BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484398
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26350.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN... 1415 0.0
> AT3G26350.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED
IN: root, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis,
petal differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: Late embryogenesis abundant protein, group 2
(InterPro:IPR004864); BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G13050.1); Has 3534 Blast hits
to 2704 proteins in 342 species: Archae - 6; Bacteria - 192;
Metazoa - 1076; Fungi - 505; Plants - 1162; Viruses - 224;
Other Eukaryotes - 369 (source: NCBI BLink). | chr3:9653660-9654730
REVERSE LENGTH=1071
Length=1071
Score = 1415 bits (766), Expect = 0.0
Identities = 984/1086 (91%), Gaps = 27/1086 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCATCATCATCACCATGAAACCAACCCTCATTTCGCCCGAATTCCATCGCAGAAT 60
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1 ATGTCTCATCATCATCACCATGAAACTAACCCTCATTTTGCGCGAATTCCATCGCAGAAT 60
Query 61 CCACATCTC-AAA--GGCGGTGCTTCTACCTCACAAACATCTCCGCACCAACCACTCATC 117
||||||||| ||| || |||||||||||||||||||||||| || ||||||||| ||||
Sbjct 61 CCACATCTCAAAAGCGGTGGTGCTTCTACCTCACAAACATCTTCGAACCAACCACACATC 120
Query 118 CAGCCCATTCCACA-CCaaaaaaaCCCGCACCATAAAACTACGCAACCTCACCCAGTCGC 176
| ||||||||| || ||||||||| ||||||| ||||| ||||||||||||||||| ||
Sbjct 121 CCGCCCATTCCGCACCCAAAAAAA-TCGCACCACAAAACCACGCAACCTCACCCAGTAGC 179
Query 177 TCCACCCGGAATCCTAATCAAGACTCGTGGTCGCCACCGTGAAAAACCAATCCAAGAACC 236
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 TCCACCAGGAATCCTAATCAAGACTCGTGGTCGCCACCGTGAAAATCCAATCCAAGAACC 239
Query 237 GAAACATTCTGTAATACCTTTACC------CCGAGAAGATAAACTACCGCCACAAAAAAC 290
||||||||||||||||||| |||| || ||| || | ||| || |||| ||||||
Sbjct 240 GAAACATTCTGTAATACCTGTACCATTAAGCCCAGAGGAGAGACTTCCACCACGAAAAAC 299
Query 291 TCCAAACTCTA-CGGAAAGACCATTGCCATTAAG-CCTCGAAGATCATcaacatcaacaa 348
|| |||||| | || |||||||||||| |||||| ||| |||||| ||| | | ||||||
Sbjct 300 TCAAAACTC-ATCGAAAAGACCATTGCTATTAAGCCCT-GAAGATAATC-A-A-CAACAA 354
Query 349 ctacaacaacaacaacaaAGACCTCCACCACCACAACGCAGCAGAGGCGGTTATGGATCA 408
| || | | | || ||| | | |||||||||||| | |||| ||||||||||||
Sbjct 355 CGAC--C-TC--C-AC---CACCACAAGCACCACAACGCAACGGAGGGGGTTATGGATCA 405
Query 409 ACATTACCTCCAATACCCAAACCAAGTCCATGGAGAACCGCTCCAACTCCATCCCCACAT 468
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 406 ACATTACCTCCAATACCCAAACCAAGTCCATGGAGAACCGCTCCAACACCATCCCCGCAT 465
Query 469 CACCGTGGTGGCCCACGGTTACTGCCGCCCTCAAGAGAGACAAACGCAATGACATGGTCA 528
||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 466 CACCGCCGTGGCCCACGGTTACCACCACCCTCAAGAGAGACAAACGCAATGACATGGTCA 525
Query 529 GCTGCATTTTGTTGTGCAATATTCTGGGTCATTCTTATTCTCGGCGGTCTTATTATCCTA 588
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 526 GCTGCATTTTGCTGTGCAATATTCTGGGTCATTCTTATTCTCGGCGGTCTTATCATCCTA 585
Query 589 ATCGTTTACCTCGTGTATCGTCCTCGCTCTCCTTACATGGACATCTCAGCTGCTAACCTA 648
|||||||||||||| || ||||||||||| |||||| | |||||||||||||||||||||
Sbjct 586 ATCGTTTACCTCGTCTACCGTCCTCGCTCACCTTACGTCGACATCTCAGCTGCTAACCTA 645
Query 649 AACGCTGCTTATCTCGACATGGGGTTTCTTCTAAACGGTGATCTAACCATTTTAGCAAAC 708
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 646 AACGCTGCTTATCTCGACATGGGTTTTCTTCTAAACGGTGATCTAACCATTTTAGCAAAC 705
Query 709 GTCACAAACCCAAGCAAGAAAAGCAGTGTGGAGTTTAGCTATGTGACGTTCGAGCTTTAC 768
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 706 GTCACAAACCCAAGCAAGAAAAGTAGTGTGGAGTTTAGCTATGTGACATTCGAGCTTTAC 765
Query 769 TATTACAATACACTCATAGCGACTCAATACATTGAACCTTTTAATGTTCCTAAGAAAACG 828
|||||||| ||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 766 TATTACAACACACTCATAGCAACTCAATACATTGAACCTTTCAAGGTTCCTAAGAAAACG 825
Query 829 TCGATGTTTGCGAGTGTTCATCTTGTGAGCAGTCAGGTCCAGCTTCAGCCAACGCAGAGT 888
|| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 826 TCAATGTTTGCGAATGTTCATCTTGTGAGCAGTCAGGTCCAGCTTCAGGCAACGCAGAGC 885
Query 889 CGGGAGCTGCAGCGTCAGATTGAAACCGGTCCGGTTTTGTTGAACCTCAGAGGAACGTTT 948
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 886 CGGGAGCTGCAGCGTCAGATTGAAACAGGTCCGGTTTTGTTGAACCTGAGAGGAATGTTT 945
Query 949 CATGCACGTTCGTATTTTGGACCATTGTTTAGATACTCTTATTGGTTGCATACTCATTGC 1008
|||||||||||| || | |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 946 CATGCACGTTCGCATATAGGACCATTGTTTAGGTACTCTTATAAGTTGCATACTCATTGC 1005
Query 1009 AGTGTTTCATTGAATAGTCCTCCTTCAGGAGCTATGCGCGCTAAAAGATGCAATACCAAA 1068
|| |||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||||
Sbjct 1006 AGCGTTTCATTGAATGGTCCTCCTTTAGGAGCTATGCGAGCTAGAAGATGCAATACCAAA 1065
Query 1069 CGCTAG 1074
||||||
Sbjct 1066 CGCTAG 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5