 355 GAAGGAGATAGAAACAGTCCAGCAGTTCTTAAACTCGGCAAGAAACCAACAGAGCTTTGT 414
Query 384 CTCGGCGATCTTGTACCATTCACCAACAAACTCTACACCGGCGATCTCAAGAAACGCGTC 443
||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 415 CTCGGAGATCTCGTCCCATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTG 474
Query 444 GGAATCACAGCAGGTCTCTGCGTCTTGATCCAACACGTTCCGGAGAAGAGCGGTGACAGA 503
|||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 475 GGAATCACGGCAGGTCTCTGCGTTTTGATCCAACACGTTCCTGAAAAGAGCGGTGACAGA 534
Query 504 TTCGAAGCTAACTACAGCTTCTA-TTTCGGTGACTATGGTCACTTGTCTGTACAAGGACA 562
|||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 535 TTCGAAGCTAGTTACAGCTTCTACTTT-GGTGACTATGGTCACTTGTCTGTACAAGGACA 593
Query 563 GTACCTGACTTACGAAGACACGTTTCTCGCTATCATTGGTGGTTCAGGAATCTTTGAAGG 622
||| ||||||| ||||||||||| |||||| ||| |||||| || ||||||||||||||
Sbjct 594 ATACTTGACTTATGAAGACACGTTCCTCGCTGTCACTGGTGGCTCTGGAATCTTTGAAGG 653
Query 623 TGCGTACGGACAGGTTAAGCTTCGTCAGCTTGTGTATCCGACAAAACTGTTCTACACTTT 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TGCGTACGGACAGGTTAAGCTTCGTCAGCTTGTGTATCCGACAAAACTGTTCTACACTTT 713
Query 683 TTACCTTAAAGGGTTGGCTAATGATTTGCCGCTGGAGCTAACTGGAACGGTGGTTACGCC 742
||||||||||||||| ||||||||||| ||||||||||| |||||||||| |||||||||
Sbjct 714 TTACCTTAAAGGGTTAGCTAATGATTTACCGCTGGAGCTTACTGGAACGGCGGTTACGCC 773
Query 743 GTCGAAAGATGTGAAACCGGCGCCGGAAGCTAAGGCGATGGAGCCTAGCGGAGTTATTAG 802
|||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 774 GTCGAAGGATGTGAAACCGGCACCGGAAGCTAAGGCGATGGAGCCTAGTGGAGTTATAAG 833
Query 803 TAACTTTACTAATTAAGTAAATTAGTTGTGTGTTT-TTCTCTTGTTTTGTAATCGAATCT 861
|||||||||||||||||||| |||| ||| | | || | |||||||||||| |||| |
Sbjct 834 TAACTTTACTAATTAAGTAA-TTAGCTGTTTAATAGTTGTTTTGTTTTGTAATAGAATAT 892
Query 862 TTTGATGAGTTGTGTGAGG---G--AAT-A-------A---A-----GTATTTATTTTGA 900
||||||||||||||||||| | ||| | | | |||||||||||||
Sbjct 893 TTTGATGAGTTGTGTGAGGTTAGTTAATGATGTGTTGAGGGAATAAAGTATTTATTTTGA 952
Query 901 CGTGACTTTATTGATTACGACTGGTCTTTCTACAACGTGGAATTGTTGTACTCG 954
||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 953 TGTGACTTTATTGATTACAACTGGTCTTTCTACAACGTGGAACTGTTGTACTCG 1006
> AT3G25770.1 | Symbols: AOC2 | allene oxide cyclase 2 | chr3:9406873-9407955
FORWARD LENGTH=980
Length=980
Score = 616 bits (333), Expect = 2e-175
Identities = 632/771 (82%), Gaps = 41/771 (5%)
Strand=Plus/Plus
Query 64 TGTCTCTCGAATCTATCTCTATGACAACTCTCAACAATCTCTCCCGTAATCATCAATCTC 123
|||||||| |||| |||||||||||||||||||||||||| || ||||||| |||| ||
Sbjct 119 TGTCTCTCCAATCCATCTCTATGACAACTCTCAACAATCTTTCATGTAATCAACAATTTC 178
Query 124 ATAGAAGCTCTCTTCTTGGTTTCTC-AAGATCTTTCCAAAACCTTGGGATCTCATCTAAC 182
|| |||||||||||||||||| ||| || ||| |||||||| ||||| ||||||||||||
