BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484369
Length=1190
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26070.1 | Symbols: | Plastid-lipid associated protein PAP ... 1539 0.0
AT3G26080.1 | Symbols: | plastid-lipid associated protein PAP ... 813 0.0
AT3G26060.2 | Symbols: ATPRX Q | Thioredoxin superfamily protei... 76.8 4e-13
> AT3G26070.1 | Symbols: | Plastid-lipid associated protein PAP
/ fibrillin family protein | chr3:9526714-9528583 FORWARD
LENGTH=1303
Length=1303
Score = 1539 bits (833), Expect = 0.0
Identities = 1050/1148 (91%), Gaps = 41/1148 (4%)
Strand=Plus/Plus
Query 1 CACCGAGGGCCTCTCGTTTCATGAGAGAGAGaaaaaaaaTCTTATCTTTGTGACAGCGGT 60
|||||||||||||||||||||||||||| | | |||||||||||||||| ||||| ||||
Sbjct 1 CACCGAGGGCCTCTCGTTTCATGAGAGA-A-ACAAAAAATCTTATCTTTCTGACAACGGT 58
Query 61 GGTGGTGTGTGATGTTGTCAGCCATGGCAAAGACAGAGCAACAACGA--TCTCTCTCTTT 118
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 59 GGTGGTGTGTGATGTTGTCAGCCATGGCAAAGACAGAGCTACAACGATCTCTCTCTCTTT 118
Query 119 TC-CCTTCTTCTGTGTCTGTCTTTAAACAGAGTCTCTTTGAAACGAAGCAGCTTTGTCCT 177
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 119 TCTTCTTCTTCTGTGTCTGTCTTTAAATAGAGTCTCTTTGAAACGAAGCAGCTTTGTCCT 178
Query 178 GTTTTGATATCCATGGCTTTACCTTCGTGCTTAAAGACTGGAGGTTTAATGTCTCCGGCC 237
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 179 GTTCTGATATCCATGGCTTTACCTTCGTGCTTAAAGACTGGAGCTTTAATGTCTCCGGCC 238
Query 238 ACTGGTTTTAATCTTTCCGGCAGTCTGATGAAGTTGGACAGTGGTTTTGCCGTTCCGATA 297
||||| |||||| ||||||||||||| ||||||| ||||| || || |||||||||| |
Sbjct 239 ACTGGATTTAATTTTTCCGGCAGTCTTATGAAGTCAGACAGCGGCTTCGCCGTTCCGACA 298
Query 298 AAGTTACAGAGTAATCGAAAAGGTGATCGAGAAAGATTGAGAATCCAAGCTGTCTTCAGT 357
||||||||||||| |||||||||||||||||| ||||||||| |||||||| | ||||||
Sbjct 299 AAGTTACAGAGTACTCGAAAAGGTGATCGAGAGAGATTGAGAGTCCAAGCTATTTTCAGT 358
Query 358 TTCCCTCCTGCGTTTCTGACAAGAAACGGTCGAGCTGAGAAGCAGAAACAGCTCAAACAA 417
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 359 TTCCCTCCTGCGTTTCTGACAAGAAACGGTCGAGCTGAGAAACAGAAACAGCTCAAACAA 418
Query 418 GAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCTACGGCTTCACCTGATGACCAG 477
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 419 GAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCTACGGCCTCGCCTGATGACCAG 478
Query 478 CTACGTATTGATCAGTTAGCGCGTAAAGTGGAAGCTGTTAATCCCACCAAGGAGCCTCTG 537
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 479 CTTCGGATTGATCAGTTAGCGCGTAAAGTGGAAGCAGTTAATCCCACCAAGGAGCCTTTG 538
Query 538 AAATCTGATTTGATCAATGGAAAATGGGAACTCATTTATACAACTTCTGCTTCGATTTTG 597
|| ||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 539 AAGTCTGATTTGGTCAATGGAAAATGGGAGCTCATTTATACAACCTCTGCTTCGATTTTG 598
Query 598 CAGGCAAAGAAACCGAGGTTCTTAAGATCAATAACCAACTACCAATCTATCAATGTGGAT 657
