BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484375 Length=570 Score E Sequences producing significant alignments: (Bits) Value AT3G26110.1 | Symbols: | Anther-specific protein agp1-like | c... 693 0.0 > AT3G26110.1 | Symbols: | Anther-specific protein agp1-like | chr3:9541483-9542114 FORWARD LENGTH=632 Length=632 Score = 693 bits (375), Expect = 0.0 Identities = 527/596 (88%), Gaps = 27/596 (5%) Strand=Plus/Plus Query 1 AAATAAAGGAAAATACCCATAAAACATTTTT----aaaaaaaaGTTTTTTGGGCATTACT 56 ||||||| |||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 10 AAATAAAACAAAATACCCATAAAACATTTTTCAAAAAAAAAAAGTTTTTTGGGGATTACT 69 Query 57 -AATAAAATAAATT-TAAAATAATGGCGCGTCTTCACGTAGCTCTCCTCCTCCTCTTCAT 114 ||| || |||||| ||||||||||||||||||||| |||||||||||||||||||| | Sbjct 70 AAAT-AACTAAATTAAAAAATAATGGCGCGTCTTCACCTAGCTCTCCTCCTCCTCTTCGT 128 Query 115 CGCTATCTCCGCCGTGATTGTATCACCTGCTGATAATGATAAACCACCGTCAACCACCAC 174 |||||||||||||||||| |||||| ||||||| || || |||||||||||||||||||| Sbjct 129 CGCTATCTCCGCCGTGATCGTATCAGCTGCTGAGAACGAAAAACCACCGTCAACCACCAC 188 Query 175 CGCCTCAGCTCCCACCGCTACAACTCCGACCGATGGCATTGGAGGTGATGTAGTAGAAGG 234 ||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| || Sbjct 189 CGCCTCAGCTCCCACCGCTACAACTCCAACCGATGGCATTGGAGGTGATATAGCAGAGGG 248 Query 235 TCCAGCTGATGACAATGCTATTGGAACAACTGACAACGACGATGCAGCTGTTACTCCAGA 294 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 249 TCCAGCTGATGACAATGCTATTGGAACAACTGACAACGACGATGCAGCTGTTACTCCCGA 308 Query 295 TGATGCTGCCGGAGATGATGAAGTGGCAGTCGCCGGACCTATTGGAAGCGATTCTTCGTA 354 |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 309 TGATGCCAATGGAGATGATGAAGTGGCAGTCGCCGGACCTATTGGAAGCGATGCTTCGTA 368 Query 355 CGCTAACTATCCGCCACCTCAACAAGAAGCTTCCGGAAGCGGTGCCACCGTAGCTTTTGG 414 |||||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||||| Sbjct 369 CGCTAACTATCCTCCACCACAAAAAGAAGCTTCCGGAAGCGATGCCACCGTAGCTTTTGG 428 Query 415 CTTTGTCTCTGTTGTTGGTGCAATGGCTGGATCGCTCTTCTTTTTCTAGAGCTGTGATCG 474 |||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| Sbjct 429 CTTTGTCTCTGTTGTTGGTGCAGTTGCTGGATCGCTCTTCTTTTTCTAGAGTTGTGATCG 488 Query 475 GCGCG--AA-TG-TT--T---GAAATATTT-TCTT-GTAG-AT------GTATAA-A-GT 514 ||||| || | || | | |||| | || ||| || || | | | || Sbjct 489 GCGCGCGAACTTATTACTATTGTAATAAAAATGTTTGTAATATTTTCTTGTTTTAGATGT 548 Query 515 ATTTTGACTATCCCTTCTTCGATGTAACATCGATTAAATTGGGATGATACATCTTT 570 |||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||| Sbjct 549 ATTTTGACGATCCCTTCTTCGATGTAACATTGATTATATTGGGATGATACATATTT 604 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27377610115 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5