Sbjct 179 ATCGAAGCTCTCTTCTTGGTTCCTCTAA-ATCCTTCCAAAATCTTGGTATCTCATCTAAC 237
Query 183 GGTCCAGATTTCTTCT-CCCGATCAAGATCTACTACTTCC---AAGAACCTCAAC-G-TT 236
||| ||||||||| || || |||||| | | | ||| || ||||||||| || | ||
Sbjct 238 GGTTCAGATTTCTCCTATCC-ATCAAG-T-TTC-ACTGCCAAGAAGAACCTC-ACTGCTT 292
Query 237 ACTCGAGCTTTCTTCTGGAATTGGGGCAAGAAGACTGAAAACTCC-AGACCAAG-TAAGA 294
|||||||| || || || ||| || | | |||||| || |||||||| |||
Sbjct 293 -CTCGAGCTCTC-TC-CCAAAACGGG-AA-TA-TC-GAAAAC-CCTAGACCAAGCAAAG- 343
Query 295 TCCAAGAACTAAACGTGTACGAGCTAAACGAAGGAGATAGAAACAGTCCAGC-AG-TTCT 352
| |||||||| | |||||||| | |||||| |||| || |||| || | || ||||
Sbjct 344 TTCAAGAACTGAGTGTGTACGAAATCAACGAATTAGATCGACACAG-CC-CCAAGATTCT 401
Query 353 TAAACTCGGCAAAAAACCAACAGAGCTCTGTCTCGGCGATCTTGTACCATTCACCAACAA 412
|||| | ||| | | | | | || ||||||| ||||| ||||||||||| |||||
Sbjct 402 TAAAAAC-GCATTCAGCTTA-A-TGTTCGGTCTCGGAGATCTCGTACCATTCACAAACAA 458
Query 413 ACTCTACACCGGCGATCTCAAGAAACGCGTCGGAATCACAGCAGGTCTCTGCGTCTTGAT 472
||||||||| |||||||||||||||||||| || ||||| ||||||||||||||| | ||
Sbjct 459 ACTCTACACAGGCGATCTCAAGAAACGCGTGGGCATCACGGCAGGTCTCTGCGTCGTCAT 518
Query 473 CCAACACGTTCCGGAGAAGAGCGGTGACAGATTCGAAGCTAAC-TACAGCTTCTATTTCG 531
| ||||||| || ||||||| ||||| |||||||||||| || || |||||||| ||||
Sbjct 519 CGAACACGTCCCAGAGAAGAAAGGTGAAAGATTCGAAGCT-ACTTATAGCTTCTACTTCG 577
Query 532 GTGACTATGGTCACTTGTCTGTACAAGGA-CAGTACCTGACTTACGAAGACACGTTTCTC 590
| |||||||| |||||||| || |||||| || ||| |||||||||| || |||| |||
Sbjct 578 GAGACTATGGCCACTTGTCCGTTCAAGGACCA-TACTTGACTTACGAGGATTCGTTCCTC 636
Query 591 GCTATCATTGGTGGTTCAGGAATCTTTGAAGGTGCGTACGGACAGGTTAAGCTTCGTCAG 650
|| |||| ||||||| | ||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 637 GCCATCACTGGTGGTGCTGGAATCTTTGAAGGTGCCTACGGACAGGTCAAGCTTCAACAG 696
Query 651 CTTGTGTATCCGACAAAACTGTTCTACACTTTTTACCTTAAAGGGTTGGCTAATGATTTG 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CTTGTGTATCCGACAAAACTGTTCTACACTTTTTACCTTAAAGGGTTGGCTAATGATTTG 756
Query 711 CCGCTGGAGCTAACTGGAACGGTGGTTAC-GCCGTCGAAAGATGT-GAAACCGGCGCCGG 768
||| ||||||| || ||||| ||| || |||||| || || | || ||||||||||
Sbjct 757 CCGTTGGAGCTCACCGGAACACCGGT-ACCGCCGTCTAAGGACATAGAG-CCGGCGCCGG 814
Query 769 AAGCTAAGGCGA-TGGAGCCTAGCGGAGTTATTAGTAACTTTACTAATTAA 818
|||||||||| | ||||||||||||||||||| ||||||| ||| || |||
Sbjct 815 AAGCTAAGGC-ACTGGAGCCTAGCGGAGTTATAAGTAACTATACCAACTAA 864
> AT3G25760.1 | Symbols: AOC1, ERD12 | allene oxide cyclase 1 |
chr3:9403883-9405250 FORWARD LENGTH=999
Length=999
Score = 584 bits (316), Expect = 5e-166
Identities = 638/789 (81%), Gaps = 39/789 (5%)
Strand=Plus/Plus
Query 52 CTTCTGCTGCTATGTCTCTCGAATCTATCTCTATGACAACTCTCAACAATCTCTCCCGTA 111
