BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484366
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26040.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2106 0.0
> AT3G26040.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr3:9519741-9521070 FORWARD LENGTH=1330
Length=1330
Score = 2106 bits (1140), Expect = 0.0
Identities = 1270/1333 (95%), Gaps = 8/1333 (1%)
Strand=Plus/Plus
Query 1 ATGAGAGTTGATGTTATCTCCAGAGATATCATCAAACCGTCATCTCCAACTCCAAACCAC 60
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGAGAGTTGATGTTGTCTCCAGAGATATCATCAAACCATCATCTCCAACTCCAAACCAC 60
Query 61 TTAAAGAAGTTTCAACTCTCTCTTTTAGAACAGCTCGGTCCAACGATCTTTGGTCCTATG 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAAAGAAGTTTAAACTCTCTCTTTTAGAACAGCTCGGTCCAACGATCTTTGGTCCTATG 120
Query 121 GTTTTCTTCTATTCAGGTAACAACAGAATCAAACCAGCTGAGCAATTGCAGAAGCTGAAG 180
|||||||||||||||| ||||||||| ||||||||| ||||||||||||||| |||||||
Sbjct 121 GTTTTCTTCTATTCAGCTAACAACAGCATCAAACCAACTGAGCAATTGCAGATGCTGAAG 180
Query 181 AAGTCGTTATCTGAAACTTTAACCCATTTCTACCCTCTCGCTGGACGGCTCAAAGGCAAC 240
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGTCGTTATCCGAAACTTTAACTCATTTCTACCCTCTCGCTGGACGGCTCAAAGGCAAC 240
Query 241 ATAAGTATCGATTGTAATGACTCCGGCGCTGATTTCCTCGAAGCA-GAAGTCAATTCCCC 299
||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| ||
Sbjct 241 ATAAGTATCGATTGTAATGACTCAGGCGCTGATTTCCTCGAAGCACG-AGTCAATTCACC 299
Query 300 GCTTTCGAGTCTCCTACAAGAGCCTTCTTCGGACAGCTTGCAACAACTGATTCCTACATC 359
|||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 GCTTTCGAATCTCCTACTAGAGCCTTCTTCTGACAGCTTGCAACAACTGATTCCTACATC 359
Query 360 AGTTGATTCCATAGAGACAAGAACCAGACTGTTTCTTGCTCAAGCTAGTTTCTTTGAATG 419
|||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||
Sbjct 360 TGTTGATTCCATAGAGACACGAACCAGACTGCTTCTTGCTCAAGCGAGTTTCTTTGAATG 419
Query 420 TGGAAGCATGGCTATAGGAGTTTGTATCTCTCATAAACTCGCTGACGCAACTTCTATCGG 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGGAAGCATGTCTATAGGAGTTTGTATCTCTCATAAACTCGCTGACGCAACTTCTATCGG 479
Query 480 TTTATTCATGAAGAGCTGGGCTGCAATCTCGTCCCAAGGATCAATCAAAACCGTTGG-GT 538
||||||||||||||||||||||||||||||||||| ||| || ||||||||| |||| |
Sbjct 480 TTTATTCATGAAGAGCTGGGCTGCAATCTCGTCCCGAGGGTCGATCAAAACCATTGGAG- 538
Query 539 TTCCAGTGTTT-GACACGGCCAAGATCTTCCCACCTGGAAACTTCTCTGAGACTTCCCCT 597
||| || ||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 539 CTCCGGT-TTTCGACACGGTTAAGATCTTCCCACCTGGAAACTTCTCTGAGACTTCCCCT 597
Query 598 GCACCAGTGGTTGAGCCAGAGATCATGATGAATCAGACTCTTTCGAAGAGATTTGTATTC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 598 GCACCAGTGGTTGAGCCAGAGATCATGATGAATCAGACTCTTTCGAAGAGATTCATATTC 657
Query 658 GATTCTTCGAGCATTCAAGCCCTGCAAGCAAAAGCTTCAAGCTTTGAAGTGAATCAACCT 717
||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 658 GATTCTTCGAGTATTCAAGCTCTGCAAGCGAAAGCTTCAAGCTTTGAAGTGAATCAACCA 717
Query 718 ACAAGAGTCGAAGCTGTTTCAGCTCTTATATGGAAAACTGCAATGAAAGCTACAAGAACA 777
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 718 ACAAGAGTCGAAGCTGTTTCAGCTCTTATATGGAAATCTGCAATGAAAGCTACAAGAACA 777
Query 778 GTTTCAGGAACATCGAAACCGTCGATTCTGGCTAACTCCGCGAGTCTACGCTCACGCGTC 837
||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| |||
Sbjct 778 GTTTCAGGAACATCGAAACCGTCAATTCTGGCAAACTCCGTGAGTCTACGCTCACGAGTC 837
Query 838 TCTCCACCATTCACAAAGAACTCAATCGGGAATCTAGTGAGCTACTTTGCAGCAAAAGCA 897
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 838 TCTCCACCATTTACAAAGAACTCAATAGGGAATCTAGTGAGCTACTTTGCAGCAAAAGCA 897
Query 898 GAGGAAGGAACAAACCAAACAAAGCTTCAAACTTTGGTTTCGAAAATACGAAAAGCGAAA 957
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GAGGAAGGAATAAACCAAACAAAGCTTCAAACTTTGGTTTCGAAAATACGAAAAGCGAAA 957
Query 958 CAGTGGTTTCGCGATAACCATATACCAAAGCTTGTAGGAAACCCAAATGCTACAGAGATC 1017
||| ||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 958 CAGAGGTTTCGAGATATCCATATACCAAAGCTTGTAGGAAACCCAAATGCCACAGAGATC 1017
Query 1018 ATTTGTAGCTACCAGAAAGAAGCAGGAGATATGATTGCAAGTGGAGATTTCGATTTCTAC 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ATTTGTAGCTACCAGAAAGAAGCAGGAGATATGATTGCAAGTGGAGATTTCGATTTCTAC 1077
Query 1078 ATCTTCTCGAGTGCTTGTCGGTTCGGTTTATACGATACCGATTTCGGTTGGGGAAAACCG 1137
|| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1078 ATATTCTCAAGTGCTTGTCGATTCGGTTTATACGAAACCGATTTCGGTTGGGGAAAACCG 1137
Query 1138 GTTTGGGTCGGGATTCCTACGGTTAGACAGAAGAACATCGTGACGCTTCTCGACACGAAA 1197
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GTTTGGGTCGGGTTTCCTTCGGTTAGACAGAAGAACATCGTGACGCTTCTCGACACGAAA 1197
Query 1198 GAAGCTGGTGGAATCGAAGCTTGGGTGAATCT-ATATGAACAAGAGATGAATCTTTTTGA 1256
|||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1198 GAAGCTGGTGGAATTGAAGCTTGGGTGAATCTGA-ATGAACAAGAGATGAATCTTTTTGA 1256
Query 1257 ACAAGATAGAGAATTGCTCCAATTCGCTTCTCTGAATCCTAGGGTGATCCAACCTTTTCT 1316
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1257 ACAAGATAGAGAATTGCTCCAATTCGCTTCTCTGAATCCTAGTGTGATCCAACCTTTTCT 1316
Query 1317 CCATGTTCTTTGA 1329
|||||||| |||
Sbjct 1317 TCATGTTCTCTGA 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5