BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484373
Length=2234
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26100.2 | Symbols: | Regulator of chromosome condensation ... 2689 0.0
> AT3G26100.2 | Symbols: | Regulator of chromosome condensation
(RCC1) family protein | chr3:9536923-9540453 FORWARD LENGTH=2451
Length=2451
Score = 2689 bits (1456), Expect = 0.0
Identities = 1700/1816 (94%), Gaps = 24/1816 (1%)
Strand=Plus/Plus
Query 200 CAAAGAAACTCACTTTAGCTTTGTCTTTAAATTCTGATGTTCGAATTATTGTTGttgatg 259
|||||||||||||| |||| |||||| || ||||||||||||||||| |||||| | ||
Sbjct 351 CAAAGAAACTCACTATAGC-TTGTCTGTAGATTCTGATGTTCGAATTCTTGTTG-T--TG 406
Query 260 atgaatctgatgatgaattgatgatgatgattgtttgatgcagatgGGTTTT-AAGAATT 318
||| | |||| |||||||||||||||||| |||||||||||||||||||| || || |
Sbjct 407 ATG-A--TGAT--TGAATTGATGATGATGATGGTTTGATGCAGATGGGTTTTCAA-AAAT 460
Query 319 TTCAACCTTTTTCTTaaaaaatcaaaaaGCTTAAAACTTGTTCAGA-AATACTAGAGACA 377
||| | |||||||||| ||||||||||||||| |||||||| | | ||||||||||||
Sbjct 461 CTCATCTTTTTTCTTAACAAATCAAAAAGCTTAGAACTTGTTGA-ACAATACTAGAGACT 519
Query 378 ACAGAATTTGCAGGTAATCTGTTTCAGGCAAATGGATGCTACAACTAGTGGAACTCCGGG 437
| ||||||||||| |||||||||||| ||||||||||| || |||||||||||| |
Sbjct 520 AGAGAATTTGCAGATAATCTGTTTCA--AAAATGGATGCT---ACGAGTGGAACTCCGAG 574
Query 438 ATTACAGTATCTTAACTTACCGGAGCAACCGGTTTCGACTGCTTCTCCTCCTGTGTCACC 497
||||||||| ||||||| ||||| ||| | ||||||||| |||||||||||||||||||
Sbjct 575 TTTACAGTATATTAACTTGCCGGAACAATCTGTTTCGACTACTTCTCCTCCTGTGTCACC 634
Query 498 ATTTCAGAGGCCAAAACGACATTGCTTTGGTGACTCAACTCCTGGAGAGTTTCCTTTAGC 557
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 635 ATTTCAGAGGCCAAAACGACATTGCTTTGGTGACACAACTCCAGGAGAGTTTCCTTTAGC 694
Query 558 AGCTAATCCGTCCATTGTCCTTCATGTTCTCACTGAATGTAGATTGGATCCTCGTGACCT 617
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 695 AGCTAACCCTTCCATTGTCCTACATGTTCTCACTGAATGTAGATTGGATCCTCGTGACCT 754
Query 618 CGCTAATCTCGAGGCAACATGCTCGTTCTTTAGCCAGCCAGCAAACTTTGCCCCGGACAT 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 CGCTAATCTCGAGGCAACATGCTCGTTCTTTAGCCAGCCAGCAAACTTTGCCCCGGACAT 814
Query 678 TAATCTATCACTGTCGGAGCTTGCTGCTCTCGACATGTGTAATAAAAGGGTGATTTTCAA 737
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 815 TAACCTATCACTATCGGAGCTCGCTGCTCTCGACATGTGTAATAAAAGGGTGATTTTCAA 874
Query 738 GCCCATGAATGAAGAAGAACGTCAAGAGATGAAACATAGATGCGGTGGATCGTGGAAATT 797
||| ||||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||
Sbjct 875 GCCGATGAATGAAGAAGAACGTCAAGAGATGAAACGTAGGTGCGGAGGATCATGGAAATT 934
Query 798 GGTCCTACGGTTTTTGCTGGCTGGTGAAGCGTGTTGTCGAAGAGAGAAATCTCAAGCAGT 857
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 935 AGTCCTTCGGTTTTTGCTGGCTGGTGAAGCGTGTTGTCGAAGAGAGAAATCTCAAGCTGT 994