||||| || | || |||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct 94 CTTCTTCTACAATCTCTCTCCAATCTATCTCCATGACAACTCTCAACAATCTCTCATATA 153
Query 112 ATCATCAATCTCATAGAAGCTCTCTTCTTGGTTTCTC-AAGATCTTTCCAAAACCTTGGG 170
| | |||| |||| |||||||||||||||||||||| || ||| |||||||| ||||
Sbjct 154 GTAAACAATTTCATCGAAGCTCTCTTCTTGGTTTCTCTAA-ATCCTTCCAAAATTTTGGT 212
Query 171 ATCTCATCTAACGGTCCAGATTTCTTCTC-CCGATCAAGATCTACTACTTCC---AAGAA 226
||||||||||||||||||| || || ||| |||| |||| | | | || || |||||
Sbjct 213 ATCTCATCTAACGGTCCAGGTTCCTCCTCTCCGA-CAAG-T-TTC-ACGCCCAAGAAGAA 268
Query 227 CCTCAACGT--TACTCGAGCTTTCTTCT-GGAA-TTGGGGCAAGAAGACTGAAAACTCCA 282
||| || | |||||||||| || ||| ||| || ||| | || || |||||| |||
Sbjct 269 ACTC-AC-TCCTACTCGAGCTCTC-TCTCAGAACTT-GGG--A-AATACCGAAAACCCCA 321
Query 283 GACCAAG-TAAGATCCAAGAACTAAACGTGTACGAGCTAAACGAAGGAGATAGAAACAGT 341
||||||| ||| | |||||||| | ||||||||| | || || |||| || ||||
Sbjct 322 GACCAAGCAAAG-TTCAAGAACTGAGCGTGTACGAAATCAATGATTTAGATCGACACAGC 380
Query 342 CCAGCAGTTCTTAAACTCGGCAAAAAACCAACAGAGCTCT-GTCTCGGCGATCTTGTACC 400
||| | |||||||| | || | | | || | | | ||||||| ||||| || ||
Sbjct 381 CCAAAAATTCTTAAAAAC-GC-ATTCAGCTTTAG-G-TTTGGTCTCGGAGATCTCGTCCC 436
Query 401 ATTCACCAACAAACTCTACACCGGCGATCTCAAGAAACGCGTCGGAATCACAGCAGGTCT 460
|||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 437 ATTCACAAACAAACTCTACACCGGCGATCTCAAGAAACGCGTGGGAATCACGGCTGGTCT 496
Query 461 CTGCGTCT-TGATCCAACACGTTCCGGAGAAGAGCGGTGACAGATTCGAAGCTAAC-TAC 518
|||||| | ||||| ||||||| || ||||||| |||||| |||||||||||| || |||
Sbjct 497 CTGCGT-TGTGATCGAACACGTCCCTGAGAAGAACGGTGATAGATTCGAAGCT-ACGTAC 554
Query 519 AGCTTCTATTTCGGTGACTATGGTCACTTGTCTGTACAAGGA-CAGTACCTGACTTACGA 577
|||||||| ||||| |||||||| |||||||| ||||||||| || ||| ||||||||||
Sbjct 555 AGCTTCTACTTCGGAGACTATGGCCACTTGTCCGTACAAGGACCA-TACTTGACTTACGA 613
Query 578 AGACACGTTTCTCGCTATCATTGGTGGTTCAGGAATCTTTGAAGGTGCGTACGGACAGGT 637
|| |||| || || |||| |||||| | ||||||||||||||||| |||||||||||
Sbjct 614 GGATTCGTTCCTTGCCATCACTGGTGGCGCTGGAATCTTTGAAGGTGCCTACGGACAGGT 673
Query 638 TAAGCTTCGTCAGCTTGTGTATCCGACAAAACTGTTCTACACTTTTTACCTTAAAGGGTT 697
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 674 TAAGCTTCAACAGCTTGTGTATCCGACAAAACTGTTCTACACTTTTTATCTTAAAGGATT 733
Query 698 GGCTAATGATTTGCCGCTGGAGCTAACT-GGAACGGTGGTTACG-CCGTCGAAAGATGTG 755
||||||||||||||| |||||||| | | ||||| ||| || ||||| || || |||
Sbjct 734 GGCTAATGATTTGCCACTGGAGCTCA-TAGGAACTCCGGT-ACCACCGTCTAAGGACGTG 791
Query 756 AAACCGGCGCCGGAAGCTAAGGCGATGGAGCCTAGCGGAGTTATTAGTAACTTTACTAAT 815
| || || ||||||||||||||| | |||| || |||||| | || |||||||| |||
Sbjct 792 GAGCCAGCACCGGAAGCTAAGGCGCTTAAGCCCAGTGGAGTTGTAAGCAACTTTACAAAT 851
Query 816 TAAGTAAAT 824
|| || |||
Sbjct 852 TA-GTGAAT 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5