BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484377
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26115.2 | Symbols: | Pyridoxal-5'-phosphate-dependent enzy... 926 0.0
> AT3G26115.2 | Symbols: | Pyridoxal-5'-phosphate-dependent enzyme
family protein | chr3:9542278-9544377 FORWARD LENGTH=1456
Length=1456
Score = 926 bits (501), Expect = 0.0
Identities = 619/673 (92%), Gaps = 20/673 (3%)
Strand=Plus/Plus
Query 628 TGGATCATTTTTCGAGT-TCCAAAACTTCTCGTAGAAAGGTTTTGATTGTTAATGAAGGC 686
||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 697 TGGATGATTTTTCGAGTAT-GAAAACTTCTCGTAGAAAGGTTTTGATCGTTAATGAAGGC 755
Query 687 GCTGGAGATGCTCTTGCATTACTCGGTATGTTTCGGTTGGTGCAGTATTTATCACAGGAT 746
|| |||||||||||||||||||| |||||||||||||| |||||| |||| |||||||||
Sbjct 756 GCAGGAGATGCTCTTGCATTACTTGGTATGTTTCGGTTAGTGCAGCATTTGTCACAGGAT 815
Query 747 CATTTACTCGGGAAGAAGAGGCCGGTTAAATTTGTAGTGGATGCTGGTACTGGAACAACT 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 CATTTACTCGGGAAGAAGAGGCCGGTTAAATTTGTAGTGGATGCTGGTACTGGAACAACT 875
Query 807 GCTGTGGGCTTAGGAATTGCAGCTATGTCTTTAGGGCTTCCATGGGAGATCAATGCAGTG 866
|||||||| |||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 876 GCTGTGGGTTTAGGAGTTGCAGCTATGTCTTTAGGGCTTCCATGGGAAATCAATGCTGTG 935
Query 867 ATGCTAGCTGATACATTTGAAAACTACAAAAGACATGAAGATCGCTTGATAGCAGAATTT 926
||||||||||||||| | |||| ||||| ||||||||||||| ||||||||||||||||
Sbjct 936 ATGCTAGCTGATACACTCAAAAATTACAAGAGACATGAAGATCACTTGATAGCAGAATTT 995
Query 927 GCGAGGCAGTTTCTTGACTCGGTCTTCTGCAGCAGCTTGGATATGAATCAAATGATCAAA 986
|||||||||||| || ||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 996 TCGAGGCAGTTTCCTGGCTCAGTCTTCTGCAGCGGCTTGGATATGAATCAAATGATCAAA 1055
Query 987 TGGATAGATCGTCAACACCCGAGAAA----------------A--TTTGGGAAGATCTTG 1028
|||||||||||||||||||||||||| | ||||||||| |||||
Sbjct 1056 TGGATAGATCGTCAACACCCGAGAAATTCCTTTTGTTCTTGCAGATTTGGGAAGGTCTTG 1115
Query 1029 GAAGGAGAAGTGGAAATGTGTCGGAAAATTGCACAAGAGACAGGAGTTTTAGTGGATCCA 1088
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1116 GAAGGAGAAGTGGAGATGTGTCGGAAAATTGCACAGGAGACAGGAGTTTTAGTGGATCCA 1175
Query 1089 ATGTATACTTTAGCTGCTTGGGAGACAGCAACAGAGCTTGTGCACGAGGAGAAATCGAGC 1148
|||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 1176 ATGTATACTTTAGCCGCTTGGGAGACAGCAACAGAGCTTGTGCAGGACGAGAAATCAAGC 1235
Query 1149 ATTGTAGTGATGCTTCACACTGGAGGCACTCTAGGGATGTTTGGTCTTGCTCAAAGATAC 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 ATTGTAGTGATGCTTCACACTGGAGGCACTCTAGGGATGTTTGGTCTTGCTCAAAGATAC 1295
Query 1209 AAATCTTGCTTCACTAACTTGAAAGATTAGGATACAATTTCCAAGACTTAGAGCCAGAAA 1268
