BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484370
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26080.1 | Symbols: | plastid-lipid associated protein PAP ... 1229 0.0
AT3G26070.1 | Symbols: | Plastid-lipid associated protein PAP ... 883 0.0
> AT3G26080.1 | Symbols: | plastid-lipid associated protein PAP
/ fibrillin family protein | chr3:9528774-9530496 FORWARD
LENGTH=1021
Length=1021
Score = 1229 bits (665), Expect = 0.0
Identities = 839/918 (91%), Gaps = 32/918 (3%)
Strand=Plus/Plus
Query 24 aaaaaaaTCTTATCTTTGTGACTTTCGGTGGTGTGTGTGATGTTGTTGTCGGCCATGGCG 83
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 40 AAAAAAACCTTATCTTTGTGACTTTCGGTGGTGTGTGTGATGTTGTTGTCGGTCATGGCG 99
Query 84 AAGACAGAGCAACGATCTCTCTCTTTTTCCT-TCTTATGTGTTTATCTTCGGACTTCGAA 142
|||||||||| |||||||||||||||||||| |||||||||| || | |||||||
Sbjct 100 AAGACAGAGCTACGATCTCTCTCTTTTTCCTCTCTTATGTGTCTA---T----CTTCGAA 152
Query 143 CAGAGTCTCTCTGAAACGAAGCAGCGACTC-TTGAAACTCCATTGGAAAAACTTTTTGTC 201
||||||||||| ||||||| |||| |||| || |||||||||||||||| | ||||||
Sbjct 153 CAGAGTCTCTCAGAAACGACCCAGCCACTCTTTAAAACTCCATTGGAAAAGC--TTTGTC 210
Query 202 CTGTTTTGATATTCATGGCTTTACCTTGGTACTTAAAGACTGGAGTTTTAATGTCTCCTC 261
|||||||||||| ||||||||||||||||| |||||||||||||||||||| | | |||
Sbjct 211 CTGTTTTGATATCCATGGCTTTACCTTGGTGCTTAAAGACTGGAGTTTTAACG--T-CTC 267
Query 262 CGGCCGCCGGATTTAGTCTTCCAGGCAGTCTTATGAAGTTGGACAGTGGCTTTGCCGTTC 321
||||||||||||||| || | | || || |||||||||||| |||||||
Sbjct 268 CGGCCGCCGGATTTAATCAT-C---CA-TC----------GGACAGTGGCTTCGCCGTTC 312
Query 322 CGAAAAAGTTACAGAATATTCGTAAAGGTGATCGGGAAAGATTGAGAATCCAAGCTGTTT 381
||| ||||||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 313 CGACGAAGTTACTGAGTATTCGAAAAGGTGATCGGGAAAGATTGAGAATCCAAGCTGTTT 372
Query 382 TCAGCTTTCCTCCAAGAAACGGTCAAACCGAGAAGCGGAAACAGCTCAAACAGGAACTTC 441
||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||
Sbjct 373 TCAGCTTTCCTCCAAGAAACGGTGGAGCCGAGAAGCGGAAACAGCTCAAACATGAACTTG 432
Query 442 TTGAAGCCATTGAGCCTCTTGAACGTGGTGCCACTGCCACGCCTGATGATCAGCTTCGGA 501
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 433 TCGAAGCCATTGAGCCTCTTGAACGTGGTGCCACTGCCTCGCCTGATGATCAGCTTCTGA 492
Query 502 TTGATCAGTTAGCACGTAAGGTGGAAGCAGTAAACCCAACCAATGAGCCTCTGAAATCTG 561
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 493 TTGATCAGTTAGCACGTAAGGTGGAAGCAGTAAACCCAACCAAGGAGCCTCTGAAGTCTG 552
Query 562 ATTTAATCAATGGGAAATGGGAGCTCATTTATACAACATCTGCTGCGATTTTGCAAGCAA 621
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 553 ATTTGATCAATGGGAAATGGGAGCTCATTTACACAACATCTGCTGCGATTTTGCAAGCAA 612
Query 622 AGAAACCAAGGTTCTTAAGATCAATAACAAACTACCAATGTATCAATATGGATACACTAA 681
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 613 AGAAACCAAGGTTCTTAAGATCGTTAACTAACTACCAATGTATCAATATGGATACACTAA 672
Query 682 AGGTGCAAAGAATGGAGACTTGGCCTTTCTATAACTCGGTAACTGGAGATTTGACGCCCC 741
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 673 AGGTGCAAAGAATGGAGACTTGGCCTTTCTATAACTCGGTAACTGGAGACTTGACACCCC 732
Query 742 TCAATTCCAAGAAGGTTGCTGTGAAACTCCAAGTGTTTAAAATTCTCGGCTTTATTCCTG 801
|||| || |||| ||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 733 TCAACTCGAAGACGGTTGCTGTGAAACTTCAAGTGTTTAAAATTCTCGGCTTTATTCCGG 792
Query 802 TAAAAGCACCTGATAG--C-GCCCGCGGTGAACTAGAGATTACTTATGTGGACGAGGAAC 858
|||||||||||||| | | || |||||||||||||||||||| ||||||||||||||||