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CAGGCAAAGAAACCAAGGTTCTTAAGATCAATAACCAACTACCAATCTATCAATGTGGAT 658
Query 658 ACACTGAAGGTGCAAAACATGGAGACTTGGCCTTTCTATAACTCGGTAACTGGAGACCTG 717
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 659 ACACTTAAGGTGCAAAACATGGAGACTTGGCCTTTCTATAACTCGGTAACTGGAGACATA 718
Query 718 AAACCCCTCAATTCGAAGAAAGTTGCTGTGAAACTCCAAGTGTTTAAAATTCTCGGCTTT 777
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 719 AAACCCCTCAATTCGAAGAAGGTTGCTGTGAAACTCCAAGTGTTTAAAATTCTCGGATTT 778
Query 778 ATTCCTGTAAAAGCACCTGATAGCGCACGCGGTGAACTAGAGATTACTTATGTGGACGAA 837
|||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 779 ATTCCTATAAAAGCACCTGATAGCGCCCGCGGTGAACTTGAGATTACCTATGTGGACGAG 838
Query 838 GAACTACGGTTATCAAGGGGTGACAAAGGGAACTTGTTTATATTGAAGATGTTCGATCCC 897
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 839 GAACTACGGTTATCAAGAGGTGACAAAGGGAACTTGTTTATATTGAAGATGTTTGATCCC 898
Query 898 ACTTATCGAATCCCTCTCTGATCT-CC--------G--A--G--CCATCCATCATACAT- 941
||||||||||||||||| |||||| || | | | |||||||||||||||
Sbjct 899 ACTTATCGAATCCCTCTTTGATCTACCAAACAAATGGTACCGAGCCATCCATCATACATA 958
Query 942 -T-G-T-C---T--CT----CT-TC---ATCATGTATGTAATCTAACATAA-AAATAATT 983
| | | | | || || || ||||||||||||||||||||||| ||| ||||
Sbjct 959 CTTGCTACAACTTGCTATGTCTCTCTTCATCATGTATGTAATCTAACATAAGAAA-AATT 1017
Query 984 AATAAGAGGGAATAAAAAGAGACGAGCTTTTGTCATTTTTTCAACTTGTTCAAATCAAAG 1043
|||||||||||| |||| ||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1018 AATAAGAGGGAA-AAAATGAGACGAGCTTCTGTCATTGTTTCAACTTGTTCAAATCAAAG 1076
Query 1044 ATTCTGAATCTTGATTTGGTTGAACAGTTGGCTCCAATCCTAAACTATATGATACTGAAT 1103
||||||||||||||||||||||| ||||| | |||||||||||||||| |||| || ||
Sbjct 1077 ATTCTGAATCTTGATTTGGTTGAGCAGTTAGTTCCAATCCTAAACTATGTGATGCTCAAG 1136
Query 1104 CAGTACAA 1111
||||||||
Sbjct 1137 CAGTACAA 1144
> AT3G26080.1 | Symbols: | plastid-lipid associated protein PAP
/ fibrillin family protein | chr3:9528774-9530496 FORWARD
LENGTH=1021
Length=1021
Score = 813 bits (440), Expect = 0.0
Identities = 663/764 (87%), Gaps = 42/764 (5%)
Strand=Plus/Plus
Query 167 AGCTTTGTCCTGTTTTGATATCCATGGCTTTACCTTCGTGCTTAAAGACTGGAGGTTTAA 226
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 202 AGCTTTGTCCTGTTTTGATATCCATGGCTTTACCTTGGTGCTTAAAGACTGGAGTTTTAA 261
Query 227 TGTCTCCGGCCACTGGTTTTAATCTTTCCGGCAGTCTGATGAAGTTGGACAGTGGTTTTG 286
|||||||||| | || ||||||| | | || || ||||||||| || |
Sbjct 262 CGTCTCCGGCCGCCGGATTTAATC-AT-C--CA-TC----------GGACAGTGGCTTCG 306
Query 287 CCGTTCCGATAAAGTTACAGAGTAATCGAAAAGGTGATCGAGAAAGATTGAGAATCCAAG 346
||||||||| ||||||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 307 CCGTTCCGACGAAGTTACTGAGTATTCGAAAAGGTGATCGGGAAAGATTGAGAATCCAAG 366
