BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484367
Length=1947
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26050.1 | Symbols: | TPX2 (targeting protein for Xklp2) pr... 2104 0.0
AT3G01710.1 | Symbols: | TPX2 (targeting protein for Xklp2) pr... 84.2 4e-15
AT5G40700.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 80.5 6e-14
> AT3G26050.1 | Symbols: | TPX2 (targeting protein for Xklp2)
protein family | chr3:9521782-9524552 FORWARD LENGTH=2038
Length=2038
Score = 2104 bits (1139), Expect = 0.0
Identities = 1780/2062 (86%), Gaps = 154/2062 (7%)
Strand=Plus/Plus
Query 1 ACTTTCAGATTTGCAGCC---G---AAGAAGCT--TTAAGATTTTTTAGTTTTCAGTTTC 52
|||||||||||||||||| | |||||||| ||||||||| |||||||||||||
Sbjct 1 ACTTTCAGATTTGCAGCCAAAGAAAAAGAAGCTAACAAAGATTTTTCAGTTTTCAGTTTC 60
Query 53 TCAGCGAAACCACCAGATTTGGGGATAAAATTAGGGTTTTTGGATCTCC--AG--AACAA 108
||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct 61 TCAGCGAAACCACCAGATTTGGGGATAAAATTAGGGTTTTTCGATCTCCAGAGAAAACAA 120
Query 109 AAAAGAATGGGAGAATCAATTTGCT-TTGTGAGATCTTTCTCGCAAGCTGCAGAGTTTTC 167
|||| |||||||||||||||||| | |||||||||||||||||||| || ||||||||||
Sbjct 121 AAAA-AATGGGAGAATCAATTTG-TCTTGTGAGATCTTTCTCGCAACCTTCAGAGTTTTC 178
Query 168 ATCGCATCAAATCAACAACGAGGTGGTTCCTAATCGTGTGCTTACGGAATCGGTATCGTT 227
||||| | |||| |||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct 179 ATCGCGTGAAAT---CAACGAGGTGGTACCGAATCGAGTGCTTACGGAATCAGTATCGTT 235
Query 228 TGGTAGATTTGCGAATGAAACACTAGCGTGGGAGAGATGGTCAGCTTTTACTCAGAATCG 287
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 236 TGGTAGATATGCGAATGAAACACTAGCGTGGGCGAGATGGTCAGCTTTTACTCAGAATCG 295
Query 288 TTACTTGGAAGAGGTTGAGAGGTTTACTAAACCTGGTTCTGTGGCTCAGAAGAAAGCTTT 347
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 296 TTACTTGGAAGAGGTTGAGAGGTTTACTAAACCTGGTTCTGTAGCAGAGAAGAAAGCTTT 355
Query 348 CTTTGAAGCTCATTTCAAGAACAGAGCTTCCGGG--AG-AGTAACGGAGCCGAAAAAGAT 404
|||||||||||||||||||||| ||||||| ||| || || ||| || |||| |||||
Sbjct 356 CTTTGAAGCTCATTTCAAGAACCGAGCTTCAGGGAAAGCAGCAACACAGACGAAGAAGAT 415
Query 405 CG---AAG--AA-GTTGAAA-CCGGTGATGAGATTGTATGTGAGATACCAAAGGATATTC 457
| ||| || ||| ||| ||| ||||||||| ||||| ||||| ||||||||||
Sbjct 416 TGAACAAGTAAAGGTT-AAAGATAGTGTTGAGATTGTTTGTGATATACCTAAGGATATTC 474
Query 458 TCGTTGATTCAGAAGTA--AC-A-C------T--AGTGGTGTCTAACGGTGAGGTGGA-- 503
||||||||||||||||| || | | | || |||||||| |||||||||
Sbjct 475 TCGTTGATTCAGAAGTACCACTAGCGGTGAATAGAGAGGTGTCTAGTAATGAGGTGGACT 534
Query 504 ----TG---AAACAA---CTG--AT-G-TGAAAACTGGTGAAGTGGAGAACTTGAAGTCA 549
|| | ||| ||| || | || |||||||| ||||||||||||||||||||
Sbjct 535 CTGTTGTTCCATCAATTTCTGTAATAGATG-AAACTGGTAAAGTGGAGAACTTGAAGTCA 593
Query 550 ------G----TG--GA--G-AATTCTACTTCTTTGAGCAAAGAAAGACCTCCTAGTTCT 594
| || || | |||||||||||||||||||||||||||||||||||||||
Sbjct 594 GTGGTTGTTCCTGATGAGGGCAATTCTACTTCTTTGAGCAAAGAAAGACCTCCTAGTTCT 653
Query 595 TCTGAATCGAAGGTCTCAAGTTCAAAACTGGAACCTTCCGTTGTTATAGAACTGGATCAT 654
|| | ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 654 TCCGGATCGAAGGTCTCAAGCTCAAAACTGGAATCTTCCGTTGTTATAGAACTGGATCAT 713
