BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484357

Length=583
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25905.1 | Symbols: CLE27 | CLAVATA3/ESR-RELATED 27 | chr3:9...   824    0.0  


> AT3G25905.1 | Symbols: CLE27 | CLAVATA3/ESR-RELATED 27 | chr3:9486168-9486771 
REVERSE LENGTH=604
Length=604

 Score =  824 bits (446),  Expect = 0.0
 Identities = 551/598 (92%), Gaps = 21/598 (4%)
 Strand=Plus/Plus

Query  1    CTCTCTCTCTCAACTTCAGAAATAGTCATAGGAGGTAGATCTAACCC-----AG---AGA  52
            ||||||||||||||||||||||||||||||| || ||||||||||||     ||   |||
Sbjct  12   CTCTCTCTCTCAACTTCAGAAATAGTCATAGAAGATAGATCTAACCCAGAGAAGACAAGA  71

Query  53   -AG--AGAAGACATACAGAATCGATGATTAGGGTTTAATCAAGAAGACGACTTTATGGTT  109
             ||  |||||| ||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct  72   CAGAAAGAAGAGATATAAAATCGATGATTAGGGTTTAATCAAGAAGACGACTTTAT-GTT  130

Query  110  AGGGTTTAGGTTTGGGATATGACTCATGCTCGAGAATGGAGAAGCTCTTTGACTACTACT  169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  131  AGGGTTTAGGTTTGGGATATGACTCATGCTCGAGAATGGAGAAGCTCTTTGACTACTACA  190

Query  170  CTTCTAATGGTGATCTTGCTTTCTCCTCTACTCCATCTCTTCTGTGTATATTCACGGGTA  229
            ||||||||||||||||||||||||  | | ||||||||||||||||||||||||||||||
Sbjct  191  CTTCTAATGGTGATCTTGCTTTCTTATATGCTCCATCTCTTCTGTGTATATTCACGGGTA  250

Query  230  GGGGCAATTCGGGTATTTCCAGTAACTCCGGCTCCGGCTAAGAGACAAGAAGA---TCTA  286
            |||||||||||| ||||||||| |||||||||| ||| |||||||||||||||   ||||
Sbjct  251  GGGGCAATTCGGATATTTCCAGAAACTCCGGCTTCGGGTAAGAGACAAGAAGAAGATCTA  310

Query  287  GTGAAGAAGTACTTCGGCGCCGGGAAATTTCCACCGGTGGATTCTTTTGTCGGAAAAGGG  346
             |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  311  ATGAAGAAGTACTTCGGCGCCGGGAAATTTCCACCGGTGGATTCTTTTGTCGGTAAAGGG  370

Query  347  ATCAGTGAGAGTAAGAGAATAGTACCAAGTTGTCCAGATCCTCTGCATAACTAGTAGAAG  406
            |||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||
Sbjct  371  ATCAGTGAGAGTAAAAGAATAGTACCAAGTTGTCCGGATCCTTTGCATAACTAGTAGAAG  430

Query  407  CAGTTTCTTGATGtttttttttttcatttttatttatatttt-CTTCTCTTGTTTATGTT  465
            |||||||||||||| |||||||||  |||   |||||||||| ||||| | |||||||||
Sbjct  431  CAGTTTCTTGATGTGTTTTTTTTT--TTTGG-TTTATATTTTTCTTCT-T-GTTTATGTT  485

Query  466  AATGATCAATCAACTAGTGTATTTTACCCAAAATACCTACGTTTTTCTCGATAATATAAG  525
            ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  486  AATGATCAACCAACTAGTGTATTTTACCCAAAATACCTACGTTTTTCTCGTTAATATAAG  545

Query  526  GGAAAAACGAGGGTATTTTGGATATTTTAATCACTGATCTATAACCTTTTCATATATA  583
            |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct  546  GGAAAAACGAGGGTATTTTGGAGATTTTAATCACTGATCTATAACCATTTCATATATA  603



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28030654026


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5