BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484368
Length=875
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26060.2 | Symbols: ATPRX Q | Thioredoxin superfamily protei... 1282 0.0
> AT3G26060.2 | Symbols: ATPRX Q | Thioredoxin superfamily protein
| chr3:9524725-9526407 FORWARD LENGTH=1020
Length=1020
Score = 1282 bits (694), Expect = 0.0
Identities = 836/900 (93%), Gaps = 27/900 (3%)
Strand=Plus/Plus
Query 1 TTCTTCTACT-CTATGCTCTAACCACGTCCTTGTAGAGGAAAAGaaaaaaaaTGGCTGCT 59
|||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 33 TTCTTCTACTAC-ATGCTCTAATCACGTCCTTGTAGAGGAAAAGAAAAAAAATGGCTGCT 91
Query 60 TCATCTTCCTCTTTCACTCTCTGTAATCACACCACACTTCACACTCTCCCTCAGAGAAAG 119
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 92 TCATCTTCCTCTTTCACTCTCTGTAATCACACCACACTTCGTACTCTCCCTCTGAGAAAG 151
Query 120 ACCCTTGTCACCAAAACCCATTTTTCCGTTCCCACAAAATCATCAGAATCTAATTTCTTT 179
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 152 ACCCTTGTCACCAAAACCCAATTTTCAGTTCCCACAAAATCATCAGAATCTAACTTCTTT 211
Query 180 GGCTCCAGACTCACTCACTCGTCGTATCTCTCCCCAGTCTCTTCCTCTTCTCTCAAAAGC 239
||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| ||
Sbjct 212 GGCTCCACACTCACTCACTCATCGTATATCTCCCCAGTCTCTTCCTCTTCTCTCAAAGGC 271
Query 240 TTAATCTTTGCC-A--AGGTTAACAAGGGTCAGGCTGCACCAGACTTCACATTGAAGGAT 296
|||||||||||| | ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 272 TTAATCTTTGCCAAGCAGGTTAACAAGGGTCAGGCTGCACCAGACTTCACACTAAAGGAT 331
Query 297 CAGAACGGAAAGCCGGTGAGCCTCAAAAAGTATAAAGGGAAGCCTGTTGTTCTCTACTTC 356
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 CAAAACGGAAAGCCGGTGAGCCTCAAAAAGTATAAAGGGAAGCCTGTTGTTCTCTACTTC 391
Query 357 TACCCTGCAGATGAAACCCCTGGCTGCACCAAACAGGCTTGTGCTTTCAGAGACTCTTAT 416
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 392 TACCCTGCAGATGAAACCCCTGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTAT 451
Query 417 GAGAAATTCAAGAAAGCCGGTGCAGAGGTCATTGGGATTAGTGGTGATGACTCTGCTTCT 476
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 452 GAGAAATTCAAGAAAGCTGGTGCAGAGGTCATTGGCATTAGTGGAGATGACTCTGCTTCT 511
Query 477 CACAAGGCGTTTGCAAGCAAATACAAACTCCCGTATACATTGTTAAGCGACGAAGGGAAT 536
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 512 CACAAGGCGTTTGCAAGCAAATACAAACTACCGTATACATTGTTAAGCGACGAAGGGAAT 571
Query 537 AAGGTGAGAAAAGATTGGGGAGTACCAGGAGACTTGTTTGGGGCATTGCCAGGGAGACAA 596
||||||||||||||||||||||| || |||||| ||||||| |||||||||||||||||
Sbjct 572 AAGGTGAGAAAAGATTGGGGAGTGCCTGGAGACCTGTTTGGAGCATTGCCAGGGAGACAG 631
Query 597 ACTTACGTCCTTGACAAAAACGGTGTTGTTCAGCTCATCTACAACAACCAGTTCCAGCCT 656
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 ACTTACGTTCTTGACAAAAACGGTGTTGTTCAGCTCATCTACAACAACCAGTTCCAGCCT 691
Query 657 GAGAAACACATCGACGAGACCTTGAAGTTTCTTAAAGCTGCTTGATCATTCTCTCTTTCT 716
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 692 GAGAAACACATCGACGAGACCTTGAAGTTTCTCAAAGCTGCTTGATCATTCTCTCTTTCT 751
Query 717 CTT--------------ATGCATGTCTCATGTCTGGCTCCATGA--CCTT--CC--C--A 754
||| |||||||||||||||||| |||||||| || | || | |
Sbjct 752 CTTCTTTCTCTTCTTTCATGCATGTCTCATGTCTGTCTCCATGAGACCATGACCTTCTTA 811
Query 755 TACTGTTTCTTTTGATTATGAATTTTCAATAATACCATGTTATACCAATGAGAAGAGAGT 814
|| ||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 812 TATTGTTTCTGTTGAGTATGAATTTTCAATAATACCATGTTATACCAATGAGAAGGGAGT 871
Query 815 TGGCTTTGGTCTGGTAAAAAGATCACAACGGGATAAGTATTGAAGAGTGGTTAAAATGTT 874
|||||||||||| ||| |||||||||||| ||||||||| ||||| ||||||||||||||
Sbjct 872 TGGCTTTGGTCTAGTACAAAGATCACAACAGGATAAGTACTGAAGTGTGGTTAAAATGTT 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42699024950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5