BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484361
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25990.1 | Symbols: | Homeodomain-like superfamily protein ... 1912 0.0
AT1G13450.1 | Symbols: GT-1 | Homeodomain-like superfamily prot... 695 0.0
> AT3G25990.1 | Symbols: | Homeodomain-like superfamily protein
| chr3:9504677-9506787 REVERSE LENGTH=1372
Length=1372
Score = 1912 bits (1035), Expect = 0.0
Identities = 1247/1343 (93%), Gaps = 39/1343 (3%)
Strand=Plus/Plus
Query 1 TCTTTGACATCTTCTTCTATCTCTCCTTGTTCCTCGGAGAAAACATGTTTGTTTCCGAT- 59
||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 41 TCTTTGACATCTTCTGCTATCTCTCCTTCTTCCTTGGAGAAAACATGTTTGTTTCCGATA 100
Query 60 --AACAATCCTTCACGGGACATGAACCTGATGAT---CGATGTTACATCATCAAACGGAG 114
|||||||||||||||||||| ||| ||||||| ||||||| | ||||||||||||
Sbjct 101 ACAACAATCCTTCACGGGACATAAACATGATGATCGGCGATGTT--A-CATCAAACGGAG 157
Query 115 ATCTACCGATACAACAACAACAACATCATCAGATCATCCTCGGAGATAGCAGTGGAGGAG 174
| | | | ||| | | ||| | ||||||||||||||||| |||||||||||||
Sbjct 158 A--T--C--T---ACAGC--C-ACA-C--CAGATCATCCTCGGAGAAAGCAGTGGAGGAG 202
Query 175 AGGATCATGAGATCATCAAAGCACCAAAGAAACGAGCAGAGACATGGGCACAAGACGAGA 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 AGGATCATGAGATCATCAAAGCACCAAAGAAACGAGCAGAGACATGGGCACAAGACGAGA 262
Query 235 CTCGATGCTTAATCTCGTTACGGAGAGAAATGGACAATCTTTTCAACACATCTAAATCTA 294
||||| ||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 263 CTCGAACCTTAATCTCATTACGGAGAGAAATGGACAATCTTTTCAACACTTCCAAATCTA 322
Query 295 ACAAACATCTTTGGGAACAGATTTC-GAGCAAAATGAGAGAGAAAGGGTTTGATCGATCA 353
|||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 323 ACAAACATCTCTGGGAACAGATTTCTAAG-AAAATGAGAGAGAAAGGGTTTGATCGATCA 381
Query 354 CCAACTATGTGTACGGACAAGTGGAGGAACATATTGAAAGAGTTTAAGAAAGCTAAGTAT 413
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 CCATCTATGTGTACGGACAAGTGGAGGAACATATTGAAAGAGTTTAAGAAAGCTAAG--- 438
Query 414 CAAGATGATGATAAAGCAACAAGTGGAGGATCAACGAAGATGTCTTATTACAAAGAGATT 473
||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 439 CAACATGAAGATAAAGCAACAAGTGGAGGATCAACGAAGATGTCTTATTACAATGAGATT 498
Query 474 GAAGACATTTTTACAGAAAGAAACAAGAAAGTGGCCTTGTATAAGAGTCCTTCTACTACT 533
||||| ||||| | ||||||||| ||||||||||| || |||||||||||| ||||||||
Sbjct 499 GAAGATATTTTCAGAGAAAGAAAGAAGAAAGTGGCATTCTATAAGAGTCCTGCTACTACT 558
