BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484344
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25805.1 | Symbols: | unknown protein; Has 98 Blast hits to... 1598 0.0
> AT3G25805.1 | Symbols: | unknown protein; Has 98 Blast hits
to 98 proteins in 45 species: Archae - 0; Bacteria - 51; Metazoa
- 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes
- 4 (source: NCBI BLink). | chr3:9426276-9428192 REVERSE
LENGTH=1109
Length=1109
Score = 1598 bits (865), Expect = 0.0
Identities = 1023/1098 (93%), Gaps = 15/1098 (1%)
Strand=Plus/Plus
Query 1 CAGCGAAGGGACGACGATGATTCTGATAACCTCACCGACGGTGACATATCTCC-ACAACC 59
||| |||||||||||||||||||||||||||||||||||| |||||||||||| | |||
Sbjct 8 CAGTGAAGGGACGACGATGATTCTGATAACCTCACCGACGTTGACATATCTCCGTC-ACC 66
Query 60 GTCTTCTCAATTTCCAAACCAAATCGCCGCAATTTTACCGCCATTTTCGTCGGAGTAGAG 119
|||| | || || ||||| ||||||||| ||| || ||||||||||| |||||||||||
Sbjct 67 GTCTCCACAGTTCCCAAATCAAATCGCCACAAATTCGCCGCCATTTTCTTCGGAGTAGAG 126
Query 120 AAATCTCGACCGTCGATCGCTGCTGCAATCCATGGCAGACAACAATGGATTATTTCAAAT 179
||||||| || ||||||||||||| ||||||||||||| | || | || ||||||||
Sbjct 127 AAATCTCCACAGTCGATCGCTGCTACAATCCATGGCAGTCTAC---GAATCGTTTCAAAT 183
Query 180 TACGAACACGAGACAGTTCCTTCTTATGCTCTGCTCGCCGGAAACCGGAGACGGCGACGG 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 184 TACGAACACGAGACAGTTCCTTCTTATGCTGTGCTCGCCGGAAACCGGAGACGGCGACGG 243
Query 240 TTGAGGTTGATGATGATTCTGTACGGAGAATCGTTCGGTATCTTCTATGGAGTGGTGAAG 299
| |||||||| ||||||||| || ||||||| ||||||||||||||||||| | ||||||
Sbjct 244 TAGAGGTTGAAGATGATTCTATAAGGAGAATTGTTCGGTATCTTCTATGGACTAGTGAAG 303
Query 300 CTGTGTATATACTATGGCTCTTTCTTCTCCCTTACGCTCCTGGAGATCCAGTTTGGGCAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CTGTGTATATACTATGGCTCTTTCTTCTCCCTTACGCTCCTGGAGATCCAGTTTGGGCAA 363
Query 360 TTAGTTCAGAGACAGTGAATTCTCTTTTGGGACTTTCTTTGAATTTTTTCTTTGTCTTGC 419
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 364 TTAGTTCAGAGACAGTGAATTCTCTTTTGGGACTTTCTCTGAATTTCTTCTTTGTCTTGC 423
Query 420 CTCTTACAAACGCCGCTGGTATTCAGTTCTTACAAGCTCCTGTTCTTCACCCGATGGCTG 479
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 424 CTCTTACAAACGCCGCTGGTATTCACTTCTTACAAGCTCCTGTTCTTCACCCGATGGCTG 483
Query 480 AAGGATTATTCAACTTTGTGATAGCTTGGACACTCATGTTTGCTCCGTTGCTATACACGG 539
|||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 484 AAGGGTTATTCAACTTTGTAATAGCTTGGACACTCATGTTTGCTCCATTGCTATACACAG 543
Query 540 ACCGGAAGAGAGATCGATACAAAAGCTCTCTTGACGTCTTATGGGGTCTCATGATGTTCC 599
|||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 544 ACCGAAAGAGAAATCGATACAAAAGCTCTCTTGACGTCTTATGGAGTCTCATGATGTTCC 603
Query 600 TCACAAACACGTTTCTAATCCCATACATGGCTTTACGGCTCAATGACGCTGACCCAGATG 659
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TTACAAACACGTTTCTAATCCCATACATGGCTTTACGGCTCAATGACGCTGACCCAGATG 663
Query 660 ATAAACCGAGCAAAAGGTCTCAACTTGGCGAAGCAATGACCAAAGGTGCCCCAATAGTTG 719
||||||| |||||||||||||||||||| |||| |||||||||||||| ||||||||||
Sbjct 664 ATAAACCAAGCAAAAGGTCTCAACTTGGTGAAGTGATGACCAAAGGTGCACCAATAGTTG 723
Query 720 GTCTGACCGGAGCTACGGTGTGTCTGATATCAATATTGTGGTCTCTCTATGGTCGAGCAG 779
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 724 GTCTGACCGGAGCTACGGTGTGTCTGATATCAGCATTGTGGTCTCTCTACGGTCGAGCAG 783
Query 780 ATGGAGATTTTGGTGGAATCATGGACAGATGGCAGTATCTCG-TTGGTTATTTGGGATCG 838
|||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 784 ATGGTGATTTCGGTGGAATCATGGACAGATGGCAGTATCT-GATTGGTTATTTGGGATCG 842
Query 839 GAGAGACTGGCTTACGCGTTTATATGGGATATATGTCTGTACACAATCTTTCAGCCATGG 898
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GAGAGACTAGCTTACGCGTTTATATGGGATATATGTCTGTACACAATCTTTCAGCCATGG 902
Query 899 TTGATTGGAGAGAACCTGCAAAATGTGAAGAAGA-CTAAGATTGAATTGGTGAGGTATCT 957
|||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||
Sbjct 903 TTGATTGGAGAGAACCTGCAAAATGTGAAGAAGAAC-AAGATTGAATTGGTGAAGTATCT 961
Query 958 TAGGTTTGTTCCTGTTTTTGGTTTGCTTGCATATCTTTTGTTTATCAATCTCGAAAATGA 1017
||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| ||||
Sbjct 962 AAGGTTTGTTCCTGTTTTTGGTTTACTTGCATATCATTTGTTTCTCAATCTCGAAGATGA 1021
Query 1018 ATCAGTTTAATTAGTTAATTGGTATACACACATATTGTCGTTGTACTCT-TATCAAATGT 1076
|||| ||||||| |||| | ||||||||||||||||||||||||| | || |||||||
Sbjct 1022 ATCAATTTAATTTGTTA---G-TATACACACATATTGTCGTTGTACT-TATAACAAATGT 1076
Query 1077 AATTATATTATGGAAATT 1094
||||||||||||||||||
Sbjct 1077 AATTATATTATGGAAATT 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53614182060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5