BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484362
Length=2060
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26000.1 | Symbols: | Ribonuclease inhibitor | chr3:9506778... 2418 0.0
> AT3G26000.1 | Symbols: | Ribonuclease inhibitor | chr3:9506778-9509258
REVERSE LENGTH=2342
Length=2342
Score = 2418 bits (1309), Expect = 0.0
Identities = 1674/1839 (91%), Gaps = 69/1839 (4%)
Strand=Plus/Plus
Query 273 aaaaaaaaagggaaaaaaTCAGTTTTATTCAATTCATTCTTTTTGTGTTACCC-AATTTG 331
||||||||| || |||||||| |||||||||||||||||||||||||||||| |||| |
Sbjct 357 AAAAAAAAAAGG-AAAAATCAAATTTATTCAATTCATTCTTTTTGTGTTACCCAAATTCG 415
Query 332 GTTGTTAATACGTCTCAATTTCGAATTTCTTTTCTCTA-GGTTTTTTAGGGTTCCAAGGA 390
||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||
Sbjct 416 GTTGTTAATACGTCTCAATTTCGAATTTC-TTT-TCTAGGGTTTTTTAGGGTTCCAAGGA 473
Query 391 AGCTCTGAAAATTTCTGGTGCCTAGTAtttttttGTTGCCATCTGAAATCAAGAGTTTCC 450
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 AGCTCTCAAAATTTCTGGTGCCTAGTATTTTTTTGTTGCCATCTGAAATCAAGAGTTTCC 533
Query 451 tttttttCTGTCCATAGATC---T-A-TCGCCTTTCGA-TAACC------Caaaa-aa-- 495
||||||| |||||||||| | | || ||||||| || || |||| ||
Sbjct 534 --TTTTTCTCTCCATAGATCTATTAATTCATCTTTCGATTATCCAAAAAAAAAAATAACT 591
Query 496 ----a----a--TTCGGATCTGATCTATCTTC-TTAGGGGGGTTTTGAGttttttttCAG 544
| | |||||||||||||||||||| ||| |||||||||||| ||||| | ||
Sbjct 592 TTTTAGTTTATCTTCGGATCTGATCTATCTTCTTTA-GGGGGTTTTGAG-TTTTTCT-AG 648
Query 545 GGATTGTGTACAAAAGAGGGA-----tt--tttt-ttAGGTTTAAAGTGTATATAGAGAT 596
||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct 649 GGATTGTGTACAAAAGAGGGATTTTTTTGGTTTTGTTAGGTTTAAAGTGTATATAGAGA- 707
Query 597 TTAATAGAAATGGCTTTAAATTTTTCACATAGACCCTTTGCTTCTCATCTATCTGAGGAA 656
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 708 TTAATAGAAATGGCTTTAAATTTTTCACATAGACCTTTTTCTTCTCATCTATCTGAGGAA 767
Query 657 CCAATGAAGATAGCCAATGGGAATTGGTGTTCAAGTTTTGATAATGGAAGGAAGAGTAAT 716
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct 768 CCAATGATGATAGCCAATGGGAATTGGTGTTCAAGTTTCGATAATGGAAGGAAGAATACT 827
Query 717 ---GGAGATTCTTCTTCTGTTGACATACTTGATGTTTTGCCATCTGATCCGTTTGGTATG 773
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 828 GGAGGAGATGCTTCTTCTGTTGATATACTTGATGTTTTGCCATCTGATCCGTTTGGTATG 887
Query 774 GATATCAACAATACTTTCACGGCCATTACTGGATGGCTTGAGGATTT----G--GATTAT 827
||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||
Sbjct 888 GATATCAACAATACTTTCACGGCTATTACTGGATGGCTTGAGGATTTGGAGGATGATTAT 947
Query 828 AATAACCAATAT-G--GAAGAAGAAGTGATGACATTTGGATTGGTGATGGAAACCATCAG 884
|||||||||||| | |||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 948 AATAACCAATATGGAAGAAGAAGAAGAGATGACATTTGGATTGGTGATGGAAACCGTCAG 1007
Query 885 CAGCTCTTTGCTGGATTGAGTTTCATTTGGAACAATGCAATGCAGTTTCAGAGTAGTGGG 944
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1008 CAGCTGTTTGCTGGATTGAGTTTCTTTTGGAACAATGCAATGCAGTTTCAGAGTAGTGGT 1067
Query 945 TATAGTAATGGATCGGAGTCGTTGTATGGGTTTGGTGGGGCATTTGATGGGTCTTTGTTT 1004
|| ||| ||||||| ||||| || |||||||||||| |||||||||||| |||||
Sbjct 1068 TACAGTTATGGATCAGAGTC-----AT-TGTTTGGTGGGGCGTTTGATGGGTCTCTGTTT 1121
Query 1005 TCCGCATGTAAATTCCCGGAGAGTAGTGGGGACAATAATGTGTTTGGAGGAGCATTTGAT 1064
||| ||||||||||||| || ||||||||||| ||||||| ||||||||| ||||| |||
Sbjct 1122 TCCACATGTAAATTCCCTGAAAGTAGTGGGGAAAATAATGGGTTTGGAGGGGCATTAGAT 1181
Query 1065 GGTGATGGATCTTGTCATGGTGCTTTCATATCTGCTAGTAGTGTTGATGAGGTATTGAGC 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 GGTGATGGATCTTGTCATGGTGCTTTCATATCTGCTAGTAGTGTTGATGAGGTATTGAGC 1241