Query 534 ACTCCACCATCTTCTGCTAAAGTTGATTCCTTTATGCAATTTACTGATAAAGGTTTTGAA 593
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 559 A---CACCATCTTCTGCTAAAGTTGATTCCTTTATGCAATTTACAGATAAAGGTTTTGAA 615
Query 594 GATACTGGTATTCCATTTACATCTGTTGAAGCTAATGGCAGGCCAACGCTAAATCTTGAA 653
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 GATACTGGTATTTCATTTACATCTGTTGAAGCTAATGGCAGGCCAACGCTAAATCTTGAA 675
Query 654 ACGCAGCTTGATCATGATGGTCTTCCTCTCCCCATTGCTGCTGATCCCGTCACAGCAAAT 713
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 676 ACGGAGCTTGATCATGATGGTCTTCCTCTCCCCATTGCTGCTGATCCCATCACAGCAAAT 735
Query 714 GGAGTTCCTCCTTGGAGTTGGAGAGACACCGCTGGAAATGGGGGTGATGGTCAGCCATTT 773
|||||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||
Sbjct 736 GGAGTTCCTCCTTGGAATTGGAGAGACACCCCTGGAAATGGCGTTGATGGTCAGCCATTT 795
Query 774 GTTGGGAGGATCATAACAGTGAAATTTGGAGATTATACAAGAAGATTTGGGATTGATGGT 833
| ||||||||||||||| ||||||||||||||||| |||||| || ||||||||||||||
Sbjct 796 GCTGGGAGGATCATAACGGTGAAATTTGGAGATTACACAAGACGAGTTGGGATTGATGGT 855
Query 834 ACTGCTGAAGCAATCAAGGAAGCTATCAGATCCGCGTTTAGATTAAGAACAAGACGAGCT 893
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 856 ACTGCTGAAGCAATTAAGGAAGCTATCAGATCCGCGTTTAGATTGAGAACAAGACGAGCT 915
Query 894 TTTTGGCTAGAAGATGAAGAACAGGTTATTCGCTCTCTTGACCGAGACATGCCTTTAGGG 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 TTTTGGCTAGAAGATGAAGAACAGGTTATTCGCTCTCTTGACCGAGACATGCCTTTAGGG 975
Query 954 AACTATACACTCCGTGTTGATGAAGGGATAGCCGTTAGAGTGTGCCACTATGATGAATCT 1013
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 AACTATATACTCCGCATTGATGAAGGGATAGCCGTTAGAGTGTGCCACTATGATGAATCT 1035
Query 1014 GATCCGCTACCAGTCCATCAAGAGGAGAAGATATTCTACACCGAAGAAGATTACCGAGAT 1073
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 GATCCGTTACCAGTCCATCAAGAGGAGAAGATATTCTACACCGAAGAAGATTACCGAGAT 1095
Query 1074 TTCTTGGCTCGACGAGGATGGACATGTCTGAGAGAGTTTGACGCGTTTCGGAACATAGAC 1133
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1096 TTCTTGGCTCGACGAGGATGGACATGTCTGAGAGAGTTTGACGCGTTTCAAAACATAGAC 1155
Query 1134 AATATGGACGATCTTCAATCCGGT-GTCTTATACCGAGGAATGAGATGAGAAAACGGGT- 1191
||||||||||| |||||||||||| | ||||||| |||||||||||||||||||||| |
Sbjct 1156 AATATGGACGAGCTTCAATCCGGTCG-CTTATACAGAGGAATGAGATGAGAAAACGGTTA 1214
Query 1192 CTACAAAAGGCTAGAAGAAACCTTT-ATTTTTCATCAGTCACTGTAAATACACttttttt 1250
||||| ||||||||||||||||||| ||||||||||||||||| |||||| ||||||||