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1296 AAAACTTGCTTCACTAACTTGAAAGATTAGGATACAATAACCAAGACTTAGAGCCAGAAA 1355
Query 1269 TATAAAGATGGTT 1281
| |||||||||||
Sbjct 1356 TCTAAAGATGGTT 1368
Score = 905 bits (490), Expect = 0.0
Identities = 568/605 (94%), Gaps = 7/605 (1%)
Strand=Plus/Plus
Query 1 GAGAAGCGTCAATGAAAGTCCAACGGTCAACTTTTTTCGCGGTGACCGGAAAATCGAATC 60
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 13 GAGAAGCGTCAATGAAGGTCCAACGGTCAACTTTTTTGGCGGTGACCGGAAAATCAAATC 72
Query 61 TTCATCACTTTCACTCTTCTTCTCAGGGAA-TCACCA-T--TTCCGAGCTTGATTCACGA 116
|||||||||||||||| ||||||||| ||| || ||| | ||||||| | |||||||||
Sbjct 73 TTCATCACTTTCACTCGTCTTCTCAGAGAATTC-CCATTACTTCCGAGATCGATTCACGA 131
Query 117 CAGTTTTTGTCTAAATTACTTGAGAGAAAATGGGGATTACAAAGTCCTGCAACTCCAATT 176
||||| ||||||||||||| || ||||||||||||||||| |||||||| ||||||||
Sbjct 132 GAGTTTGTGTCTAAATTACTCGATAGAAAATGGGGATTACAGTGTCCTGCATCTCCAATT 191
Query 177 CAGCAGATTAGTGTTTCTTCTGTCAAAGGAATCGATAAATTCTCTTTCTTGAACAACACT 236
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 192 CAGCAGATTAGTGTTTCTTCTGTCAAAGGAATCGATAAATTCTCCTTCTTGAACAACACT 251
Query 237 CGTCCACATCTCGGAGATGAAATGTCGAAGTCAAAGCAA-GATTCGTCTTTTTATATTCT 295
|||||||||||||||||||||||||||||||| |||||| || || |||||||| |||||
Sbjct 252 CGTCCACATCTCGGAGATGAAATGTCGAAGTCGAAGCAAGGA-TCTTCTTTTTACATTCT 310
Query 296 TAGAGATGATCTTTTACATCCTCTTGTGAATGGTAACAAAGCTAGAAAGCTTGATGCTTT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TAGAGATGATCTTTTACATCCTCTTGTGAATGGTAACAAAGCTAGAAAGCTTGATGCTTT 370
Query 356 GTTACCACTTCTTGAAGATCATAAAGTAACTGATTTGGTTACATGTGGAGGTTGTCAAAG 415
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 371 GTTACCACTTGTTGAAGATCATAAAGTGACTGATTTGGTTACATGTGGAGGTTGTCAAAG 430
Query 416 TGCACATACAGCTGCAGTTGCTGTTTCGTGTGCCGAGAGAGGTCTAAGATCACATTTGCT 475
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 431 TGCACATACAGCTGCTGTTGCTGTTTCTTGTGCTGAGAGAGGTCTAAGATCACATTTGCT 490
Query 476 ACTGCGTGGAGAACAGCCCGATGTTTTGACTGGTTATAACCTTGTTTCAACTATGTATGG 535
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 491 ACTGCGTGGAGAACAGCCTGATGTTTTGACTGGTTATAACCTTGTTTCAACTATGTATGG 550
Query 536 AAATGTTCAGTATATTCCAAGATCAAGGTATGCGAATAGAGAGGAAATGTTGAGATCTCA 595
||||||||||||| |||||||||| |||||||||||||||||||||||| | ||| || |
Sbjct 551 AAATGTTCAGTATGTTCCAAGATCGAGGTATGCGAATAGAGAGGAAATGCTAAGAACTTA 610
Query 596 TGCGG 600
|||||
Sbjct 611 TGCGG 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66114117765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5