BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484372
Length=1661
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26090.1 | Symbols: RGS1, ATRGS1 | G-protein coupled recepto... 2547 0.0
> AT3G26090.1 | Symbols: RGS1, ATRGS1 | G-protein coupled receptors;GTPase
activators | chr3:9532748-9535629 FORWARD LENGTH=1734
Length=1734
Score = 2547 bits (1379), Expect = 0.0
Identities = 1524/1594 (96%), Gaps = 9/1594 (1%)
Strand=Plus/Plus
Query 1 TTTATTGAAATTTGCACACTTTACCTTGACATTAAAGCAACAAGCTTTGGAACAAACAAA 60
||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || | |
Sbjct 19 TTTATAGAAATTTGCACACTTTACCTTGACATTAAAGCAACAAGCTTTGAAACCAA-ATA 77
Query 61 AAATCTCAAAAACCCAGAAATCGAGTGGGAGAAGAGAGAGAGCTGATATACTACAATAAA 120
|||||||||||||||||||| ||||| |||| | ||||||||||||||| |||||||| |
Sbjct 78 AAATCTCAAAAACCCAGAAAGCGAGT-GGAG-A-AGAGAGAGCTGATATGCTACAATAGA 134
Query 121 AATGACGAGTGGATGTGCTATACATGGTGGTTGTCCCAGCGATTACGTCGCCGTCGCAAT 180
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 135 AATGGCGAGTGGATGTGCTCTACATGGTGGTTGTCCCAGCGATTACGTCGCCGTCGCAAT 194
Query 181 TTCAGTAATCTGCTTCTTCGTGCTTTTATCGCGCTCGGTCTTACCGTGTTTGATTCACAA 240
|||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| ||
Sbjct 195 TTCAGTCATCTGCTTCTTCGTGCTGTTATCGCGCTCAGTGTTACCGTGTTTGATTCATAA 254
Query 241 GGCTCCTCGTACTAACAGTAGCAGTTTCTGGATCCCTGTTATTCAAGTTATCTCCAGCTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GGCTCCTCGTACTAACAGTAGCAGTTTCTGGATCCCTGTTATTCAAGTTATCTCCAGCTT 314
Query 301 CAACCTTCTGTTCTCAATTATGATGTCAGTTAATTTACTTCGATTCAGGACGAAACATTG 360
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 315 CAACCTTCTCTTCTCAATTATGATGTCAGTTAATTTGCTTCGATTCAGGACGAAACATTG 374
Query 361 GTGGCGATATTGCTATCTTTGGGCAGTGTGGATTGAAGGACCACTTGGATTTGGTTTGCT 420
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 375 GTGGCGATATTGCTATCTTTGGGCAGTGTGGATTGAAGGACCACTTGGGTTTGGTTTGTT 434
Query 421 GATGGGCTGCCGTATAACTCAGGCATTTCAACTATACTTCATATTTGTCAAGAAACGTCT 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 GATGAGCTGCCGTATAACTCAGGCATTTCAACTATACTTCATATTTGTCAAGAAACGTCT 494
Query 481 ACCACCCGTAAAATCATACATTTTCCTCCCCCTTGTTTTGTTGCCATGGATCTTCGGAGC 540
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 ACCTCCGGTAAAATCATACATTTTCCTCCCCCTTGTTTTGTTGCCATGGATCTTCGGAGC 554
Query 541 TGCAATTATCCACGCAACAAAGCCTCTCAATGATAAATGCCACATGCGTCTTCAATGGAC 600
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 555 TGCAATTATCCACGCAACAAAGCCTCTCAACGATAAATGCCACATGGGTCTTCAATGGAC 614
Query 601 TTTCCCAGTTGCAGGCCTTCATGCTCTCTATGTCCTTGCTTTAATTGCATTCACAAGAGC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 TTTCCCAGTTGCAGGCCTTCATGCTCTCTATGTCCTTGCTTTAATTGCATTCACAAGAGC 674
Query 661 AGTCCGACATGTAGAGTTTCGTTTTGATGAGCTTAGAGATCTCTGGAAAGGAATTCTTGT 720
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 675 AGTTCGACATGTAGAGTTTCGTTTTGACGAGCTTAGAGATCTCTGGAAAGGAATTCTCGT 734
Query 721 CTCAGCCACTTCAATCATTATATGGGTAACAGCGTTTGTGTTGAATGAGATTCATGAAGA 780