Query 858 TGCTGGTCCTGGTCATAGTATCGCAGTCACATCAAAAGGCGAAGTTTATACTTTCGGATA 917
||||||||||||||||||| | ||||||||||| ||||| ||||||||||||||||||||
Sbjct 995 TGCTGGTCCTGGTCATAGTGTAGCAGTCACATCGAAAGGAGAAGTTTATACTTTCGGATA 1054
Query 918 TAATAACTCTGGACAGCTAGGACATGGTCATACCGAGGAAC-AAGCTCGAATTCAACCTG 976
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1055 TAATAACTCTGGACAGCTAGGACATGGTCATACCGAGGA-CGAAGCTCGAATTCAACCTG 1113
Query 977 TTAGATCATTGCAGGGAATTCGAATCATCCAAGCAGCTGCTGGTGCTGCCCGGACAATGC 1036
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1114 TTAGATCATTGCAGGGAGTTCGAATCATCCAAGCAGCTGCTGGTGCTGCTCGGACAATGC 1173
Query 1037 TAATAAGCGATGACGGAAAAGTTTATGCGTGCGGAAAAGAATCATTTGGGGAAGCTGAAT 1096
||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 1174 TAATAAGCGATGACGGAAAAGTTTATGCGTGTGGAAAAGAATCCTTCGGGGAAGCTGAAT 1233
Query 1097 ACGGAGGGCAAGGGACTCAACCAGTTACAACTCCTCAGCTTGTAACATCTTTAAAGAACA 1156
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1234 ACGGAGGGCAAGGGACTAAACCAGTTACAACTCCTCAGCTTGTAACATCTTTAAAAAACA 1293
Query 1157 TATTTGTTGTGCAAGCGGCTATCGGAAATTACTTTACCGCTGTTCTCTCCCGAGAAGGAA 1216
||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1294 TATTTGTAGTGCAAGCAGCTATTGGGAATTACTTTACCGCTGTTCTCTCCCGAGAAGGAA 1353
Query 1217 AGGTTTATACATTTTCGTGGGGCAACGACGGTAGACTAGGACACCAAACCGAGGCCGCGG 1276
||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1354 AGGTTTATACATTCTCGTGGGGCAATGACGGTAGACTAGGACACCAAACTGAGGCTGCGG 1413
Query 1277 ATGTCGAGCCCCGTCCTTTGTTAGGCCCTCTCGAGAATGTACCCGTTGTGCAGATTGCTG 1336
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1414 ATGTCGAGCCTCGTCCTTTGTTAGGCCCACTCGAGAATGTACCCGTTGTGCAGATTGCTG 1473
Query 1337 CTGGTTATTGCTACCTTCTTGCCTTAGCTTGTCAACCAAATGGCATGTCTGTTTACTCGG 1396
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1474 CTGGTTATTGCTACCTTCTTGCCTTAGCCTGTCAACCAAATGGCATGTCTGTTTACTCAG 1533
Query 1397 TTGGTTGCGGTTTGGGAGGCAAACTTGGTCATGGCTCAAGAACGGATGAGAAGTATCCTC 1456
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1534 TTGGTTGCGGTTTGGGAGGCAAACTTGGTCATGGGTCAAGAACAGATGAGAAGTATCCTC 1593
Query 1457 GGGTTATCGAGCAGTTTAAGATATTGGATCTTCAACCTAGGGTAGTTGCAGCGGGTGCTT 1516
|||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1594 GGGTCATCGAGCAGTTTCAGATATTGAATCTTCAACCTAGGGTAGTTGCAGCGGGTGCTT 1653
Query 1517 GGCATGCTGCGGTGGTAGGTCAGGACGGAAGAGTGTGCACTTGGGGTTGGGGAAGATACG 1576
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1654 GGCATGCCGCGGTGGTAGGTCAGGATGGAAGAGTGTGCACTTGGGGTTGGGGAAGATATG 1713
Query 1577 GATGTTTAGGGCACGGTAACGAGGAGTGTGAATCAGTCCCTAAGGTTGTAGAAGGGT-TA 1635
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 1714 GATGTTTAGGTCACGGTAACGAGGAGTGTGAATCAGTCCCTAAGGTTGTTGAAGG-TCTA 1772
Query 1636 AGCCATGTCAAGGCGGTTCATGTCGCAACAGGCGATTACACTACTTTTGTGGTCTCAGAC 1695
