BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484356
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25900.1 | Symbols: HMT-1, ATHMT-1 | Homocysteine S-methyltr... 1842 0.0
> AT3G25900.1 | Symbols: HMT-1, ATHMT-1 | Homocysteine S-methyltransferase
family protein | chr3:9480833-9482926 FORWARD LENGTH=1354
Length=1354
Score = 1842 bits (997), Expect = 0.0
Identities = 1214/1312 (93%), Gaps = 41/1312 (3%)
Strand=Plus/Plus
Query 1 AAAACAAAACACAAAAGCGGCGTTGAtttttttCGATTTTCCGACAAGATTTCTCGTGAG 60
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 23 AAAAAAAAACACAAAAGCGGCGTTGATTTTTTTAGATTTTCCGACAAGATTTCTCGTGAG 82
Query 61 -A-A-------G-A------TTT-G-AGAGGTTTTGAGTTAATTTTCAAAATGGGTTTGG 102
| | | | ||| | |||||||||||||||| ||||||||||| |||||
Sbjct 83 AAGATTTGTCTGAATCTTTCTTTCGAAGAGGTTTTGAGTTAA-TTTCAAAATGGTTTTGG 141
Query 103 AGAAAAAATCTGCATTGTTGGAAGATTTAATAAAGAAATGCGGCGGTTGTGCGGTGGTCG 162
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 142 AGAAAAAATCTGCATTGTTGGAAGATTTGATAAAGAAATGCGGCGGTTGTGCGGTGGTCG 201
Query 163 ACGGTGGTTTCGCTACCCAGCTTGAGATTCACGGCGCCGCTATTAATGACCCTTTGTGGA 222
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 202 ACGGTGGTTTCGCTACCCAGCTTGAGATTCACGGCGCCGCCATTAACGACCCTTTGTGGA 261
Query 223 GTGCTGTTTCTCTCATCAAAAATCCTGAACTCATCAAAAGGGTTCACATGGAATATTTGG 282
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 262 GTGCTGTTTCTCTCATCAAAAATCCTGAGCTCATCAAAAGGGTTCACATGGAATATTTGG 321
Query 283 AAGCTGGTGCAGACATTGTGGTTACTTCATCTTATCAGGCTACTATCCCGGGGTTTCTTT 342
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 322 AAGCTGGTGCAGACATTGTGGTTACTTCATCTTATCAGGCTACGATCCCGGGGTTTCTTT 381
Query 343 CGAGAGGTTTATCGATAGAAGAGAGCGAGTCTTTGCTACAAAAGAGTGTACAATTAGCTG 402
| ||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 382 CTAGAGGTTTATCAATAGAAGAGAGCGAGTCTTTGCTTCAAAAGAGTGTAGAATTAGCTG 441
Query 403 TTGAAGCTCGTGATAGATTCTGGGACAAAGTGAGCAAAGTTTCAGGACATAGCTATAACA 462
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 442 TTGAAGCTCGTGATAGATTCTGGGAGAAAGTGAGCAAGGTTTCAGGACATAGCTATAACA 501
Query 463 GAGCTCTTGTAGCTGCATCTATTGGAAGTTATGGAGCTTATCTTGCTGATGGCTCTGAGT 522
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 502 GAGCTCTTGTAGCTGCATCTATTGGAAGCTATGGTGCTTATCTTGCTGATGGCTCTGAGT 561
Query 523 ACAGTGGTAACTATGGTGAGGATGTAAGTTTGGATAAACTAAAAGACTTTCATAGGAGAA 582
|||||||| ||||||||||| |||||||||||||||||||||| |||||||| |||||||
Sbjct 562 ACAGTGGTCACTATGGTGAGAATGTAAGTTTGGATAAACTAAAGGACTTTCACAGGAGAA 621
