BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484357 Length=583 Score E Sequences producing significant alignments: (Bits) Value AT3G25905.1 | Symbols: CLE27 | CLAVATA3/ESR-RELATED 27 | chr3:9... 824 0.0 > AT3G25905.1 | Symbols: CLE27 | CLAVATA3/ESR-RELATED 27 | chr3:9486168-9486771 REVERSE LENGTH=604 Length=604 Score = 824 bits (446), Expect = 0.0 Identities = 551/598 (92%), Gaps = 21/598 (4%) Strand=Plus/Plus Query 1 CTCTCTCTCTCAACTTCAGAAATAGTCATAGGAGGTAGATCTAACCC-----AG---AGA 52 ||||||||||||||||||||||||||||||| || |||||||||||| || ||| Sbjct 12 CTCTCTCTCTCAACTTCAGAAATAGTCATAGAAGATAGATCTAACCCAGAGAAGACAAGA 71 Query 53 -AG--AGAAGACATACAGAATCGATGATTAGGGTTTAATCAAGAAGACGACTTTATGGTT 109 || |||||| ||| | |||||||||||||||||||||||||||||||||||||| ||| Sbjct 72 CAGAAAGAAGAGATATAAAATCGATGATTAGGGTTTAATCAAGAAGACGACTTTAT-GTT 130 Query 110 AGGGTTTAGGTTTGGGATATGACTCATGCTCGAGAATGGAGAAGCTCTTTGACTACTACT 169 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 131 AGGGTTTAGGTTTGGGATATGACTCATGCTCGAGAATGGAGAAGCTCTTTGACTACTACA 190 Query 170 CTTCTAATGGTGATCTTGCTTTCTCCTCTACTCCATCTCTTCTGTGTATATTCACGGGTA 229 |||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| Sbjct 191 CTTCTAATGGTGATCTTGCTTTCTTATATGCTCCATCTCTTCTGTGTATATTCACGGGTA 250 Query 230 GGGGCAATTCGGGTATTTCCAGTAACTCCGGCTCCGGCTAAGAGACAAGAAGA---TCTA 286 |||||||||||| ||||||||| |||||||||| ||| ||||||||||||||| |||| Sbjct 251 GGGGCAATTCGGATATTTCCAGAAACTCCGGCTTCGGGTAAGAGACAAGAAGAAGATCTA 310 Query 287 GTGAAGAAGTACTTCGGCGCCGGGAAATTTCCACCGGTGGATTCTTTTGTCGGAAAAGGG 346 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 311 ATGAAGAAGTACTTCGGCGCCGGGAAATTTCCACCGGTGGATTCTTTTGTCGGTAAAGGG 370 Query 347 ATCAGTGAGAGTAAGAGAATAGTACCAAGTTGTCCAGATCCTCTGCATAACTAGTAGAAG 406 |||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 371 ATCAGTGAGAGTAAAAGAATAGTACCAAGTTGTCCGGATCCTTTGCATAACTAGTAGAAG 430 Query 407 CAGTTTCTTGATGtttttttttttcatttttatttatatttt-CTTCTCTTGTTTATGTT 465 |||||||||||||| ||||||||| ||| |||||||||| ||||| | ||||||||| Sbjct 431 CAGTTTCTTGATGTGTTTTTTTTT--TTTGG-TTTATATTTTTCTTCT-T-GTTTATGTT 485 Query 466 AATGATCAATCAACTAGTGTATTTTACCCAAAATACCTACGTTTTTCTCGATAATATAAG 525 ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 486 AATGATCAACCAACTAGTGTATTTTACCCAAAATACCTACGTTTTTCTCGTTAATATAAG 545 Query 526 GGAAAAACGAGGGTATTTTGGATATTTTAATCACTGATCTATAACCTTTTCATATATA 583 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 546 GGAAAAACGAGGGTATTTTGGAGATTTTAATCACTGATCTATAACCATTTCATATATA 603 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28030654026 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5