Sbjct 793 TAAAAGCACCTGATGGTACTGCACGCGGTGAACTAGAGATTACCTATGTGGACGAGGAAC 852
Query 859 TACGGATATCAAGGGGCAAAGGCAACTTGTTGTTTATATTGAAGATGTTCGATCCCACTT 918
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 853 TACGGATATCAAGGGGCAAAGGCAACTTGTTGTTTATATTGAAGATGTTTGATCCCACTT 912
Query 919 ATCGAATCCCTCTCTGAT 936
||||||||||||||||||
Sbjct 913 ATCGAATCCCTCTCTGAT 930
> AT3G26070.1 | Symbols: | Plastid-lipid associated protein PAP
/ fibrillin family protein | chr3:9526714-9528583 FORWARD
LENGTH=1303
Length=1303
Score = 883 bits (478), Expect = 0.0
Identities = 670/759 (88%), Gaps = 27/759 (4%)
Strand=Plus/Plus
Query 196 TTTGTCCTGTTTTGATATTCATGGCTTTACCTTGGTACTTAAAGACTGGAGTTTTAATGT 255
||||||||||| |||||| |||||||||||||| || |||||||||||||| |||||||
Sbjct 171 TTTGTCCTGTTCTGATATCCATGGCTTTACCTTCGTGCTTAAAGACTGGAGCTTTAATG- 229
Query 256 CTCCTCCGGCCGCCGGATTT-AGTCTTCCAGGCAGTCTTATGAAGTTGGACAGTGGCTTT 314
| |||||||| | |||||| | | |||| |||||||||||||||| ||||| |||||
Sbjct 230 -T-CTCCGGCCACTGGATTTAATTTTTCC-GGCAGTCTTATGAAGTCAGACAGCGGCTTC 286
Query 315 GCCGTTCCGAAAAAGTTACAGAATATTCGTAAAGGTGATCGGGAAAGATTGAGAATCCAA 374
|||||||||| ||||||||||| || ||| ||||||||||| || ||||||||| |||||
Sbjct 287 GCCGTTCCGACAAAGTTACAGAGTACTCGAAAAGGTGATCGAGAGAGATTGAGAGTCCAA 346
Query 375 GCTGTTTTCAGCTT---T-C--C---TC---CAAGAAACGGTCAAACCGAGAAGCGGAAA 422
||| ||||||| || | | | || |||||||||||| | | ||||| | ||||
Sbjct 347 GCTATTTTCAGTTTCCCTCCTGCGTTTCTGACAAGAAACGGTCGAGCTGAGAAACAGAAA 406
Query 423 CAGCTCAAACAGGAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCCACTGCCACG 482
||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 407 CAGCTCAAACAAGAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCTACGGCCTCG 466
Query 483 CCTGATGATCAGCTTCGGATTGATCAGTTAGCACGTAAGGTGGAAGCAG-TAAACCCAAC 541
|||||||| ||||||||||||||||||||||| ||||| |||||||||| ||| ||| ||
Sbjct 467 CCTGATGACCAGCTTCGGATTGATCAGTTAGCGCGTAAAGTGGAAGCAGTTAATCCC-AC 525
Query 542 CAATGAGCCTCTGAAATCTGATTTAATCAATGGGAAATGGGAGCTCATTTATACAACATC 601
||| |||||| |||| |||||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 526 CAAGGAGCCTTTGAAGTCTGATTTGGTCAATGGAAAATGGGAGCTCATTTATACAACCTC 585
Query 602 TGCTGCGATTTTGCAAGCAAAGAAACCAAGGTTCTTAAGATCAATAACAAACTACCAATG 661
|||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 586 TGCTTCGATTTTGCAGGCAAAGAAACCAAGGTTCTTAAGATCAATAACCAACTACCAATC 645
Query 662 TATCAATATGGATACACTAAAGGTGCAAAGA-ATGGAGACTTGGCCTTTCTATAACTCGG 720
||||||| |||||||||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct 646 TATCAATGTGGATACACTTAAGGTGCAAA-ACATGGAGACTTGGCCTTTCTATAACTCGG 704
Query 721 TAACTGGAGATTTGACGCCCCTCAATTCCAAGAAGGTTGCTGTGAAACTCCAAGTGTTTA 780
|||||||||| | | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 705 TAACTGGAGACATAAAACCCCTCAATTCGAAGAAGGTTGCTGTGAAACTCCAAGTGTTTA 764
Query 781 AAATTCTCGGCTTTATTCCTGTAAAAGCACCTGATAGCGCCCGCGGTGAACTAGAGATTA 840
|||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 765 AAATTCTCGGATTTATTCCTATAAAAGCACCTGATAGCGCCCGCGGTGAACTTGAGATTA 824
Query 841 CTTATGTGGACGAGGAACTACGGATATCAAG-GG-G-CAAAGGCAACTTGTTGTTTATAT 897
| ||||||||||||||||||||| ||||||| || | |||||| |||||||| | ||||
Sbjct 825 CCTATGTGGACGAGGAACTACGGTTATCAAGAGGTGACAAAGGGAACTTGTT-T--ATAT 881
Query 898 TGAAGATGTTCGATCCCACTTATCGAATCCCTCTCTGAT 936
|||||||||| ||||||||||||||||||||||| ||||
Sbjct 882 TGAAGATGTTTGATCCCACTTATCGAATCCCTCTTTGAT 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5