BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484349

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25850.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...   470    9e-132


> AT3G25850.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr3:9458178-9458954 REVERSE LENGTH=777
Length=777

 Score =  470 bits (254),  Expect = 9e-132
 Identities = 279/291 (96%), Gaps = 2/291 (1%)
 Strand=Plus/Plus

Query  75   TGCTACTTTTGGGGTCATAAGGAATGCATCAAGCGCTCACTTCTGCATCCATCTCCTTGC  134
            ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  115  TGCTATTTTTGGGGGCATAAGGAATGCATCAAGCGCTCACTTCTGCATCCATCTCCATGC  174

Query  135  AAACATTCTCTCAAGATCTACACA--CGAGGCATTGGGCTATGGAGGTGACCATTGTCAT  192
            |||||||||||||| |||||||||  ||||||||||||||||| ||||||||||||||||
Sbjct  175  AAACATTCTCTCAAAATCTACACACTCGAGGCATTGGGCTATGCAGGTGACCATTGTCAT  234

Query  193  TTTTGTAGAGATTATCTTCTTGATGAtttttttCATTGTTTGATATACAACATCAATATG  252
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct  235  TTTTGTAGAGATTATCTTCTTGATGATTTTTTTCATTGTTTGATATGCAACATCAACATG  294

Query  253  GATCTAAAATGTCTTAAAGATCCACCACCATCAAGTATTTATTACCCAAAAAACCATATG  312
            ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  295  GATCTCAAATGTCTTAAAGATCCACCACCATCAAGTATTTATCACCCAAAAAACCATATG  354

Query  313  CATATGCTTACTCTTTTGGCGAGAGTGGTCACATTTACTTGTAATGCATGT  363
            |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  355  CATATGCTTACTCTTTTGCCGAGAGTGGTCACATTTACTTGTAATGCATGT  405


 Score =  206 bits (111),  Expect = 3e-52
 Identities = 180/210 (86%), Gaps = 17/210 (8%)
 Strand=Plus/Plus

Query  416  GTTGCTCCCATGGAGCTTTTACATGCCCACGTTGTCCAAGTATTGCCTTTCATTTAAAAT  475
            ||||||||||||||||||||||||||   |||||||| ||| |||| |||||||||||||
Sbjct  581  GTTGCTCCCATGGAGCTTTTACATGCTTGCGTTGTCCTAGTCTTGCATTTCATTTAAAAT  640

Query  476  GTGCGATGAAAGATGGCGTGTGGGATGGAAAAGAATTCGAAGCTGAACCGgaagaagagc  535
            ||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||
Sbjct  641  GTGCGATGAAAGATGACGTGTGGGATGGAAAAGAATTCGAAGCTGAACCCAAAGAAGAGC  700

Query  536  ttgaagatgaaaccgacgaagaactcgaagatgattccgaagaag-aaatcgaaggtgat  594
            ||||||||||| |           ||||||||||||||||| ||| |||| |||| ||||
Sbjct  701  TTGAAGATGAA-C-----------TCGAAGATGATTCCGAA-AAGGAAATTGAAGATGAT  747

Query  595  ac--c-gaagaagaaatcgaagaaCAATAA  621
            |   | ||||||||||||||||||| ||||
Sbjct  748  AGTTCTGAAGAAGAAATCGAAGAACCATAA  777



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29939551612


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5