BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484379
Length=1611
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26125.1 | Symbols: CYP86C2 | cytochrome P450, family 86, su... 2399 0.0
> AT3G26125.1 | Symbols: CYP86C2 | cytochrome P450, family 86,
subfamily C, polypeptide 2 | chr3:9551812-9553437 FORWARD LENGTH=1626
Length=1626
Score = 2399 bits (1299), Expect = 0.0
Identities = 1506/1607 (94%), Gaps = 9/1607 (1%)
Strand=Plus/Plus
Query 11 TGTCATTGATAGATCGCATTTCTACTCATCTTTGTCTTCAAGATGTATCTATTGCGTTGT 70
||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||||
Sbjct 23 TGTCATTGATAGATCGCATCTCTGGTCATCTCTGTCTTCAAGATGTATCAATTGCGTTGT 82
Query 71 TAGGTTTATTCCTTTTTGGTTGCTTGCAAGCCAAGCTAACCAACAAAGGTGGACCAGTGC 130
|||||||||||||||| |||||||||||||| ||| ||||||||||||| | |||||| |
Sbjct 83 TAGGTTTATTCCTTTTCGGTTGCTTGCAAGCGAAGTTAACCAACAAAGGCGAACCAGTAC 142
Query 131 AATGGCCTGTGTTTGGGATCACTCCCGAGTTCTTTCTTCATGTTCACGATGTGTTCGGAT 190
||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| ||||
Sbjct 143 AATGGCCTGTGTTTGGGATAACTCCCGAGTTCTTCCTTCATGTTCACGATATGTTTGGAT 202
Query 191 GGGTTACACGGTGTTTGACGAAAAGTCGAGGAACGTTTCCTTACCAAGGAATCTGGTTTA 250
|||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 203 GGGTCACCCGATGTTTGACGAAAAGCCGAGGAACGTTTCCTTACCAAGGAATCTGGTTTA 262
Query 251 GTGGATCTTATGGAGCTATGACTAGTGTTCCTGCAAACATTGAATACATGCTCAAAACCA 310
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 263 GTGGATCTTACGGAGCCATGACTAGTGTTCCTGCAAACATCGAATACATGCTCAAAACCA 322
Query 311 ATTTCAAGAACTTCCCTAAAGGAGAGTTTTACAAAGAGAGATTCCGCGATTTACTCGAAG 370
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 323 ATTTCAAGAACTTTCCTAAAGGAGAGTTTTACAAAGAGAGATTCCGTGACTTACTCGAAG 382
Query 371 ATGGTATTTTCAATGCGGATGATGAATCTTGGAAAGAGCAGAGGCGGATTATCATAACTG 430
||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct 383 ATGGTATTTTCAATGCGGATGATGAATCTTGGAAAGAACAGAGACGGATCATCATAACAG 442
Query 431 AGATGCATTCGACTCGCTTCGTCGATCATTCTTTTCAAACGACGAGAGATTTGATACAGA 490
| |||||||| ||||||||||| ||||||||||| || |||||||||||||||||| |||
Sbjct 443 AAATGCATTCCACTCGCTTCGTGGATCATTCTTTCCAGACGACGAGAGATTTGATAGAGA 502
Query 491 GGAAGCTCTTGAAAGTGATGGAGAGTTTTTCCAAGTCACAAGAAGCTTTTGATCTTCAAG 550
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 503 GGAAGCTTTTAAAAGTGATGGAGAGTTTCTCCAAGTCACAAGAAGCTTTTGATCTTCAAG 562
Query 551 AGATTCTTTTACGGTTAACGTTCGATAATATCTGCATCGCTGGTCTTGGAGATGATCCGG 610
||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 563 AGATTCTTTTACGGTTAACATTTGATAATATCTGCATCGCGGGTCTTGGAGATGATCCGG 622
Query 611 GGACTTTAGATGATGATCTTCCCCACGTTCCATTCGCTAAAGCGTTTGAAGAAGCAACAG 670
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 623 GGACTTTGGATGATGATCTTCCTCACGTTCCATTCGCCAAAGCGTTTGAAGAAGCAACAG 682
Query 671 AATCTACTCTGTTTCGGTTCATGATTCCGCCATTTGTGTGGAAACCGATGAAGTTTTTTG 730
| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 683 AGTCTACTCTGTTTCGGTTCATGATTCCGCCTTTTGTGTGGAAACCAATGAAGTTTTTCG 742
Query 731 ATATAGGGTATGAGAAAGGGCTGAGGGAAGCGGTTGAGACGGTTCACAAGTTTATCGACA 790
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 743 ATATAGGGTATGAGAAAGGGCTTAGGGAAGCGGTTGAGACGGTTCACAACTTTATCGACA 802
