BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484375
Length=570
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26110.1 | Symbols: | Anther-specific protein agp1-like | c... 693 0.0
> AT3G26110.1 | Symbols: | Anther-specific protein agp1-like |
chr3:9541483-9542114 FORWARD LENGTH=632
Length=632
Score = 693 bits (375), Expect = 0.0
Identities = 527/596 (88%), Gaps = 27/596 (5%)
Strand=Plus/Plus
Query 1 AAATAAAGGAAAATACCCATAAAACATTTTT----aaaaaaaaGTTTTTTGGGCATTACT 56
||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 10 AAATAAAACAAAATACCCATAAAACATTTTTCAAAAAAAAAAAGTTTTTTGGGGATTACT 69
Query 57 -AATAAAATAAATT-TAAAATAATGGCGCGTCTTCACGTAGCTCTCCTCCTCCTCTTCAT 114
||| || |||||| ||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 70 AAAT-AACTAAATTAAAAAATAATGGCGCGTCTTCACCTAGCTCTCCTCCTCCTCTTCGT 128
Query 115 CGCTATCTCCGCCGTGATTGTATCACCTGCTGATAATGATAAACCACCGTCAACCACCAC 174
|||||||||||||||||| |||||| ||||||| || || ||||||||||||||||||||
Sbjct 129 CGCTATCTCCGCCGTGATCGTATCAGCTGCTGAGAACGAAAAACCACCGTCAACCACCAC 188
Query 175 CGCCTCAGCTCCCACCGCTACAACTCCGACCGATGGCATTGGAGGTGATGTAGTAGAAGG 234
||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||
Sbjct 189 CGCCTCAGCTCCCACCGCTACAACTCCAACCGATGGCATTGGAGGTGATATAGCAGAGGG 248
Query 235 TCCAGCTGATGACAATGCTATTGGAACAACTGACAACGACGATGCAGCTGTTACTCCAGA 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 249 TCCAGCTGATGACAATGCTATTGGAACAACTGACAACGACGATGCAGCTGTTACTCCCGA 308
Query 295 TGATGCTGCCGGAGATGATGAAGTGGCAGTCGCCGGACCTATTGGAAGCGATTCTTCGTA 354
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 309 TGATGCCAATGGAGATGATGAAGTGGCAGTCGCCGGACCTATTGGAAGCGATGCTTCGTA 368
Query 355 CGCTAACTATCCGCCACCTCAACAAGAAGCTTCCGGAAGCGGTGCCACCGTAGCTTTTGG 414
|||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||||||||
Sbjct 369 CGCTAACTATCCTCCACCACAAAAAGAAGCTTCCGGAAGCGATGCCACCGTAGCTTTTGG 428
Query 415 CTTTGTCTCTGTTGTTGGTGCAATGGCTGGATCGCTCTTCTTTTTCTAGAGCTGTGATCG 474
|||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 429 CTTTGTCTCTGTTGTTGGTGCAGTTGCTGGATCGCTCTTCTTTTTCTAGAGTTGTGATCG 488
Query 475 GCGCG--AA-TG-TT--T---GAAATATTT-TCTT-GTAG-AT------GTATAA-A-GT 514
||||| || | || | | |||| | || ||| || || | | | ||
Sbjct 489 GCGCGCGAACTTATTACTATTGTAATAAAAATGTTTGTAATATTTTCTTGTTTTAGATGT 548
Query 515 ATTTTGACTATCCCTTCTTCGATGTAACATCGATTAAATTGGGATGATACATCTTT 570
|||||||| ||||||||||||||||||||| ||||| ||||||||||||||| |||
Sbjct 549 ATTTTGACGATCCCTTCTTCGATGTAACATTGATTATATTGGGATGATACATATTT 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27377610115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5