Query 655 TCACTTAACAACACTAGAAAAGAGTCATCCTTGAGTAGTACAAGGTCACTTAGTGTATCG 714
|||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 714 TCACTTAAGAACACTAAAAAAGAGTCATCCTCGAGTAGTACAAGGTCACTTAGTGCATCG 773
Query 715 AAGAACCGAAGTAGATCACCTCCTCAATCCGTTCACATGTCAATCAGCTGTGCTCCTTCT 774
|||||||||||||||||||||||| | || ||||||||||||||||||||| | |||||
Sbjct 774 AAGAACCGAAGTAGATCACCTCCTGAGCCCATTCACATGTCAATCAGCTGTGTTTCTTCT 833
Query 775 GGTAGTACCGACaaaaaaaTTGTCAGGATGCCCCAAAACGGTGCTAAGAGTGCAGTGAAA 834
||| |||||| |||| ||||| ||| |||||| |||||| ||| |||||||||||||
Sbjct 834 AGTAATACCGAGAAAACTATTGTGGGGAGGCCCCAGAACGGTTCTAGGAGTGCAGTGAAA 893
Query 835 GCAGACAAGAAGAAGAGATCATGTCCAAGTTCAGTTCACATGTCACTCAATTTTGCTTCT 894
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 894 GCAGACAAGAAGAAGAGATCAGGTCCAAGTTCAGTTCACATGTCACTCAATTTTGCTTCT 953
Query 895 TCTGCTCGTCATACGACCAAAGCAGCCTCGAAAAC-CTTGGTAAGAAACTCCACTACACA 953
||| ||| || ||||||||||| |||| | ||||| || || ||||||||||||||||||
Sbjct 954 TCTACTCTTCGTACGACCAAAGAAGCCCCAAAAACACT-GGCAAGAAACTCCACTACACA 1012
Query 954 GGAAACAACTTCATCAAATGCTAGAAACAAAGTTTTCCCAAAGACAAACGAACCAACGGG 1013
|| |||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1013 GGGAACAACTTCAACAAATGCTAGAAACAAACTTTTCCCAAAGATAAACGAACCAACGGG 1072
Query 1014 AGCTTCAAAAAGCCGCAAGAGACCATTGTCTCAAACATCCAAAGAAGGTTCTAAAGCTGC 1073
||||| ||||||| ||||||||||||||||||| ||||||||||| ||||| || | |
Sbjct 1073 AGCTTTAAAAAGCTGCAAGAGACCATTGTCTCAGACATCCAAAGACGGTTC-AA--C--C 1127
Query 1074 AAAATGTTCAACCAGTGCCTCTGCTGTCACGTTACCC-GAACTTCCTCCTCTCAGTAAGC 1132
|| || | | | | | ||||||||||||||| || ||||||| ||||||||| |
Sbjct 1128 AA--TG--C--C---T-C-T--GCTGTCACGTTACCCAGA-CTTCCTCTTCTCAGTAATC 1173
Query 1133 AGCTATCAGAAAACAAAAGGAAAAACATAACTGTAGGGAGATTAA-TTTCATGCAGAATA 1191
|||||||||||||||||||||||||||| ||||| |||| || | ||||||| ||||||
Sbjct 1174 TGCTATCAGAAAACAAAAGGAAAAACATATCTGTAAGGAG-TTCAGTTTCATGTAGAATA 1232
Query 1192 CCCAACAATGTGCAAA-AACAACCCCCTGTCGGCTGTGAAAATCTTTCAACTCATAGCAG 1250
||||||||| ||||| || |||| ||||||||||||||||||| ||||||||||||||
Sbjct 1233 TCCAACAATGAGCAAAGAA-AACCTTCTGTCGGCTGTGAAAATCTGTCAACTCATAGCAG 1291
Query 1251 AAGCAAAGCAAAGTCTTTGACTGTATCTTCTCCCTTCATCTTCagaagtgatgaaagagc 1310
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1292 AACCAAAGCAAAGTCTTTGACTGTATCTTCTCCCTTCGTCTTCAGAAGTGATGAAAGGGC 1351
Query 1311 agagaagaggaaagagttcttcaagaaggtagaagaaaagaacaagaaagaggaaactgg 1370
||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||| |
Sbjct 1352 AGAGAAGAGGAAAGAGTTCTTCAAGAAAGTAGAGGAAAAAAACAAGAAAGAG-AAA--G- 1407
Query 1371 aaaagaTAAATTTTCTTGCGGCTTCAAGGCAAATCAAAACACTCACTTAGCATCTGAAGA 1430
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1408 AG--GATAAATTTTCTTGCGGCTTCAAGGCAAATCAAAACACTAACTTAGCATCTGAAGA 1465
Query 1431 ACACAAGAAGAACCCACAAGTTGGTGGTTTTCAGGTACCACCGATAACCATGACTTCACC 1490
||||||||| ||||||||||||||||||||||||| ||||||| ||| ||||||||||
Sbjct 1466 ACACAAGAA---CCCACAAGTTGGTGGTTTTCAGGTAACACCGATGACCCTGACTTCACC 1522
Query 1491 AAGATTCCGCAGGAACCAAACTCCAGGAAAAAAGAACATAAAAA--C-TC--C---C-C- 1540
||||||||||||||||||||||||||||||| |||||||||||| | || | | |
Sbjct 1523 AAGATTCCGCAGGAACCAAACTCCAGGAAAAGAGAACATAAAAAAACCTCATCAAACTCC 1582