||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1773 AGCCATGTCAAAGCAGTTCATGTCGCAACAGGAGACTACACTACTTTTGTGGTCTCAGAC 1832
Query 1696 GATGGTGATGTTTACTCGTTTGGTTGCGGCGAATCCGCTAGTCTCGGTCACCATCCATCC 1755
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1833 GATGGTGATGTTTACTCGTTTGGCTGCGGCGAATCCGCTAGTCTCGGTCACCATCCATCC 1892
Query 1756 TTTGATGAACAGGGTAATCGACATGCAAACGTGCTAAGTCCAGCGGTAGTAACATCGCTG 1815
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1893 TTTGATGAACAGGGTAATCGACATGCAAACGTGCTAAGTCCAACGGTAGTAACATCGCTA 1952
Query 1816 AAACAAGCGAACGAGCGGGTGGTTCAGATTAGTCTAACGAACTCTATATATTGGAACGCT 1875
||||||| |||||||||| |||| ||||| |||||||||||||| ||||| |||||||||
Sbjct 1953 AAACAAGTGAACGAGCGGATGGTCCAGATAAGTCTAACGAACTCCATATACTGGAACGCT 2012
Query 1876 CATACGTTTGCGCTCACGGAATCGGGGAAGCTATAT-GCGTTTGGTGCAGGCGATCAGGG 1934
||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 2013 CATACATTTGCGCTCACGGAATCGGGGAAGCTAT-TCGCGTTTGGTGCAGGCGATCAGGG 2071
Query 1935 TCAGCTTGGAGCAGAGCTTGATAGGAACCGAAAAGAAAGGTGTGTACCGGAAAAAGTGGA 1994
|||||||||| ||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 2072 TCAGCTTGGAACAGAGCTTGGTAAGAACCAAAAAGAAAGGTGTGTACCGGAAAAAGTGGA 2131
Query 1995 TATCGATCTCAGCTAG 2010
||||||||||||||||
Sbjct 2132 TATCGATCTCAGCTAG 2147
Score = 300 bits (162), Expect = 4e-80
Identities = 213/235 (91%), Gaps = 13/235 (6%)
Strand=Plus/Plus
Query 2011 AACTGCGTTTGACATCAAGCaaa-aaaaaCGCAAGAAAAATTGCGTTTGCTATTTATGTT 2069
|||| |||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||
Sbjct 2179 AACTACGTTTGACATCAAGGAAACAAAAACGCAAGAAAATTTGCGTTTGCTTTTTATGTT 2238
Query 2070 CATAAGACTTGGAAGCTTGTACATAAA---G--TTA-AGGAACTTGTCTTTAACATTTCA 2123
||||||||||||||||||||||| ||| | | | | ||||||||||||||||||||
Sbjct 2239 CATAAGACTTGGAAGCTTGTACAAAAAGGGGAATAACATAAACTTGTCTTTAACATTTCA 2298
Query 2124 TTGTATA-GG-TTTTAGATTATTCTAATTGTTCATT-GTTCAAGTTTTAGGTTATGTTGT 2180
||||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 2299 TTGTATAGGGTTTTTAGATTATTCTAATTGTTCATTGGTT-AAGTTTTAGGTTATGTTGT 2357
Query 2181 TAATAATTGTCAAATAATTTCATTAAATCAA-TTAATTGTCAGATTCAATTTCTA 2234
|||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 2358 TAATAATTATCAAATAATTTCATTAAATCAAATTA-TTGTCAGATTCAATTTCTA 2411
Score = 150 bits (81), Expect = 5e-35
Identities = 92/97 (95%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 51 TAAGTCCGCATAAAGAGACACCGCAACTTTCTTTCTTCTTCATTCACTTCTCTCAACGCC 110
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 115 TAAGTCCGCATAAAGAGACACCACAACTTTCTTTCTTCTTCATTCACTTCTATCAACGCC 174
Query 111 AAATTTGCAGACTTTCCCAGGACGAAAATT-TCTTAA 146
||||||||||||||||||||||| |||||| | ||||
Sbjct 175 AAATTTGCAGACTTTCCCAGGACCAAAATTATATTAA 211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110842803360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5