Query 1125 CTTGAGGATGCGAGGAATGGTGGAGTTGTAGGAAGTAGTGATCGCTACAATAATGGAGGC 1184
| |||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1242 CATGAGAATGCGAGGAATGGTGAAGTTGTAGGAAGTAGTGATCGCTGCAATAATGGAGAA 1301
Query 1185 GAGGATGCAAATGTTCATCCAGCGTTTGGTTTTTGTCTTTATCACTTGGGAGTGAAGGAT 1244
|||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 1302 GAGGATGCGTATGTTCATCCAGCGATTGGTTTTTGTCTTTATCACTTGCGAGGGAAGGAT 1361
Query 1245 CTTCTTTCAGTTAGTATGGTTTGCAAGTCTCTGCATACTACTGTTTGTGATGACTCGTTA 1304
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1362 CTTCTTTCAGTTAGTATGGTTTGCAAGTCTTTGCATACTACTGTTTGTGATGACACGTTA 1421
Query 1305 -TTGTGGAAGCATATCCACATTTGTCAACCGTTGAATGAGAAGATTACGGAAGAGGCTCT 1363
|| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1422 CTT-TGGAAGCATATCCACATTTGTCGACCGTTGAATGAGAAGATCACGGAAGAGGCTCT 1480
Query 1364 GCTGCATTTAACTGAGAGGGCTCAGGGTACTATGCAGTGTTTGAGGCTTGTAGATTGCTG 1423
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1481 ACTGCATTTAACTGAGAGGGCTCAGGGTACTATGCAGTGTTTGAGGATCGTAGATTGCTG 1540
Query 1424 TAGAATTACAGATGATTGTCTTAAGCGGGTGTTGGAGCGCAACCCACAAGTAGTCAAGCT 1483
||||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||| |
Sbjct 1541 TAGAATTACTGATGATTGTCTTAAGCGGGTGGTGGCGCGCAACCGACAAGTAGTCAAGAT 1600
Query 1484 TGGTGTGCCTGGATGCACAAGGATCACTATCGACGGTATTTTGAGCATCTTGAGGGATCT 1543
|||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||
Sbjct 1601 TGGTGTGCCTGGATGCACAAGGATAACTATCGATGGTATTTTGAGCGTCTTGAGGGATCT 1660
Query 1544 GAAGTCTGTGGGAAAGCTTCAAGTGAAGCATTTAGAAATTGGTGGCCTCTTTGGTGTTAC 1603
|||||||| ||||||||||||||||||||||||| || || ||||||||||||| || ||
Sbjct 1661 GAAGTCTGCGGGAAAGCTTCAAGTGAAGCATTTACAACTTCGTGGCCTCTTTGGAGTGAC 1720
Query 1604 GAAAGATCACTACGATGAATTGTTTGACTTGTTGAACATAGACAATAAAGTCGAGCAGAC 1663
|||||||||||||||||| || |||||||||||||||| |||||||||||| |||||||
Sbjct 1721 TAAAGATCACTACGATGAACTGATTGACTTGTTGAACATTGACAATAAAGTCAAGCAGAC 1780
Query 1664 TATTCAGAAGCCGCGTTTTTACCATAGAGGAGATGCATGTGTGTCCTGTGATGATGACCG 1723
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1781 TATTCAGAAGCCGCGTTTTTACCATAGAGGAGAAGCTTGTGTGTCCTGTGATGATGACCG 1840
Query 1724 GGCGCTAGATATTGAGATGTGCCCAAAGTGTCAGAATTCTA-GACTTGTGTATGACTGTC 1782
||| ||||||||||||||||||||||||||||| |||| || | ||||||||||||||||
Sbjct 1841 GGCACTAGATATTGAGATGTGCCCAAAGTGTCAAAATTTTAAG-CTTGTGTATGACTGTC 1899
Query 1783 CAGCTGAAGATTGTAAAGGGAAAAAGGAAGGTTCTGAGGAATGCCGGGCTTGTTCTCTTT 1842
|||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1900 CAGCAGAAGATTGTAAAGGGAAAAAGAAAGGTTCTGAGGAATGCCGTGCTTGTTCTCTTT 1959
Query 1843 GCATACAGAGGTGTTATCACTGTGGTCGGTGCATCAATGACAGC-GAATACGAAGAAACG 1901
||||||||||||||||||| |||||||||||||||| ||||| | ||||||||||||| |
Sbjct 1960 GCATACAGAGGTGTTATCATTGTGGTCGGTGCATCATTGACA-CTGAATACGAAGAAATG 2018
Query 1902 TTTTGTCTAGAGTTTTTGTGTGCTGTTTGTTCGAAGCCGGCCCCTAAGTTAACTCTCTAG 1961
|||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2019 TTTTGTTTAGAGCTTTTGTGTGCTGTTTGTTCGAAGCCGACCCCTAAGTTAACTCTCTAG 2078
Query 1962 GTATAAAATTCCATCTGAGCCTTTCTTTTCTATATGATTGAATGGTTCAGTCTCCATGGC 2021
|||||||||||||||||||||||||| |||| |||||||||||| |||||||||| ||
Sbjct 2079 GTATAAAATTCCATCTGAGCCTTTCTCTTCTCTATGATTGAATGACTCAGTCTCCACGGT 2138
Query 2022 TCAATGGAGATGATCTTCAACTATCTCTAGAAACTTTTT 2060
|||||||||||||||||||||||||||||||| ||||||
Sbjct 2139 TCAATGGAGATGATCTTCAACTATCTCTAGAACCTTTTT 2177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102107908530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5