Query 791 AGATGGTT-TTCGAGCGAATCGCGATGCTTAAGGATGAAGGAACATTAGCGAATAGCAAA 849
|||||||| || || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 803 AGATGGTTGTT-GAACGAATCGCGATGCTTAAGGACCAAGGAACATTAGCGAATAGCAAA 861
Query 850 TCCGATGTCCTCTCGAGACTAATCCAGATCGAAAGTCATAAAAGAGGCGATGAAAATGAT 909
||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 862 TCCGATGTCCTCTCGAGGCTAATACAGATCGAAAGTCACAAAAGAGGCGATGAAAATGAT 921
Query 910 AGATTCACCATTAAGTTTTTCAGACAGTTCTGTACAAGCTTTATCTTAGCGGGACGAGAC 969
|||||||| |||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 922 CGATTCACCGCCAAGTTTTTCAGACAGTTCTGCACAAGCTTCATCTTAGCCGGACGAGAC 981
Query 970 ACGAGTTCCGTCGCGCTTACTTGGTTCTTCTGGTTGATAACAAAACACCCTGAAGTCGAA 1029
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 982 ACGAGTTCCGTCGCGCTTACTTGGTTCTTCTGGTTGATAACAAAACACCCGGAAGTCGAA 1041
Query 1030 ACCAAGATCCTCCACGAAATCAGAGAAATCTTGAGCCAAAGAG-GACATAACAACAATAA 1088
||||||||||| |||||||||||||||||||||| |||||||| || | ||||| | ||
Sbjct 1042 ACCAAGATCCTTCACGAAATCAGAGAAATCTTGAACCAAAGAGAGA-AGAACAAGTACAA 1100
Query 1089 TC-T--TGAAACTGGAGAAACA-GAGAGGGGTTGTCACTTCACAGTCAAGGAACTAAACG 1144
| | |||||| ||||||| | ||||| | |||||||||||||||| ||||| ||||
Sbjct 1101 GCTTGATGAAACCGGAGAAA-AGGAGAGTTCTCGTCACTTCACAGTCAAAGAACTTAACG 1159
Query 1145 ATATGGTTTATCTACAAGCAGCATTGTCAGAAGCTCTTAGACTCTATCCACCAATTCCAA 1204
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1160 ATATGGTTTATCTACAAGCAGCATTGTCAGAATCTCTTAGACTCTATCCACCAATTCCAA 1219
Query 1205 TGGAAATGAAACAAGCGACCGAGGAAGATGTGTTTCCTGATGGAACTTTCTTGAGAAAAG 1264
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1220 TGGAAATGAAACAAGCGACCGAGGAAGATGTGTTTCCGGATGGAACTTTCTTGAGAAAAG 1279
Query 1265 GCTCGCGGGTTTACTTCTCAGTCTATGCAATGGGAAGGATGGAATCAATTTGGGGAAAAG 1324
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1280 GCTCAAGGGTTTACTTCTCAGTCTATGCAATGGGAAGGATGGAATCGATTTGGGGAAAAG 1339
Query 1325 ACTGTGAAATGTTCAAACCAGAAAGATGGATACAAGGAGGGCAATACGTTAGTGATGATC 1384
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1340 ACTGTGAAATGTTCAAACCAGAAAGATGGATACAAGGAGGGCAATACGTGAGTGATGATC 1399
Query 1385 AGTTTAAATACGTCGTGTTCAATGCCGGTCCAAGGCTTTGTTTAGGGAAAACATTTGCTT 1444
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1400 AGTTTAAATACGTCGTGTTCAATGCAGGTCCAAGACTTTGTTTAGGGAAAACATTTGCTT 1459
Query 1445 ACTTGCAGATGAAAATGGTGGCTGCTTCAATCTTGTTGAATTACTCAATCATGGTTGATC 1504
|||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||
Sbjct 1460 ACTTGCAGATGAAAATGGTGGCTGCTTCGATCTTGCTGAATTACTCAATCAAGGTTGATC 1519
Query 1505 AAGATCACGTTGTTGTTCCGCGAGTAACAACGACTTTGTATATGAAACATGGTCTTAAGG 1564
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 AAGATCATGTTGTTGTTCCGCGAGTAACAACGACTTTGTATATGAAACATGGTCTTAAGG 1579
Query 1565 TCAGGATTATACCGAGATCTCTAGAGGAGAAGAAGCAAGATTCATAA 1611
||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1580 TCAGGATTACACCGAGATCTCTAGAAGAGAAGAAGCAAGATTCATAA 1626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79567863825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5