Sbjct 1215 CTACAGAAGGCTAGAAGAAACCTTTTATTTTTCATCAGTCACTATAAATAG-CTTTTTTT 1273
Query 1251 tATCCAAAA-ACCTTTATTTTCATCGGTCACTGTAAATATGCACCTCTTTTGACATTCCA 1309
|||||||| || |||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 1274 GATCCAAAATAC-TTTATTTTCATCAGTCACTGTACATATGCACCTCTTTTGACATGCCA 1332
Query 1310 TTGTGAATCAGAGAAATTTGATT 1332
||||||||||||| |||||||||
Sbjct 1333 TTGTGAATCAGAGGAATTTGATT 1355
> AT1G13450.1 | Symbols: GT-1 | Homeodomain-like superfamily protein
| chr1:4612731-4615205 REVERSE LENGTH=1579
Length=1579
Score = 695 bits (376), Expect = 0.0
Identities = 880/1108 (79%), Gaps = 96/1108 (9%)
Strand=Plus/Plus
Query 137 ACATCATCAGA-TCATCCTCGGAGATAGCAGTGGAGGAGAGGATCATG-AGATCATCAAA 194
||| || |||| || |||||||||| ||||||||| || | ||||| | || | | |||
Sbjct 273 ACAACAACAGATTC-TCCTCGGAGAAAGCAGTGGA-GA-A-GATCACGAAG-T--T-AAA 324
Query 195 GCACCAAAGAAACGAGCAGAGACATGGGCACAAGACGAGACTCGAT-GCTTAATC-TCGT 252
||||||||||||||||| |||||||||| |||||||| ||||| | |||||||| | ||
Sbjct 325 GCACCAAAGAAACGAGCGGAGACATGGGTTCAAGACGAAACTCG-TAGCTTAATCAT-GT 382
Query 253 TACGGAGAGAAATGGACAATCTT-TTCAACACATCTAAATCTAACAAACATCTTTGGGAA 311
| || |||| ||||| | || ||||| ||||| |||||||| |||||||| ||||||
Sbjct 383 TCCGTAGAGGTATGGATGGT-TTATTCAATACATCCAAATCTAATAAACATCTCTGGGAA 441
Query 312 CAGATTTCGAGC-AAAATGAGAGAGAAAGGGTTTGATCGATCACCAACTATGTGTACGGA 370
||||||||| | || |||||||| ||||||||||||||||| || ||||||||||| ||
Sbjct 442 CAGATTTCG-TCTAAGATGAGAGAAAAAGGGTTTGATCGATCTCCGACTATGTGTACTGA 500
Query 371 CAAGTGGAGGAA-CATATTGAAAGAGTTTAAGAAAGCTAAGTATCAAGATGATGATAAAG 429
|| |||||||| | | |||||||||||||||||||||||| | || |||||| ||
Sbjct 501 TAAATGGAGGAATC-TGTTGAAAGAGTTTAAGAAAGCTAAG---C---ATCATGATAGAG 553
Query 430 CAACAAGTGGAGGATCAACGAAGATGTCTTATTACAAAGAGATTGAAGACATTTTTACAG 489
| || | ||||| |||||||||| |||||||||||||||||||| ||| ||| ||
Sbjct 554 -GA-AA-T---GGATCGGCGAAGATGTCGTATTACAAAGAGATTGAAGATATTCTTAGAG 607
Query 490 AAAGAAACAAGAAAGTG------GC-C-TTGT-ATAAGAGTCCTTCTACTACTACTCCAC 540
| || | ||| |||||| | | | | ||||||| || ||| | ||| ||||
Sbjct 608 AGAGGAGCAAAAAAGTGACACCACCACAGTATAATAAGAG-CC--CTA--A-TACACCAC 661
Query 541 CAT-CTTCTGCTAAAGTTGATTCCTTTATGCAATTTACTGATAAAGGTTTTGAAGATACT 599
| | | || || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 662 C-TACATCAGCCAAAGTTGATTCCTTTATGCAATTTACTGATAAAGGTTTTGATGATAC- 719