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CTCAGCCACTTCAATCGTTATATGGGTAACAGCGTTTGTGTTGAATGAGATTCATGAAGA 794
Query 781 AATCTCTTGGCTTCAGGTTGCTTCAAGATTTGTGCTTCTT-GTCACGGGTGGGATTCTCG 839
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 795 AATCTCTTGGCTTCAGGTTGCTTCAAGATTTGTGCTT-TTAGTCACGGGTGGGATTCTCG 853
Query 840 TCGTTGTCTTCTTTTCCATCTCGAGTAATCAACCTCTTCTTTCACAAATCAGCTTGAAGA 899
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 854 TCGTTGTCTTCTTTTCCATCTCGAGTAACCAACCTCTTCTTTCACAAATCAGCTTGAAGA 913
Query 900 AAAGAGAACACTTTGAGTTTCAAAGAATGGGTCAAGCTCTAGGCATTCCCGATAGCGGCT 959
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 914 AAAGACAAAACTTTGAGTTTCAAAGAATGGGTCAAGCTCTAGGCATTCCCGATAGCGGAT 973
Query 960 TATTATTCCGAAAGGAGGAATATCGACCTGTTGATCCAAACGAGCCACTCGATAAGCTTC 1019
||||||| || |||||||| | |||||||||||| |||||||||||||||||||||||||
Sbjct 974 TATTATTTCGGAAGGAGGAGTTTCGACCTGTTGACCCAAACGAGCCACTCGATAAGCTTC 1033
Query 1020 TTCTCAATAAAAGATTTCGCCAATCGTTTATGGAATTTGCTGATAGCTGCTACGCTGGAG 1079
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1034 TTCTCAATAAAAGATTTCGCCATTCGTTTATGGAATTTGCTGATAGCTGCTACGCTGGAG 1093
Query 1080 AAACATTGCAtttttttGAAGAAGTGTATGAACATGGAAAAATCCCGGTAGATGATTCGA 1139
|||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||
Sbjct 1094 AAACATTGCATTTTTTTGAAGAGGTGTATGAACATGGTAAAATCCCGGAAGATGATTCGA 1153
Query 1140 TAAGAAGAATCTACATGGCTCGACATATCATGGAGAAGTTCATTGTCACAGGAGCGGAAA 1199
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1154 TAAGAAGAATCTACATGGCTCGACATATCATGGAGAAGTTCATCGTCGCAGGAGCGGAAA 1213
Query 1200 TGGAAGTAAATTTATCTCATAAAACCCGACAAGAGATCTTAACCACTCAAGATCTAACTC 1259
||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 TGGAATTGAACTTATCTCATAAAACCCGACAAGAGATCTTAACCACTCAAGATCTAACTC 1273
Query 1260 ACTCTGATCTATTCAAGAACGCATTAAACGAAGTGATGCAATTGATCAAGATGAACTTGG 1319
|| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1274 ACACTGATCTCTTCAAGAACGCATTAAACGAAGTCATGCAATTGATCAAGATGAACTTGG 1333
Query 1320 TGAGAGATTACTGGACATCCATATACTTCATCAAGTTCAAAGAAGAAGAAAGCTGCGGCG 1379
| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1334 TAAGAGATTACTGGTCATCCATCTACTTCATCAAGTTCAAAGAAGAAGAAAGCTGCCACG 1393
Query 1380 AGGCAATGCAAAAGGAAGGATGGAGTTTTTCATCTCCAAGACTGAGTTCAGTTCAAGGCT 1439
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1394 AGGCAATGCATAAGGAAGGATACAGTTTTTCATCTCCAAGACTGAGTTCAGTTCAAGGCT 1453
Query 1440 CTGATGATCCTTTCTATCAAGAACATATGTCAAAGAGTTCCAGATGCAGTAGTCCCGGTT 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 CTGATGATCCTTTCTATCAAGAACATATGTCAAAGAGTTCCAGATGCAGTAGTCCCGGTT 1513
Query 1500 AAGGAGTCTAAACC-GGTACTAGACCAGAACGAAAAACCAATGTTCATAGCAATCCGATC 1558
|||||||||||| | |||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 1514 AAGGAGTCTAAAACTGGTACTAGACCAGAACCCAAA-CCAATGTTCATAGCAATCCAATC 1572
Query 1559 CATATAATCTTC-TTCACATTTCTTGTACATGTC 1591
||| |||||||| |||||||||||||||||||||
Sbjct 1573 CATGTAATCTTCCTTCACATTTCTTGTACATGTC 1606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82077891075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5