Query 1541 --ATAAAGCTTCCTCAATGAAGATCATAAACACCAAAAAAGTAGTCATGGAGAAACAAAA 1598
||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 1583 TCATAAAGCTTCCTCAATGAAGATCATCAACACCAAAAAAGTAGTCATGGAGAAGCACAA 1642
Query 1599 AAGCAGCAAGATTCATCCCTCCTCCAAACCA-CAGACACCaaaaaaaaCTCAAGAAAATA 1657
|||||||||||| |||||||||||||||| | |||||| |||||| ||||||||||||||
Sbjct 1643 AAGCAGCAAGATCCATCCCTCCTCCAAAC-AGCAGACAACAAAAAGAACTCAAGAAAATA 1701
Query 1658 TGTCTCCTAATATTCTACAGAACTAAGCAGAGACAAACCCGATCAATC-ATTCCTCTTCT 1716
|||||||||||||||| ||||||||| |||||||||||| |||||||| |||||||||||
Sbjct 1702 TGTCTCCTAATATTCTTCAGAACTAACCAGAGACAAACCAGATCAATCGATTCCTCTTCT 1761
Query 1717 TCAAACCTCTAGTTCATCGTAAAGATTCGGCTTTTCGCGTTGAAGATTCCGAAAGTTTTG 1776
|||| |||||| |||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct 1762 TCAAGTCTCTAGATCATCGTAAAGATTCGACTTTTCACTTTGAAGATTCCGAAAGTTTTG 1821
Query 1777 TCCTTTCAGCTCGTAATCTCATCTCAAGCTTATGGTATAGGTAACTAGCCCTT-A---A- 1831
||| ||||||| |||||||||||||||||||||||| ||||| |||||||||| | |
Sbjct 1822 TCCCTTCAGCTAGTAATCTCATCTCAAGCTTATGGTTTAGGTGACTAGCCCTTGATTCAG 1881
Query 1832 -TTG---AACCACAAGCTTTTAAGGAGCTGTGTAGAATAGATAGAACTCAA--CTA-T-- 1882
||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1882 ATTGTGTAACCACAAGCTTTTAAGGAGCTGTGTAGAATAGATAGAACTCAAGTCTACTTA 1941
Query 1883 ---------GTA-CT-----C--AATAGTTCTGTTGTCTCAATCTTGTATCATTTGTCTA 1925
||| || | ||||||||||| || ||||||||||||||||||| ||
Sbjct 1942 CTCTTCAAAGTAACTATGTACTCAATAGTTCTGTAGTATCAATCTTGTATCATTTGTATA 2001
Query 1926 CATAGAGATATGAAATAAAGAA 1947
||||||||| ||||||||||||
Sbjct 2002 CATAGAGATTTGAAATAAAGAA 2023
> AT3G01710.1 | Symbols: | TPX2 (targeting protein for Xklp2)
protein family | chr3:259639-261840 REVERSE LENGTH=1591
Length=1591
Score = 84.2 bits (45), Expect = 4e-15
Identities = 94/117 (80%), Gaps = 5/117 (4%)
Strand=Plus/Plus
Query 256 TGGGAGAGATGGTCAGCTTT-T--ACTCAGAATCGTTACTTGGAAGAGGTTGAGAGGT-T 311
||||||| |||||| ||||| | || ||||| | |||| ||| |||| ||||| |
Sbjct 220 TGGGAGAAATGGTCTGCTTTCTCCACACAGAACCCTTACGTGGCTGAGGCAGAGAGATAC 279
Query 312 TACTAAACCTGGTTCTGTGGCTCAGAAGAAAGCTTTCTTTGAAGCTCATTTCAAGAA 368
| |||| || || ||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 280 T-CTAAGCCCGGATCTGTTGCTCAGAAGAAAGCTTTCTTTGAAGCTCACTACAAGAA 335
> AT5G40700.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G27350.1);
Has 475 Blast hits to 414 proteins in 93 species: Archae -
0; Bacteria - 43; Metazoa - 127; Fungi - 17; Plants - 143;
Viruses - 7; Other Eukaryotes - 138 (source: NCBI BLink). |
chr5:16291890-16293512 REVERSE LENGTH=1138
Length=1138
Score = 80.5 bits (43), Expect = 6e-14
Identities = 64/74 (86%), Gaps = 2/74 (3%)
Strand=Plus/Plus
Query 303 TGAGAGGTT-TACTAAACCTGGTTCTGTGGCTCAGAAGAAAGCTTTCTTTGAAGCTCATT 361
||||| ||| | || | ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 255 TGAGAAGTTCT-CTCAGCCTGGATCTGTTGCTCAGAAGAAAGCTTTCTTTGAAGCTCATT 313
Query 362 TCAAGAACAGAGCT 375
|||||| | ||||
Sbjct 314 ACAAGAAAATAGCT 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96435246945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5