Query 600 G-GTATTCCATTTACATCTGTTGAAGCTAATGGCAGGCCAACGCT-AAATCTTGAAACGC 657
| | ||| | ||| ||| ||||||||||||||||||||| | || ||| ||||||| ||
Sbjct 720 GAGCATTTCTTTTGGATCCGTTGAAGCTAATGGCAGGCCAGC-CTTAAACCTTGAAAGGC 778
Query 658 AG-CTTGATCATGATGGTCTTCCTCTCCCCATTGCT---GC--T-GATCCCGTCACAGCA 710
| |||||||||||||||| |||||| | || || || | ||| | || |||||
Sbjct 779 -GTCTTGATCATGATGGTCATCCTCTTGCAATCACTACAGCAGTTGATGCTGTTGCAGCA 837
Query 711 AATGGAGTTCCTCCTTGGAGTTGGAGAGACAC-CGCTGGAAATGGGG--G-T-G--ATGG 763
||||||||| ||||||||| ||||||||| || | ||||||| || | | | | ||||
Sbjct 838 AATGGAGTTACTCCTTGGAATTGGAGAGAGACTC-CTGGAAACGGTGATGATAGTCATGG 896
Query 764 TCAGCCATTTGTTGGGAGGATCATAACAGTGAAATTTGGAGATTATACAAGAAGATTTGG 823
|||||| |||| ||| ||| ||||||||||||||||||| || |||||||||||| | ||
Sbjct 897 TCAGCCTTTTGGTGGTAGGGTCATAACAGTGAAATTTGGTGACTATACAAGAAGAATCGG 956
Query 824 -GATTGATGGTACTGCTGAAGCAATCAAGGAAGCTA-TCAGATCCGCGTTTAGATTAAGA 881
| ||||||||| ||| ||||||||||| || | || ||||||| || ||| | ||||||
Sbjct 957 TG-TTGATGGTAGTGCAGAAGCAATCAAAGAGG-TAATCAGATCTGCTTTTGGGTTAAGA 1014
Query 882 ACAAGACGAGCTTTTTGGCTAGAAGATGAAGAACAGGTTATTCGCTCTCTTGACCGAGAC 941
|| || | ||||||||| ||||||||||||| ||| ||||||||| |||||||||||||
Sbjct 1015 ACTCGAAGGGCTTTTTGGTTAGAAGATGAAGATCAGATTATTCGCTGTCTTGACCGAGAC 1074
Query 942 ATGCCTTTAGGGAACTATAC-ACTCCGTGTTGATGAAGGGA-TAGCCGTTAGAGTGTGCC 999
||||| |||||||||||| | ||||||| | ||||| || | | ||| |||| || ||||
Sbjct 1075 ATGCCCTTAGGGAACTAT-CTACTCCGTCTGGATGATGG-ACTGGCCATTAGGGTTTGCC 1132
Query 1000 ACTATGATGAATCTGATCCGCT-ACCAGTCCAT-CAAGAGGAGAAGATATTCTACACCGA 1057
| ||||||||||| | || | |||||||||| || || ||||| || |||||||| ||
Sbjct 1133 ATTATGATGAATCCAA-CCAATTACCAGTCCATTCA-GAAGAGAAAATCTTCTACACTGA 1190
Query 1058 AGAAGATTACCGAGA-TTTCTTGGCTCGACGAGG-ATGGACATGTCTGAGAGAGTTTGAC 1115
|||||| ||||| || ||||| |||||||| ||| |||| || | ||| | |||| ||
Sbjct 1191 AGAAGACTACCGCGAGTTTCT-GGCTCGAC-AGGGATGGTCAAGCCTGC-A-AGTT-GAT 1245
Query 1116 GCGTTTC-GGAACATAGACAATATGGACGATCTTCAATCC-GGTGTCT-TATACCGAGGA 1172
| |||| |||||||||| || ||||| ||||||||| || |||| || | || |||||
Sbjct 1246 G-GTTTTAGGAACATAGAAAACATGGATGATCTTCAA-CCTGGTG-CTGTGTATCGAGGT 1302
Query 1173 ATGAGATGAGAAAACGGG-TCTACAAAA 1199
||||||||| ||| | | || ||||||
Sbjct 1303 GTGAGATGAGGAAATGAGATC-ACAAAA 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65561911770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5