Query 583 GACTTCAAGTCTTAGTGGAAGCTGGTCCTGATCTTCTTGCTTTTGAAACCATACCAAATA 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 622 GACTTCAAGTCTTAGTGGAAGCTGGTCCTGATCTTCTTGCTTTTGAAACCATACCGAATA 681
Query 643 AACTCGAGGCTCAGGCGTGCGTTGAGCTTTTGGAAGAAGAGAAAGTGCAGATCCCAGCAT 702
||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 682 AACTCGAAGCTCAGGCTTGCGTTGAGCTTTTGGAGGAAGAGAAAGTGCAAATCCCAGCAT 741
Query 703 GGATCTGTTTTACATCGGTAGATGGTGAGAAAGCTCCATCAGGAGAGAGCTTTGAGGAAT 762
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 GGATCTGCTTCACATCTGTAGATGGTGAGAAAGCTCCATCAGGAGAGAGCTTTGAGGAAT 801
Query 763 GCCTCGAAGCTCTTAACAAAAGCAACAATATTTATGCGGTTGGTATAAACTGCGCTCCTC 822
| || ||| ||||||||||||||||||||||||| || |||||||| |||||||| ||||
Sbjct 802 GTCTTGAACCTCTTAACAAAAGCAACAATATTTACGCAGTTGGTATTAACTGCGCACCTC 861
Query 823 CTCAATTCATCGAAAATCTGATTCGCAAATTCGCCAAGTTGACCAAGAAGGCAATCGTTG 882
|||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||
Sbjct 862 CTCAATTCATCGAAAATCTGATTCGCAAATTCGCCAAGCTGACGAAGAAAGCAATCGTTG 921
Query 883 TTTACCCGAATAGCGGAGAGGTTTGGGATGGAAAAGCGAAACAATGGCTGCCATCACAAT 942
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 922 TTTACCCGAATAGCGGAGAGGTTTGGGATGGAAAAGCTAAACAATGGCTGCCATCACAAT 981
Query 943 GCTTTGGTGATGATGAATTTGAGATGTTTGCAACGAAATGGCGTGACCTTGGAGCTAAAC 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 GCTTTGGTGATGATGAATTTGAGATGTTTGCAACGAAATGGCGTGACCTTGGAGCTAAAC 1041
Query 1003 TCATAGGAGGATGTTGCAGGACTACACCTTCCACCATTAAAGCTATCTCCAAAGATTTGA 1062
|||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1042 TCATCGGAGGATGTTGCAGGACTACACCTTCCACCATTAACGCTATCTCCAGAGATTTGA 1101
Query 1063 AAAGAAGATGATTTTTCTTCTGGGAGAA-----T-----TTC------AACTTGTTAACT 1106
|| ||||||||||||||||| ||||||| | ||| ||||| ||||||
Sbjct 1102 AACGAAGATGATTTTTCTTCAGGGAGAAAAGACTGAAGATTCTTTTTCAACTTTTTAACT 1161
Query 1107 AGCTTGACCATTGTTAGGGCTACATTTATCTGTGTTCTGTTGTTTTCTTGTTGTTCACGT 1166
|||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 1162 AGCTTGACCATTGTTAGGGCTA--TCTATCTGTTTTCTGTTGTTTTCTTGTTGTTCACGT 1219
Query 1167 TTCCTTTGTTGTCTGAT-AT--GTATCCGCAAACTAGGCCTTGGGCTTTTTCAATGTAAT 1223
|| |||||| || |||| || |||| || |||||||||||||||| |||||||||||||
Sbjct 1220 TTTCTTTGTGGTTTGATGATATGTATTCGTAAACTAGGCCTTGGGCGTTTTCAATGTAAT 1279
Query 1224 GGCCCATAAAGTGTTTTCTTTATAAAAAATTACCCGATTTAAATCTTTAATA 1275
|||||||||| | |||||||||| |||| ||||||||||| |||||||||||
Sbjct 1280 GGCCCATAAAATATTTTCTTTATCAAAA-TTACCCGATTTGAATCTTTAATA 1330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62700480705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5