BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484397
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26340.1 | Symbols: | N-terminal nucleophile aminohydrolase... 1683 0.0
AT1G13060.2 | Symbols: PBE1 | 20S proteasome beta subunit E1 | ... 719 0.0
> AT3G26340.1 | Symbols: | N-terminal nucleophile aminohydrolases
(Ntn hydrolases) superfamily protein | chr3:9650417-9652897
REVERSE LENGTH=1113
Length=1113
Score = 1683 bits (911), Expect = 0.0
Identities = 1024/1078 (95%), Gaps = 9/1078 (1%)
Strand=Plus/Plus
Query 1 GAGCTCAAGAAACATCCCTCCATAATTTGCTTCTCCattctccacttctctctcacattt 60
||||||||||||||||||||||||||||||||||| ||||||| | |||| |||| ||
Sbjct 2 GAGCTCAAGAAACATCCCTCCATAATTTGCTTCTCTTTTCTCCA-AT-TCTCACACA-TT 58
Query 61 cttcttcttcgttaatttgcttctcgatttcgttcttcAGGAATTTGACAATGAAGCTTG 120
||||| |||||||||||| || |||||||||| ||||||| |||||||||||||||||||
Sbjct 59 CTTCTGCTTCGTTAATTTTCTACTCGATTTCGCTCTTCAGAAATTTGACAATGAAGCTTG 118
Query 121 ATACTAGTGGATTGGAGACAACTATGCCTGTGATTGGTTTTGGATCAAACAGCGAGATGC 180
| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 119 ACACTAGTGGATTGGAGACAACTATGCCTGTGATTGGCTTTGGATCAAACAGTGAGATGC 178
Query 181 TTGATGGGTTTTCGTCTGTACCTTCGTTTGATCTTCCTCGTACCACCGACTTTGATGGGT 240
|||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||
Sbjct 179 TTGATGGGTTTTCGTCTGCACCTTCGTTTGATCTTCCTCGTACCACTGATTTTGATGGGT 238
Query 241 TTCAGAAAAAAGCTGTGGAGATGGTGAAGCCTGCAAAGGGTACAACTACACTTGCGTTTA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTCAGAAAAAAGCTGTGGAGATGGTGAAGCCTGCAAAGGGTACAACTACACTTGCGTTTA 298
Query 301 TCTTTAAAGAAGGTGTTATGGTTGCTGCTGATTCTCGAGCAAGCATGGGAGGATATATCT 360
||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 299 TCTTTAAGGAAGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATC- 357
Query 361 GTATGTCGCAATCTGTGAAGAAGATTATTGAAATTAATCCTTATATGCTTGGTACAATGG 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 -T-CGTCGCAATCTGTGAAGAAGATTATTGAAATTAATCCTTATATGCTTGGTACAATGG 415
Query 421 CTGGTGGAGCTGCTGATTGCCAATTCTGGCACAGAAATCTGGGAATTAAGTGCCGTCTAC 480
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CTGGTGGTGCTGCTGATTGTCAATTCTGGCACAGAAATCTGGGAATTAAGTGCCGTCTAC 475
Query 481 ATGAGCTGGCAAACAAAAGGAGAATCTCTGTTTCAGGAGCTTCAAAGCTTCTTGCTAACA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ATGAGCTGGCAAACAAAAGGAGAATCTCTGTTTCAGGAGCTTCAAAGCTTCTTGCTAACA 535
Query 541 TGCTCTATTCATACCGTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGATG 600
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 536 TGCTCTATTCATATCGTGGAATGGGACTTTCTGTTGGCACAATGATTGCTGGATGGGATG 595
Query 601 AAACAGGCCCTGGATTGTACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AAACAGGCCCTGGATTGTACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGAT 655
Query 661 TCTCTGTCGGTTCCGGTTCACCATACGCTTACGGTGTTCTGGACTGCGGATACAAATTCG 720
||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 656 TCTCTGTCGGTTCAGGTTCACCATACGCTTATGGTGTTCTGGACAGCGGATACAAATTCG 715
Query 721 ATATGTCGGTTGAAGAAGCCTCGGAGTTAGCAAGGAGATCCATATACCACGCCACATTCC 780
|||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||
Sbjct 716 ATATGTCGGTTGAAGAAGCCTCAGAGTTAGCAAGGAGATCCATCTACCATGCTACATTCC 775
Query 781 GTGATGGAGCTAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGGCCTCAAGGATGGAAGA 840
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 776 GTGATGGAGCTAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGGCCGCAAGGATGGACGA 835
Query 841 AACTCTCTGGAGACGACGTCGGCGAGCTACATTACCATTATTACCCCGTGACTCCAGTCA 900
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 836 AACTCTCTGGAGACGACGTTGGCGAGCTACATTACCATTATTACCCCGTGGCTCCAATCA 895
Query 901 CCGCGGAACATGTGATGGAAGAGGCTGCCGAATAAATACTGTGATTCGTCTCTATCTTTC 960
||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| |
Sbjct 896 CCGCGGAACATGTGATGGAAGAGGCTGCCGAATAAGTACTGTGATTCTTGTCTATCTTAC 955
Query 961 AAAGAGTTTTATTACATCACTTATGTTTTGTTCATCTATGAACAGAATCATAGATTCATC 1020
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 956 TAAGAGTTTTATTACATCACTTATGTTTTGTTCATCAATGAACAGAATCATAGATTCA-- 1013
Query 1021 ATGTTTCATTTGTATTGCAAATGATGTAGACGTTAGTCTGGCCACAATGATCAGGTTG 1078
| ||||| |||||||||| |||||||||||||||||| ||||||||||||||| ||||
Sbjct 1014 A-GTTTCTTTTGTATTGCGAATGATGTAGACGTTAGTTTGGCCACAATGATCACGTTG 1070
> AT1G13060.2 | Symbols: PBE1 | 20S proteasome beta subunit E1
| chr1:4452212-4454876 FORWARD LENGTH=1280
Length=1280
Score = 719 bits (389), Expect = 0.0
Identities = 516/576 (90%), Gaps = 13/576 (2%)
Strand=Plus/Plus
Query 369 CAATCTGTGAAGAAGATTATTGAAATTAATCCTTATATGCTTGGTACAATGGCTGGTGGA 428
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 498 CAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTACAATGGCTGGAGGA 557
Query 429 GCTGCTGATTGCCAATTCTGGCACAGAAATCTGGGAATTAAGTGCCGTCTACATGAGCTG 488
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 558 GCTGCTGATTGCCAATTCTGGCACAGAAATCTTGGAATTAAGTGCCGTCTACATGAGCTG 617
Query 489 GCAAACAAAAGGAGAATCTCTGTTTCAGGAGCTTC-AAAGCTTCTTGCTAACATGCTCTA 547
|||||||| ||||||||||||||||| |||||||| ||| |||||||| |||||||||||
Sbjct 618 GCAAACAAGAGGAGAATCTCTGTTTCCGGAGCTTCGAAA-CTTCTTGCCAACATGCTCTA 676
Query 548 TTCATACCGTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGATGAAACAGG 607
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 677 TTCATACCGTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGACGAAACTGG 736
Query 608 -CCCTGGATTGTACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGATTCTCTG 666
||| ||| | |||||||| |||||||||||||||||||| ||||||||||| || || |
Sbjct 737 TCCC-GGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACAGGTTTTCAG 795
Query 667 TCGGTTCCGGTTCACCATACGCTTACGGTGTTCTGGACTGCGGATACAAAT-TCGATATG 725
||||||| ||||||||||| ||||||||||| |||||| |||| ||||||| | ||||||
Sbjct 796 TCGGTTCTGGTTCACCATATGCTTACGGTGTGCTGGACAGCGGGTACAAATAT-GATATG 854
Query 726 TCGGTTGAAGAAGCCTCGGAGTTAGCAAGGAGATCCATATACCACGCCACATTCCGTGAT 785
|| ||||||||||| || ||||||||||||||||| || ||||| || ||||||||||||
Sbjct 855 TCAGTTGAAGAAGCTTCCGAGTTAGCAAGGAGATCAATCTACCATGCGACATTCCGTGAT 914
Query 786 GGAGCTAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGGCCTC-AAGGATGGAAGAAACT 844
||||| |||||||||||||||||||||||||||||||| || | ||||||||| ||||||
Sbjct 915 GGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCC-CGAAGGATGGACGAAACT 973
Query 845 CTCTGGAGACGACGTCGGCGAGCTACATTACCATTATTACCCCGTGACTCCAG-TCACCG 903
|| ||||| || || || |||||||| |||||||| ||||||||| | |||| | ||||
Sbjct 974 ATCAGGAGATGATGTTGGGGAGCTACACTACCATTACTACCCCGTGGCACCAGCT-ACCG 1032
Query 904 CGGAACATGTGATGGAAGAGGCT---GCCGAATAAA 936
| ||||| || ||||| || || ||||||||||
Sbjct 1033 CAGAACAAGTCATGGAGGAAGCAACAGCCGAATAAA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52810973340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5