Query 347 CTGTCTTCAGTTTCCCTCCTGCGTTTCTGACAAGAAACGGTCGAGCTGAGAAGCAGAAAC 406
|||| ||||| || | | | || ||||||||||| |||| ||||||| |||||
Sbjct 367 CTGTTTTCAGCTT---T-C--C---TC---CAAGAAACGGTGGAGCCGAGAAGCGGAAAC 414
Query 407 AGCTCAAACAAGAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCTACGGCTTCAC 466
|||||||||| |||||| | ||||||||||||||||||||||||||||| || || || |
Sbjct 415 AGCTCAAACATGAACTTGTCGAAGCCATTGAGCCTCTTGAACGTGGTGCCACTGCCTCGC 474
Query 467 CTGATGACCAGCTACGT-ATTGATCAGTTAGCGCGTAAAGTGGAAGCTGTTAATCCC-AC 524
||||||| ||||| | | |||||||||||||| ||||| |||||||| | ||| ||| ||
Sbjct 475 CTGATGATCAGCTTC-TGATTGATCAGTTAGCACGTAAGGTGGAAGCAG-TAAACCCAAC 532
Query 525 CAAGGAGCCTCTGAAATCTGATTTGATCAATGGAAAATGGGAACTCATTTATACAACTTC 584
||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||
Sbjct 533 CAAGGAGCCTCTGAAGTCTGATTTGATCAATGGGAAATGGGAGCTCATTTACACAACATC 592
Query 585 TGCTTCGATTTTGCAGGCAAAGAAACCGAGGTTCTTAAGATCAATAACCAACTACCAATC 644
|||| |||||||||| ||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 593 TGCTGCGATTTTGCAAGCAAAGAAACCAAGGTTCTTAAGATCGTTAACTAACTACCAATG 652
Query 645 TATCAATGTGGATACACTGAAGGTGCAAA-ACATGGAGACTTGGCCTTTCTATAACTCGG 703
||||||| |||||||||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct 653 TATCAATATGGATACACTAAAGGTGCAAAGA-ATGGAGACTTGGCCTTTCTATAACTCGG 711
Query 704 TAACTGGAGACCTGAAACCCCTCAATTCGAAGAAAGTTGCTGTGAAACTCCAAGTGTTTA 763
||||||||||| ||| ||||||||| ||||||| |||||||||||||| ||||||||||
Sbjct 712 TAACTGGAGACTTGACACCCCTCAACTCGAAGACGGTTGCTGTGAAACTTCAAGTGTTTA 771
Query 764 AAATTCTCGGCTTTATTCCTGTAAAAGCACCTGATAG--C-GCACGCGGTGAACTAGAGA 820
||||||||||||||||||| ||||||||||||||| | | |||||||||||||||||||
Sbjct 772 AAATTCTCGGCTTTATTCCGGTAAAAGCACCTGATGGTACTGCACGCGGTGAACTAGAGA 831
Query 821 TTACTTATGTGGACGAAGAACTACGGTTATCAAGGGGTGACAAAGGGAACTTGTT-T--A 877
|||| ||||||||||| ||||||||| |||||||||| |||||| |||||||| | |
Sbjct 832 TTACCTATGTGGACGAGGAACTACGGATATCAAGGGG---CAAAGGCAACTTGTTGTTTA 888
Query 878 TATTGAAGATGTTCGATCCCACTTATCGAATCCCTCTCTGATCT 921
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 889 TATTGAAGATGTTTGATCCCACTTATCGAATCCCTCTCTGATCT 932
> AT3G26060.2 | Symbols: ATPRX Q | Thioredoxin superfamily protein
| chr3:9524725-9526407 FORWARD LENGTH=1020
Length=1020
Score = 76.8 bits (41), Expect = 4e-13
Identities = 69/81 (85%), Gaps = 8/81 (10%)
Strand=Plus/Plus
Query 1112 TCTTTCATGCATGTCTCATGTCTGTCTCCATGA--CCTT--CC--C--ATACTGTTTCTT 1163
||||||||||||||||||||||||||||||||| || | || | ||| |||||||
Sbjct 763 TCTTTCATGCATGTCTCATGTCTGTCTCCATGAGACCATGACCTTCTTATATTGTTTCTG 822
Query 1164 TTGATTATGAATTTTCAATAA 1184
|||| ||||||||||||||||
Sbjct 823 TTGAGTATGAATTTTCAATAA 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58433434380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5